Literature DB >> 21588805

Bis[[(6-carb-oxy-pyridazine-3-carboxyl-ato-κN,O)lithium]-μ-penta-hydrogen-dioxy-gen(1+)].

Wojciech Starosta1, Janusz Leciejewicz.   

Abstract

The structure of the title compound, [Li(C(6)H(3)N(2)O(4))(2)(H(5)O(2))], is composed of centrosymmetric monomers in which an Li(I) ion is chelated by two N,O-bonding groups donated by two ligands. The Li(I) ion and both ligand mol-ecules are coplanar [r.m.s. deviation 0.0047 (2) Å] and water O atoms are in the axial positions. The second carboxyl group of each ligand remains protonated. An additional H atom, located between adjacent coordinated water mol-ecules and observed on Fourier maps, maintains the charge balance within the monomers and bridges them by short symmetric hydrogen bonds of 2.518 (3) Å to form catenated ribbons. The monomers also inter-act via hydrogen bonds in which water and carboxyl O atoms act as donors.

Entities:  

Year:  2010        PMID: 21588805      PMCID: PMC3009182          DOI: 10.1107/S1600536810039176

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of 3d metal complexes with pyrid­azine-3,6-dicarboxyl­ate and water ligands, see: El Gueddi et al. (1996 ▶); Escuer et al. (1997 ▶); Gryz et al. (2006 ▶); Sun et al. (2007 ▶, 2008 ▶). For the structures of complexes with MgII, see: Gryz et al. (2004 ▶). For the structures of complexes with PbII, see: Sobanska et al. (1999 ▶). For the structures of both modifications of pyridazine-3,6-dicarb­oxy­lic acid, see: Suecur et al. (1987 ▶); Starosta & Leciejewicz (2004 ▶).

Experimental

Crystal data

[Li(C6H3N2O4)2(H5O2)] M = 378.19 Monoclinic, a = 4.903 (1) Å b = 24.640 (5) Å c = 6.6020 (13) Å β = 111.60 (3)° V = 741.6 (3) Å3 Z = 2 Mo Kα radiation μ = 0.15 mm−1 T = 295 K 0.42 × 0.39 × 0.07 mm

Data collection

Kuma KM-4 four-circle diffractometer Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008 ▶) T min = 0.961, T max = 0.999 4355 measured reflections 2181 independent reflections 1207 reflections with I > 2σ(I) R int = 0.160 3 standard reflections every 200 reflections intensity decay: 0.8%

