Literature DB >> 21588849

[2,2'-Dihy-droxy-N,N-(3-hy-droxy-imino-pentane-2,4-di-yl)dibenzo-hydra-zid-ato]copper(II).

Zi-Jing Xiao1.   

Abstract

The Cu(II) atom in the title complex, [Cu(C(19)H(17)N(5)O(5))], is coordinated by two N atoms and two O atoms of one 2,2'-dihy-droxy-N(2),N(2)'-(3-hy-droxy-imino-pentane-2,4-di-yl)dibenzo-hydrazidate ligand, exhibiting a distorted square-planar geometry. The dihedral angle between the two benzene rings in the oxime hydrazone is 7.62 (15)°. The molecular configuration is stabilized by intramolecular O-H⋯N hydrogen bonds. Pairs of centrosymmetrically related molecules are linked into dimers by two inter-molecular C-H⋯O hydrogen bonds. Each dimer is further connected to four neighboring dimers via four O-H⋯O hydrogen bonds, forming an extended two-dimensional structure. The oxime O atom is disordered over two orientations in a 2:1 ratio.

Entities:  

Year:  2010        PMID: 21588849      PMCID: PMC3008999          DOI: 10.1107/S1600536810040754

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structural versatility and biological activity of oxime hydrazone compounds and their metal complexes, see: Marmion et al. (2004 ▶); Song et al. (2000 ▶); Xiao et al. (2004 ▶). For similar copper(II) complexes with Schiff bases, see: Suleiman Gwaram et al. (2010 ▶); Qin et al. (2010 ▶).

Experimental

Crystal data

[Cu(C19H17N5O5)] M = 458.92 Monoclinic, a = 8.7672 (5) Å b = 19.0262 (11) Å c = 11.6118 (6) Å β = 91.437 (2)° V = 1936.31 (19) Å3 Z = 4 Mo Kα radiation μ = 1.17 mm−1 T = 293 K 0.52 × 0.22 × 0.15 mm

