Literature DB >> 21588796

(Di-2-pyridyl-amine)-(methanol)sulfato-copper(II).

Paul Deburgomaster1, Jon Zubieta.   

Abstract

The title complex, [Cu(SO(4))(C(10)H(9)N(3))(CH(3)OH)], is a mononuclear species with the Cu(II) ion in a Jahn-Teller-distorted '4 + 1' square-pyramidal geometry. The basal plane is defined by the pyridyl N-atom donors of the bipyridyl-amine (bpa) ligand and two O-atom donors of the sulfate ligand. The coordination geometry is completed by the axial coordination of a methanol O-atom donor. The axial bond length displays the usual elongation: Cu-O(axial) = 2.168 (2), Cu-O(basal) = 2.016 (2) (average) and Cu-N(basal) = 1.951 (3) Å (average). In the crystal structure, the complex mol-ecules are linked through N-H⋯O and O-H⋯O hydrogen bonds into chains along [100].

Entities:  

Year:  2010        PMID: 21588796      PMCID: PMC3009304          DOI: 10.1107/S1600536810038675

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structures of other copper-bis­(2-pyrid­yl)amine complexes, see: Fischer & Bau (1977 ▶); Kavounis et al. (1999 ▶); Youngme et al. (2005 ▶). For solvatothermal chemistry of compounds containing copper-bis­(2-pyrid­yl)amine subunits, see: DeBurgo­master et al. (2010 ▶). For structural chemistry of the related tridentate ligand bis­(2-pyridyl­meth­yl)amine, see: Bartholomä et al. (2010a ▶, b ▶,c ▶,d ▶,e ▶). For copper–pyridyl subunits in the design of organic–inorganic hybrid materials, see: Armatas et al. (2005 ▶); Chesnut et al. (1999 ▶); Hagrman et al. (1999 ▶).

Experimental

Crystal data

[Cu(SO4)(C10H9N3)(CH4O)] M = 362.84 Monoclinic, a = 7.1403 (10) Å b = 10.7361 (15) Å c = 17.798 (3) Å β = 92.185 (3)° V = 1363.4 (3) Å3 Z = 4 Mo Kα radiation μ = 1.78 mm−1 T = 90 K 0.30 × 0.15 × 0.07 mm