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.117 S = 1.01 2181 reflections 135 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.40 e Å−3 Δρmin = −0.31 e Å−3 Data collection: KM-4 (Kuma, 1996 ▶); cell refinement: KM-4; data reduction: DATAPROC (Kuma, 2001 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810039176/rk2232sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810039176/rk2232Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Li(C6H3N2O4)2(H5O2)]F(000) = 388
Mr = 378.19Dx = 1.694 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
a = 4.903 (1) ÅCell parameters from 25 reflections
b = 24.640 (5) Åθ = 6–15°
c = 6.6020 (13) ŵ = 0.15 mm1
β = 111.60 (3)°T = 295 K
V = 741.6 (3) Å3Plate, colourless
Z = 20.42 × 0.39 × 0.07 mm
Kuma KM-4 four-circle diffractometer1207 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.160
graphiteθmax = 30.1°, θmin = 1.7°
profile data from ω/2θ–scansh = −6→6
Absorption correction: analytical (CrysAlis RED; Oxford Diffraction, 2008)k = 0→34
Tmin = 0.961, Tmax = 0.999l = −9→9
4355 measured reflections3 standard reflections every 200 reflections
2181 independent reflections intensity decay: 0.8%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H atoms treated by a mixture of independent and constrained refinement
S = 1.01w = 1/[σ2(Fo2) + (0.0251P)2 + 0.0008P] where P = (Fo2 + 2Fc2)/3
2181 reflections(Δ/σ)max < 0.001
135 parametersΔρmax = 0.40 e Å3
3 restraintsΔρmin = −0.31 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.1189 (4)0.08134 (5)0.4137 (2)0.0216 (3)
O1−0.1491 (4)0.04967 (4)0.6760 (2)0.0308 (3)
O30.5111 (3)0.11620 (5)0.0040 (2)0.0288 (3)
O2−0.2209 (3)0.13593 (5)0.7509 (2)0.0297 (3)
C50.2683 (4)0.14735 (6)0.2292 (3)0.0208 (4)
N20.2452 (4)0.09550 (5)0.2750 (2)0.0215 (3)
C20.0209 (4)0.11977 (6)0.5110 (2)0.0196 (3)
C7−0.1279 (4)0.10016 (6)0.6606 (2)0.0208 (4)
C80.4088 (4)0.15946 (6)0.0675 (3)0.0226 (4)
O40.4208 (4)0.20499 (4)0.0057 (2)0.0405 (4)
C40.1727 (5)0.18911 (6)0.3287 (3)0.0264 (4)
H40.19300.22530.29650.032*
C30.0479 (5)0.17513 (6)0.4753 (3)0.0253 (4)
H3−0.01650.20140.54860.030*
Li10.00000.00000.50000.0588 (19)
O60.4949 (4)−0.00562 (5)0.8091 (2)0.0415 (4)
H610.606 (6)0.0181 (8)0.792 (4)0.062*
H620.558 (6)−0.0364 (7)0.807 (4)0.062*
H310.617 (7)0.1250 (8)−0.089 (4)0.042 (7)*
H630.50000.00001.00000.080 (14)*
U11U22U33U12U13U23
N10.0282 (8)0.0198 (6)0.0270 (7)0.0007 (5)0.0221 (6)0.0017 (5)
O10.0433 (9)0.0227 (5)0.0420 (7)−0.0012 (5)0.0339 (6)0.0023 (5)
O30.0415 (9)0.0237 (5)0.0362 (7)0.0014 (5)0.0319 (6)0.0020 (5)
O20.0401 (9)0.0289 (6)0.0350 (7)0.0004 (5)0.0311 (5)−0.0016 (4)
C50.0247 (9)0.0204 (6)0.0235 (7)−0.0007 (7)0.0160 (6)0.0004 (5)
N20.0295 (9)0.0200 (5)0.0245 (7)0.0004 (6)0.0211 (6)0.0018 (5)
C20.0234 (9)0.0205 (6)0.0215 (7)−0.0009 (6)0.0162 (6)0.0000 (5)
C70.0215 (9)0.0260 (7)0.0221 (7)−0.0010 (6)0.0162 (6)0.0000 (5)
C80.0289 (10)0.0216 (7)0.0243 (7)−0.0016 (6)0.0182 (7)−0.0013 (5)
O40.0689 (11)0.0230 (6)0.0506 (8)−0.0029 (7)0.0465 (7)0.0046 (5)