Data collection

Rigaku Weissenberg IP diffractometer Absorption correction: multi-scan (TEXRAY; Molecular Structure Corporation, 1999 ▶) T min = 0.715, T max = 0.833 17167 measured reflections 4436 independent reflections 3065 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.079 S = 0.91 4436 reflections 282 parameters H-atom parameters constrained Δρmax = 0.39 e Å−3 Δρmin = −0.40 e Å−3 Data collection: TEXRAY (Molecular Structure Corporation, 1999 ▶); cell refinement: TEXRAY; data reduction: TEXSAN (Mol­ecular Structure Corporation, 1999 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEX (McArdle, 1995 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810040754/om2355sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810040754/om2355Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(C19H17N5O5)]F(000) = 940
Mr = 458.92Dx = 1.574 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4577 reflections
a = 8.7672 (5) Åθ = 2.1–27.5°
b = 19.0262 (11) ŵ = 1.17 mm1
c = 11.6118 (6) ÅT = 293 K
β = 91.437 (2)°Prism, blue
V = 1936.31 (19) Å30.52 × 0.22 × 0.15 mm
Z = 4
Rigaku Weissenberg IP diffractometer4436 independent reflections
Radiation source: fine-focus sealed tube3065 reflections with I > 2σ(I)
graphiteRint = 0.037
ω scansθmax = 27.5°, θmin = 2.1°
Absorption correction: multi-scan (TEXRAY; Molecular Structure Corporation, 1999)h = 0→11
Tmin = 0.715, Tmax = 0.833k = −24→24
17167 measured reflectionsl = −15→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.079H-atom parameters constrained
S = 0.91w = 1/[σ2(Fo2) + (0.040P)2] where P = (Fo2 + 2Fc2)/3
4436 reflections(Δ/σ)max = 0.002
282 parametersΔρmax = 0.39 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cu10.24832 (3)0.508624 (12)0.47601 (2)0.03770 (9)
N10.46486 (19)0.53298 (9)0.64875 (15)0.0428 (4)
N20.36561 (18)0.48024 (9)0.61023 (14)0.0380 (4)
N30.2905 (3)0.30306 (12)0.6725 (2)0.0735 (7)
N40.13118 (18)0.42316 (8)0.47217 (14)0.0364 (4)
N50.01862 (18)0.42494 (9)0.38607 (15)0.0401 (4)
O10.6627 (2)0.59621 (11)0.78120 (17)0.0805 (6)
H1A0.60740.56400.75870.097*
O20.34881 (15)0.59685 (7)0.50147 (13)0.0414 (3)
O3A0.2209 (4)0.24814 (15)0.6492 (3)0.0749 (8)0.67
O3B0.3899 (6)0.2757 (2)0.7190 (5)0.0635 (15)0.33
O40.12933 (16)0.53067 (7)0.33856 (12)0.0414 (3)
O5−0.16592 (19)0.36688 (8)0.24617 (14)0.0604 (5)
H5B−0.10700.37030.30190.072*
C10.6346 (3)0.65344 (14)0.7173 (2)0.0581 (7)
C20.5294 (2)0.65449 (12)0.6241 (2)0.0461 (5)
C30.5081 (3)0.71686 (12)0.5633 (2)0.0594 (7)
H3A0.43760.71820.50220.071*
C40.5894 (3)0.77687 (15)0.5916 (3)0.0784 (9)