Data collection

Bruker APEX CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.617, T max = 0.886 13215 measured reflections 3308 independent reflections 3119 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.052 wR(F 2) = 0.109 S = 1.26 3308 reflections 192 parameters H-atom parameters constrained Δρmax = 0.79 e Å−3 Δρmin = −0.75 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: CrystalMaker (Palmer, 2006 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810038675/hg2716sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038675/hg2716Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu(SO4)(C10H9N3)(CH4O)]F(000) = 740
Mr = 362.84Dx = 1.768 Mg m3Dm = 1.75 (2) Mg m3Dm measured by flotation
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 4522 reflections
a = 7.1403 (10) Åθ = 3.0–28.3°
b = 10.7361 (15) ŵ = 1.78 mm1
c = 17.798 (3) ÅT = 90 K
β = 92.185 (3)°Plate, green
V = 1363.4 (3) Å30.30 × 0.15 × 0.07 mm
Z = 4
Bruker APEX CCD area-detector diffractometer3308 independent reflections
Radiation source: fine-focus sealed tube3119 reflections with I > 2σ(I)
graphiteRint = 0.033
Detector resolution: 512 pixels mm-1θmax = 28.1°, θmin = 3.0°
φ and ω scansh = −9→9
Absorption correction: multi-scan (SADABS; Bruker, 1998)k = −14→13
Tmin = 0.617, Tmax = 0.886l = −23→23
13215 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.052Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.109H-atom parameters constrained
S = 1.26w = 1/[σ2(Fo2) + (0.0374P)2 + 3.5736P] where P = (Fo2 + 2Fc2)/3
3308 reflections(Δ/σ)max < 0.001
192 parametersΔρmax = 0.79 e Å3
0 restraintsΔρmin = −0.75 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.64877 (5)0.27906 (3)0.05295 (2)0.00870 (12)
S10.37436 (10)0.16887 (7)0.11547 (4)0.00900 (16)
O10.4394 (3)0.1566 (2)0.03641 (12)0.0116 (4)
O20.5310 (3)0.2441 (2)0.15261 (13)0.0118 (5)
O30.2005 (3)0.2444 (2)0.11458 (13)0.0131 (5)
O40.3483 (3)0.0501 (2)0.15113 (13)0.0138 (5)
O50.8729 (3)0.1433 (2)0.06432 (14)0.0174 (5)
HO50.98870.16900.07700.029 (12)*
N10.6684 (4)0.3176 (2)−0.05332 (15)0.0100 (5)
N20.7276 (4)0.5328 (2)−0.03312 (15)0.0111 (5)
HN20.76380.5982−0.06060.017 (10)*
N30.7710 (4)0.4339 (2)0.08540 (15)0.0105 (5)
C10.6369 (4)0.2227 (3)−0.10237 (18)0.0134 (6)
H10.62950.1404−0.08320.016*
C20.6153 (5)0.2405 (3)−0.17841 (19)0.0144 (6)
H20.59780.1717−0.21150.017*
C30.6197 (5)0.3619 (3)−0.20600 (19)0.0152 (7)
H30.59840.3774−0.25820.018*
C40.6550 (4)0.4588 (3)−0.15736 (19)0.0129 (6)
H40.66010.5419−0.17550.015*
C50.6835 (4)0.4337 (3)−0.08069 (18)0.0103 (6)
C60.7789 (4)0.5367 (3)0.04263 (18)0.0106 (6)