C40.0384 (12)0.0187 (6)0.0308 (9)0.0008 (7)0.0229 (8)0.0013 (6)
C30.0352 (11)0.0195 (7)0.0312 (9)0.0001 (7)0.0239 (7)−0.0029 (6)
Li10.108 (6)0.0194 (19)0.095 (4)−0.006 (3)0.091 (4)−0.001 (2)
O60.0709 (13)0.0209 (6)0.0542 (9)−0.0033 (6)0.0484 (8)0.0009 (5)
N1—N21.327 (2)C2—C71.507 (3)
N1—C21.330 (2)C8—O41.2024 (19)
N1—Li12.2194 (14)C4—C31.366 (3)
O1—C71.2558 (18)C4—H40.9300
O1—Li12.0019 (15)C3—H30.9300
O3—C81.311 (2)Li1—O1i2.0020 (15)
O3—H310.96 (4)Li1—N1i2.2195 (14)
O2—C71.241 (2)Li1—O62.535 (2)
C5—N21.3274 (19)Li1—O6i2.535 (2)
C5—C41.392 (2)O6—H610.836 (18)
C5—C81.498 (3)O6—H620.822 (16)
C2—C31.399 (2)O6—H631.2600
N2—N1—C2119.32 (13)C2—C3—H3121.3
N2—N1—Li1130.38 (11)O1—Li1—O1i180.0
C2—N1—Li1110.08 (12)O1—Li1—N177.50 (6)
C7—O1—Li1119.98 (14)O1i—Li1—N1102.50 (6)
C8—O3—H31112.3 (14)O1—Li1—N1i102.50 (6)
N2—C5—C4122.17 (19)O1i—Li1—N1i77.50 (6)
N2—C5—C8117.00 (16)N1—Li1—N1i180.0
C4—C5—C8120.82 (14)O1—Li1—O690.68 (6)
C5—N2—N1120.70 (16)O1i—Li1—O689.32 (6)
N1—C2—C3122.66 (18)N1—Li1—O689.54 (5)
N1—C2—C7115.88 (13)N1i—Li1—O690.46 (5)
C3—C2—C7121.45 (17)O1—Li1—O6i89.32 (6)
O2—C7—O1127.48 (19)O1i—Li1—O6i90.68 (6)
O2—C7—C2116.05 (14)N1—Li1—O6i90.46 (5)
O1—C7—C2116.45 (16)N1i—Li1—O6i89.54 (5)
O4—C8—O3125.3 (2)O6—Li1—O6i180.0
O4—C8—C5121.33 (18)Li1—O6—H61109.5 (17)
O3—C8—C5113.34 (14)Li1—O6—H62106.8 (17)
C3—C4—C5117.69 (15)H61—O6—H62112 (3)
C3—C4—H4121.2Li1—O6—H63117.00
C5—C4—H4121.2H61—O6—H63107.00
C4—C3—C2117.40 (17)H62—O6—H63104.00
C4—C3—H3121.3
D—H···AD—HH···AD···AD—H···A
O6—H63···O6ii1.261.262.518 (3)180
O6—H61···O1iii0.84 (2)1.82 (2)2.608 (2)157 (3)
O3—H31···O2iv0.96 (4)1.56 (4)2.525 (2)176 (2)
O6—H62···O3v0.82 (2)2.42 (2)2.9957 (19)128 (3)
O6—H62···N2v0.82 (2)1.93 (2)2.712 (2)159 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H63⋯O6i1.261.262.518 (3)180
O6—H61⋯O1ii0.84 (2)1.82 (2)2.608 (2)157 (3)
O3—H31⋯O2iii0.96 (4)1.56 (4)2.525 (2)176 (2)
O6—H62⋯O3iv0.82 (2)2.42 (2)2.9957 (19)128 (3)
O6—H62⋯N2iv0.82 (2)1.93 (2)2.712 (2)159 (3)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Metal-coordination-directed assembly of binuclear trigonal prisms and three-dimensional hydrogen-bonded networks.

Authors:  Wei-Wei Sun; Ai-Ling Cheng; Qin-Xiang Jia; En-Qing Gao
Journal:  Inorg Chem       Date:  2007-06-15       Impact factor: 5.165

  2 in total
  3 in total

1.  Bis(hydrazin-1-ium) bis-(μ(2)-pyridazine-3,6-dicarboxyl-ato)bis-(aqua-lithiate) octa-aqua-bis-(μ(3)-pyridazine-3,6-dicarboxyl-ato)tetra-lithium.

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-02-24

2.  catena-Poly[[μ(2)-aqua-diaqua-bis-(μ(4)-pyridazine-3,6-dicarboxyl-ato)tetra-lithium] monohydrate].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-09-30

3.  Poly[hydrazin-1-ium [diaqua-bis-(μ(4)-pyridazine-3,6-dicarboxyl-ato)trilithate] monohydrate].

Authors:  Wojciech Starosta; Janusz Leciejewicz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-03-31
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.