H4A0.57430.81810.54980.094*
C50.6921 (4)0.77491 (18)0.6816 (3)0.0911 (11)
H5A0.74670.81530.70110.109*
C60.7166 (3)0.71460 (19)0.7439 (3)0.0849 (10)
H6A0.78820.71440.80440.102*
C70.4416 (2)0.59175 (11)0.58840 (18)0.0386 (5)
C80.3669 (2)0.42120 (11)0.66539 (18)0.0409 (5)
C90.2605 (2)0.36376 (11)0.62829 (19)0.0405 (5)
C100.1317 (2)0.37065 (10)0.54304 (19)0.0394 (5)
C110.0336 (2)0.48128 (10)0.31893 (17)0.0355 (4)
C12−0.0688 (2)0.48412 (11)0.21619 (17)0.0402 (5)
C13−0.1615 (3)0.42678 (13)0.1830 (2)0.0485 (5)
C14−0.2529 (3)0.43151 (16)0.0835 (2)0.0647 (7)
H14A−0.31460.39390.06130.078*
C15−0.2519 (3)0.49149 (17)0.0182 (2)0.0718 (8)
H15A−0.31260.4939−0.04850.086*
C16−0.1628 (3)0.54807 (16)0.0496 (2)0.0679 (7)
H16A−0.16370.58860.00470.082*
C17−0.0720 (3)0.54442 (13)0.14814 (19)0.0510 (6)
H17A−0.01200.58280.16950.061*
C180.4736 (3)0.41084 (14)0.7671 (2)0.0635 (7)
H18A0.46470.44980.81900.095*
H18B0.57650.40790.74120.095*
H18C0.44780.36820.80620.095*
C190.0055 (3)0.31770 (13)0.5377 (3)0.0628 (7)
H19A−0.08860.34070.51670.094*
H19B−0.00380.29580.61170.094*
H19C0.02780.28260.48120.094*
U11U22U33U12U13U23
Cu10.03850 (14)0.03025 (14)0.04393 (15)−0.00304 (11)−0.00734 (9)0.00278 (11)
N10.0401 (9)0.0385 (10)0.0495 (11)−0.0008 (8)−0.0091 (8)−0.0045 (8)
N20.0340 (8)0.0354 (10)0.0443 (10)0.0032 (7)−0.0031 (7)−0.0007 (8)
N30.0906 (18)0.0425 (13)0.0885 (18)0.0125 (12)0.0220 (14)0.0210 (12)
N40.0365 (9)0.0305 (9)0.0418 (10)0.0005 (7)−0.0045 (7)−0.0002 (7)
N50.0402 (9)0.0339 (9)0.0459 (10)−0.0028 (7)−0.0059 (8)−0.0011 (8)
O10.0776 (13)0.0845 (15)0.0776 (14)−0.0080 (11)−0.0329 (11)−0.0108 (11)
O20.0395 (8)0.0317 (8)0.0527 (9)−0.0020 (6)−0.0074 (7)0.0017 (6)
O3A0.093 (2)0.0467 (17)0.084 (2)0.0043 (15)−0.0252 (17)0.0092 (14)
O3B0.072 (3)0.037 (3)0.079 (4)0.012 (2)−0.045 (3)0.014 (2)
O40.0468 (8)0.0340 (8)0.0430 (8)−0.0071 (7)−0.0071 (6)0.0029 (6)
O50.0683 (11)0.0463 (10)0.0655 (11)−0.0133 (8)−0.0179 (9)−0.0114 (8)
C10.0483 (14)0.0602 (17)0.0656 (17)−0.0051 (12)−0.0011 (12)−0.0208 (13)
C20.0377 (11)0.0423 (13)0.0586 (14)−0.0036 (10)0.0049 (10)−0.0157 (11)
C30.0614 (16)0.0400 (14)0.0772 (18)−0.0083 (12)0.0089 (13)−0.0106 (12)
C40.083 (2)0.0457 (16)0.107 (3)−0.0180 (15)0.0168 (19)−0.0154 (16)
C50.083 (2)0.068 (2)0.123 (3)−0.0347 (18)0.013 (2)−0.040 (2)
C60.0618 (19)0.094 (3)0.098 (2)−0.0187 (18)−0.0068 (17)−0.044 (2)
C70.0328 (10)0.0360 (11)0.0471 (13)0.0016 (8)0.0023 (9)−0.0067 (9)
C80.0383 (11)0.0382 (11)0.0461 (13)0.0094 (9)−0.0020 (9)0.0026 (9)
C90.0414 (11)0.0332 (11)0.0468 (12)0.0057 (9)0.0012 (9)0.0072 (9)