C70.8364 (5)0.6517 (3)0.07262 (19)0.0147 (6)
H70.83930.72360.04150.018*
C80.8885 (5)0.6594 (3)0.1477 (2)0.0169 (7)
H80.92720.73670.16910.020*
C90.8838 (5)0.5519 (3)0.19230 (19)0.0166 (7)
H90.92130.55460.24410.020*
C100.8242 (4)0.4435 (3)0.15956 (18)0.0138 (6)
H100.81940.37090.18990.017*
C110.8502 (5)0.0179 (3)0.0901 (2)0.0208 (8)
H11A0.9712−0.02520.09030.031*
H11B0.7603−0.02580.05650.031*
H11C0.80360.01890.14120.031*
U11U22U33U12U13U23
Cu10.00907 (19)0.00779 (19)0.00915 (19)−0.00177 (14)−0.00090 (13)0.00045 (14)
S10.0095 (3)0.0083 (3)0.0091 (3)−0.0007 (3)−0.0005 (3)0.0008 (3)
O10.0126 (11)0.0117 (11)0.0104 (10)−0.0052 (8)−0.0002 (8)−0.0010 (9)
O20.0124 (11)0.0116 (11)0.0114 (10)−0.0031 (8)−0.0018 (8)−0.0003 (8)
O30.0119 (11)0.0087 (10)0.0187 (12)0.0012 (8)0.0000 (9)0.0031 (9)
O40.0200 (12)0.0067 (10)0.0145 (11)−0.0010 (9)−0.0005 (9)0.0022 (9)
O50.0122 (11)0.0119 (11)0.0277 (13)−0.0005 (9)−0.0028 (10)0.0031 (10)
N10.0094 (12)0.0096 (12)0.0112 (12)−0.0001 (10)0.0022 (9)−0.0007 (10)
N20.0131 (13)0.0064 (12)0.0138 (13)−0.0013 (10)−0.0010 (10)0.0018 (10)
N30.0093 (12)0.0098 (12)0.0122 (13)−0.0012 (10)−0.0015 (10)0.0004 (10)
C10.0146 (15)0.0093 (14)0.0163 (16)−0.0012 (12)0.0010 (12)−0.0021 (12)
C20.0167 (16)0.0125 (15)0.0139 (15)−0.0004 (12)0.0008 (12)−0.0046 (12)
C30.0142 (15)0.0210 (17)0.0107 (15)0.0017 (13)0.0026 (12)0.0012 (13)
C40.0139 (15)0.0089 (14)0.0160 (16)0.0001 (12)0.0020 (12)0.0019 (12)
C50.0067 (13)0.0112 (14)0.0132 (15)0.0016 (11)0.0013 (11)−0.0023 (12)
C60.0063 (13)0.0124 (15)0.0132 (15)0.0002 (11)0.0004 (11)0.0004 (12)
C70.0153 (16)0.0093 (15)0.0191 (16)0.0007 (12)−0.0033 (12)0.0016 (13)
C80.0139 (16)0.0155 (16)0.0211 (17)−0.0030 (13)−0.0031 (13)−0.0071 (14)
C90.0130 (15)0.0227 (18)0.0137 (16)−0.0006 (13)−0.0044 (12)−0.0014 (13)
C100.0125 (15)0.0166 (16)0.0119 (15)−0.0030 (12)−0.0022 (12)0.0028 (12)
C110.0171 (17)0.0091 (16)0.036 (2)0.0005 (13)−0.0048 (15)0.0021 (14)
Cu1—N11.946 (3)C1—H10.9500
Cu1—N31.955 (3)C2—C31.394 (5)
Cu1—O12.004 (2)C2—H20.9500
Cu1—O22.027 (2)C3—C41.370 (5)
Cu1—O52.168 (2)C3—H30.9500
S1—O41.439 (2)C4—C51.398 (5)
S1—O31.482 (2)C4—H40.9500
S1—O11.504 (2)C6—C71.401 (4)
S1—O21.511 (2)C7—C81.375 (5)
O5—C111.434 (4)C7—H70.9500
O5—HO50.8923C8—C91.402 (5)
N1—C51.343 (4)C8—H80.9500
N1—C11.355 (4)C9—C101.363 (5)
N2—C61.384 (4)C9—H90.9500
N2—C51.389 (4)C10—H100.9500
N2—HN20.8988C11—H11A0.9800
N3—C61.343 (4)C11—H11B0.9800
N3—C101.363 (4)C11—H11C0.9800
C1—C21.369 (5)
N1—Cu1—N393.33 (11)C1—C2—C3118.4 (3)
N1—Cu1—O194.47 (10)C1—C2—H2120.8
N3—Cu1—O1157.45 (10)C3—C2—H2120.8
N1—Cu1—O2159.62 (10)C4—C3—C2119.6 (3)