C100.0377 (11)0.0288 (10)0.0517 (13)0.0036 (8)0.0040 (9)0.0010 (9)
C110.0362 (10)0.0325 (10)0.0377 (11)0.0030 (8)−0.0009 (8)−0.0051 (8)
C120.0394 (11)0.0439 (12)0.0370 (11)0.0012 (9)−0.0011 (8)−0.0068 (9)
C130.0475 (13)0.0499 (14)0.0479 (13)−0.0009 (10)−0.0040 (10)−0.0118 (11)
C140.0592 (15)0.076 (2)0.0583 (16)−0.0082 (14)−0.0143 (12)−0.0202 (15)
C150.0670 (17)0.098 (2)0.0495 (14)−0.0008 (17)−0.0213 (12)−0.0039 (16)
C160.0711 (17)0.082 (2)0.0497 (15)0.0027 (16)−0.0104 (13)0.0140 (14)
C170.0506 (13)0.0555 (15)0.0466 (13)−0.0031 (11)−0.0061 (10)0.0035 (11)
C180.0716 (17)0.0571 (16)0.0605 (16)0.0002 (13)−0.0220 (13)0.0119 (13)
C190.0526 (14)0.0424 (14)0.093 (2)−0.0080 (11)−0.0113 (14)0.0233 (13)
Cu1—O21.9153 (13)C4—C51.362 (4)
Cu1—N21.9230 (16)C4—H4A0.9300
Cu1—N41.9231 (16)C5—C61.371 (5)
Cu1—O41.9308 (14)C5—H5A0.9300
N1—C71.333 (3)C6—H6A0.9300
N1—N21.395 (2)C8—C91.493 (3)
N2—C81.293 (3)C8—C181.501 (3)
N3—O3B1.140 (4)C9—C101.489 (3)
N3—O3A1.236 (3)C10—C191.497 (3)
N3—C91.288 (3)C11—C121.476 (3)
N4—C101.294 (3)C12—C171.393 (3)
N4—N51.388 (2)C12—C131.408 (3)
N5—C111.334 (3)C13—C141.392 (3)
O1—C11.337 (3)C14—C151.370 (4)
O1—H1A0.8200C14—H14A0.9300
O2—C71.284 (2)C15—C161.374 (4)
O3A—O3B1.752 (5)C15—H15A0.9300
O4—C111.277 (2)C16—C171.379 (3)
O5—C131.356 (3)C16—H16A0.9300
O5—H5B0.8200C17—H17A0.9300
C1—C61.398 (4)C18—H18A0.9600
C1—C21.404 (3)C18—H18B0.9600
C2—C31.391 (3)C18—H18C0.9600
C2—C71.474 (3)C19—H19A0.9600
C3—C41.381 (3)C19—H19B0.9600
C3—H3A0.9300C19—H19C0.9600
O2—Cu1—N283.48 (6)N2—C8—C9119.70 (18)
O2—Cu1—N4171.09 (7)N2—C8—C18120.1 (2)
N2—Cu1—N493.19 (7)C9—C8—C18120.22 (19)
O2—Cu1—O4100.02 (6)N3—C9—C10119.2 (2)
N2—Cu1—O4176.23 (6)N3—C9—C8114.9 (2)
N4—Cu1—O483.54 (6)C10—C9—C8125.81 (18)
C7—N1—N2110.44 (16)N4—C10—C9118.78 (18)
C8—N2—N1117.96 (17)N4—C10—C19120.15 (19)
C8—N2—Cu1130.03 (15)C9—C10—C19121.07 (19)
N1—N2—Cu1111.99 (13)O4—C11—N5124.12 (18)
O3B—N3—O3A94.9 (3)O4—C11—C12120.09 (18)
O3B—N3—C9138.1 (4)N5—C11—C12115.79 (18)
O3A—N3—C9125.1 (3)C17—C12—C13118.7 (2)
C10—N4—N5117.91 (17)C17—C12—C11119.46 (19)
C10—N4—Cu1130.13 (14)C13—C12—C11121.9 (2)
N5—N4—Cu1111.46 (12)O5—C13—C14118.6 (2)
C11—N5—N4111.23 (16)O5—C13—C12121.8 (2)
C1—O1—H1A109.5C14—C13—C12119.5 (2)
C7—O2—Cu1109.58 (13)C15—C14—C13120.1 (2)
C11—O4—Cu1109.08 (13)C15—C14—H14A119.9
C13—O5—H5B109.5C13—C14—H14A119.9
O1—C1—C6117.9 (3)C14—C15—C16121.1 (2)
O1—C1—C2123.2 (2)C14—C15—H15A119.4
C6—C1—C2118.9 (3)C16—C15—H15A119.4
C3—C2—C1118.7 (2)C15—C16—C17119.6 (3)
C3—C2—C7119.0 (2)C15—C16—H16A120.2
C1—C2—C7122.2 (2)C17—C16—H16A120.2
C4—C3—C2121.5 (3)C16—C17—C12121.0 (2)
C4—C3—H3A119.2C16—C17—H17A119.5