N3—Cu1—O295.43 (10)C4—C3—H3120.2
O1—Cu1—O271.02 (9)C2—C3—H3120.2
N1—Cu1—O598.83 (10)C3—C4—C5119.1 (3)
N3—Cu1—O5102.96 (10)C3—C4—H4120.4
O1—Cu1—O596.70 (9)C5—C4—H4120.4
O2—Cu1—O597.08 (9)N1—C5—N2120.6 (3)
O4—S1—O3111.51 (14)N1—C5—C4121.5 (3)
O4—S1—O1112.62 (14)N2—C5—C4117.9 (3)
O3—S1—O1109.03 (13)N3—C6—N2120.8 (3)
O4—S1—O2112.73 (14)N3—C6—C7121.8 (3)
O3—S1—O2108.55 (13)N2—C6—C7117.4 (3)
O1—S1—O2101.91 (13)C8—C7—C6119.2 (3)
S1—O1—Cu193.46 (11)C8—C7—H7120.4
S1—O2—Cu192.35 (11)C6—C7—H7120.4
C11—O5—Cu1124.7 (2)C7—C8—C9119.3 (3)
C11—O5—HO5108.9C7—C8—H8120.3
Cu1—O5—HO5119.3C9—C8—H8120.3
C5—N1—C1118.5 (3)C10—C9—C8118.3 (3)
C5—N1—Cu1124.0 (2)C10—C9—H9120.8
C1—N1—Cu1116.7 (2)C8—C9—H9120.8
C6—N2—C5131.5 (3)C9—C10—N3123.3 (3)
C6—N2—HN2115.8C9—C10—H10118.3
C5—N2—HN2109.2N3—C10—H10118.3
C6—N3—C10118.1 (3)O5—C11—H11A109.5
C6—N3—Cu1124.0 (2)O5—C11—H11B109.5
C10—N3—Cu1117.0 (2)H11A—C11—H11B109.5
N1—C1—C2122.8 (3)O5—C11—H11C109.5
N1—C1—H1118.6H11A—C11—H11C109.5
C2—C1—H1118.6H11B—C11—H11C109.5
O4—S1—O1—Cu1−130.74 (12)N1—Cu1—N3—C10−168.3 (2)
O3—S1—O1—Cu1104.93 (12)O1—Cu1—N3—C1081.6 (4)
O2—S1—O1—Cu1−9.70 (13)O2—Cu1—N3—C1030.1 (2)
N1—Cu1—O1—S1−157.87 (12)O5—Cu1—N3—C10−68.4 (2)
N3—Cu1—O1—S1−48.0 (3)C5—N1—C1—C2−1.6 (5)
O2—Cu1—O1—S17.46 (10)Cu1—N1—C1—C2168.9 (3)
O5—Cu1—O1—S1102.68 (12)N1—C1—C2—C3−2.2 (5)
O4—S1—O2—Cu1130.54 (12)C1—C2—C3—C43.4 (5)
O3—S1—O2—Cu1−105.41 (12)C2—C3—C4—C5−0.8 (5)
O1—S1—O2—Cu19.58 (13)C1—N1—C5—N2−175.8 (3)
N1—Cu1—O2—S139.0 (3)Cu1—N1—C5—N214.4 (4)
N3—Cu1—O2—S1154.08 (12)C1—N1—C5—C44.3 (4)
O1—Cu1—O2—S1−7.42 (10)Cu1—N1—C5—C4−165.4 (2)
O5—Cu1—O2—S1−102.10 (11)C6—N2—C5—N16.5 (5)
N1—Cu1—O5—C11−122.5 (3)C6—N2—C5—C4−173.6 (3)
N3—Cu1—O5—C11141.9 (3)C3—C4—C5—N1−3.1 (5)
O1—Cu1—O5—C11−26.9 (3)C3—C4—C5—N2177.0 (3)
O2—Cu1—O5—C1144.7 (3)C10—N3—C6—N2179.7 (3)
N3—Cu1—N1—C5−24.1 (3)Cu1—N3—C6—N2−11.3 (4)
O1—Cu1—N1—C5134.7 (3)C10—N3—C6—C7−1.1 (4)
O2—Cu1—N1—C591.3 (4)Cu1—N3—C6—C7167.9 (2)
O5—Cu1—N1—C5−127.8 (2)C5—N2—C6—N3−8.2 (5)
N3—Cu1—N1—C1166.0 (2)C5—N2—C6—C7172.6 (3)
O1—Cu1—N1—C1−35.2 (2)N3—C6—C7—C80.8 (5)
O2—Cu1—N1—C1−78.6 (4)N2—C6—C7—C8−180.0 (3)
O5—Cu1—N1—C162.3 (2)C6—C7—C8—C90.4 (5)
N1—Cu1—N3—C622.6 (3)C7—C8—C9—C10−1.2 (5)
O1—Cu1—N3—C6−87.5 (4)C8—C9—C10—N30.9 (5)
O2—Cu1—N3—C6−139.0 (3)C6—N3—C10—C90.3 (5)
O5—Cu1—N3—C6122.4 (2)Cu1—N3—C10—C9−169.5 (3)
D—H···AD—HH···AD···AD—H···A
N2—HN2···O3i0.901.972.854 (3)169
O5—HO5···O3ii0.891.822.700 (3)168
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—HN2⋯O3i0.901.972.854 (3)169
O5—HO5⋯O3ii0.891.822.700 (3)168

Symmetry codes: (i) ; (ii) .

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