C2—C3—H3A119.2C12—C17—H17A119.5
C5—C4—C3119.1 (3)C8—C18—H18A109.5
C5—C4—H4A120.4C8—C18—H18B109.5
C3—C4—H4A120.4H18A—C18—H18B109.5
C4—C5—C6121.3 (3)C8—C18—H18C109.5
C4—C5—H5A119.3H18A—C18—H18C109.5
C6—C5—H5A119.3H18B—C18—H18C109.5
C5—C6—C1120.5 (3)C10—C19—H19A109.5
C5—C6—H6A119.8C10—C19—H19B109.5
C1—C6—H6A119.8H19A—C19—H19B109.5
O2—C7—N1124.22 (19)C10—C19—H19C109.5
O2—C7—C2118.43 (19)H19A—C19—H19C109.5
N1—C7—C2117.36 (19)H19B—C19—H19C109.5
C7—N1—N2—C8−175.43 (18)Cu1—N2—C8—C9−2.6 (3)
C7—N1—N2—Cu15.9 (2)N1—N2—C8—C18−0.3 (3)
O2—Cu1—N2—C8177.17 (19)Cu1—N2—C8—C18178.08 (16)
N4—Cu1—N2—C85.46 (19)O3B—N3—C9—C10160.8 (5)
O2—Cu1—N2—N1−4.33 (12)O3A—N3—C9—C100.8 (4)
N4—Cu1—N2—N1−176.04 (13)O3B—N3—C9—C8−16.5 (6)
N2—Cu1—N4—C104.20 (19)O3A—N3—C9—C8−176.5 (3)
O4—Cu1—N4—C10−177.69 (19)N2—C8—C9—N3166.7 (2)
N2—Cu1—N4—N5175.78 (13)C18—C8—C9—N3−14.0 (3)
O4—Cu1—N4—N5−6.10 (12)N2—C8—C9—C10−10.4 (3)
C10—N4—N5—C11−179.12 (18)C18—C8—C9—C10168.9 (2)
Cu1—N4—N5—C118.1 (2)N5—N4—C10—C9173.72 (17)
N2—Cu1—O2—C71.81 (13)Cu1—N4—C10—C9−15.1 (3)
O4—Cu1—O2—C7−176.79 (13)N5—N4—C10—C19−5.6 (3)
C9—N3—O3A—O3B166.8 (5)Cu1—N4—C10—C19165.55 (17)
C9—N3—O3B—O3A−163.7 (6)N3—C9—C10—N4−157.7 (2)
O2—Cu1—O4—C11−169.01 (12)C8—C9—C10—N419.3 (3)
N4—Cu1—O4—C112.74 (13)N3—C9—C10—C1921.6 (3)
O1—C1—C2—C3179.8 (2)C8—C9—C10—C19−161.4 (2)
C6—C1—C2—C3−1.4 (4)Cu1—O4—C11—N51.5 (2)
O1—C1—C2—C7−0.6 (4)Cu1—O4—C11—C12−178.11 (14)
C6—C1—C2—C7178.3 (2)N4—N5—C11—O4−6.6 (3)
C1—C2—C3—C40.9 (4)N4—N5—C11—C12172.98 (16)
C7—C2—C3—C4−178.7 (2)O4—C11—C12—C17−7.1 (3)
C2—C3—C4—C5−0.4 (4)N5—C11—C12—C17173.30 (19)
C3—C4—C5—C60.3 (5)O4—C11—C12—C13171.42 (19)
C4—C5—C6—C1−0.8 (5)N5—C11—C12—C13−8.2 (3)
O1—C1—C6—C5−179.8 (3)C17—C12—C13—O5−178.9 (2)
C2—C1—C6—C51.3 (4)C11—C12—C13—O52.6 (3)
Cu1—O2—C7—N11.3 (2)C17—C12—C13—C140.3 (3)
Cu1—O2—C7—C2−179.02 (15)C11—C12—C13—C14−178.2 (2)
N2—N1—C7—O2−4.9 (3)O5—C13—C14—C15179.5 (2)
N2—N1—C7—C2175.42 (17)C12—C13—C14—C150.3 (4)
C3—C2—C7—O20.4 (3)C13—C14—C15—C16−0.6 (4)
C1—C2—C7—O2−179.2 (2)C14—C15—C16—C170.4 (4)
C3—C2—C7—N1−179.9 (2)C15—C16—C17—C120.2 (4)
C1—C2—C7—N10.4 (3)C13—C12—C17—C16−0.5 (3)
N1—N2—C8—C9178.94 (17)C11—C12—C17—C16178.0 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1A···N10.821.862.586 (2)147
O5—H5B···N50.821.792.519 (2)148
C19—H19A···O2i0.962.583.525 (3)170
O3A—H···O5ii..2.643 (3).
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯N10.821.862.586 (2)147
O5—H5B⋯N50.821.792.519 (2)148
C19—H19A⋯O2i0.962.583.525 (3)170
O3A⋯O5ii  2.643 (3) 

Symmetry codes: (i) ; (ii) .

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