Literature DB >> 21587359

[μ-N,N,N',N'-Tetra-kis(2-pyridyl-meth-yl)butane-1,4-diamine]-bis-[dibromidocopper(II)].

Mark Bartholomä1, Hoi Cheung, Jon Zubieta.   

Abstract

The title dinuclear copper complex, [Cu(2)Br(4)(C(28)H(32)N(6))], is located on an inversion center. The unique Cu(II) ion is in a slightly distorted square-pyramidal environment in which the N atoms of a dipicolyl-amine group and a bromide ligand form the basal plane. The apical site is occupied by a second Br atom. While the Cu-N distances involving the pyridine N atoms are the same within experimental error, the Cu-N distance involving the tertiary N atom is slightly elongated. Due to the typical Jahn-Teller distortion of copper(II) complexes, the apical Cu-Br distance is elongated.

Entities:  

Year:  2010        PMID: 21587359      PMCID: PMC2983387          DOI: 10.1107/S1600536810034537

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For crystallographic data of tetra­kis­(pyridin-2-yl-meth­yl)alkyl-diamine compounds, see: Fujihara et al. (2004 ▶); Mam­banda et al. (2007 ▶). For the superoxide dismutase activity of iron complexes, see: Tamura et al. (2000 ▶). For dinuclear Pt complexes of similar ligands, see: Ertürk et al. (2007 ▶). For the use of the dipicolyl­amine moiety for binding of the M(CO)3 core (M = Re,99Tc), see: Bartholomä et al. (2009 ▶). For crystal structures closely related to the title compound, see: Bartholomä et al. (2010a ▶,b ▶,c ▶,d ▶).

Experimental

Crystal data

[Cu2Br4(C28H32N6)] M = 899.32 Monoclinic, a = 8.8613 (6) Å b = 14.249 (1) Å c = 11.9488 (9) Å β = 98.588 (2)° V = 1491.80 (18) Å3 Z = 2 Mo Kα radiation μ = 6.81 mm−1 T = 90 K 0.18 × 0.12 × 0.08 mm

Data collection

Bruker APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1998 ▶) T min = 0.374, T max = 0.612 14513 measured reflections 3623 independent reflections 3171 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.074 wR(F 2) = 0.147 S = 1.38 3623 reflections 181 parameters H-atom parameters constrained Δρmax = 1.38 e Å−3 Δρmin = −0.85 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT (Bruker, 1998 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 1999 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810034537/lh5106sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810034537/lh5106Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cu2Br4(C28H32N6)]F(000) = 880
Mr = 899.32Dx = 2.002 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2666 reflections
a = 8.8613 (6) Åθ = 2.7–27.2°
b = 14.249 (1) ŵ = 6.81 mm1
c = 11.9488 (9) ÅT = 90 K
β = 98.588 (2)°Plates, green
V = 1491.80 (18) Å30.18 × 0.12 × 0.08 mm
Z = 2
Bruker APEX CCD diffractometer3623 independent reflections
Radiation source: fine-focus sealed tube3171 reflections with I > 2σ(I)
graphiteRint = 0.052
Detector resolution: 512 pixels mm-1θmax = 28.1°, θmin = 2.2°
φ and ω scansh = −10→11
Absorption correction: multi-scan (SADABS; Bruker, 1998)k = −18→18
Tmin = 0.374, Tmax = 0.612l = −15→15
14513 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.074Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.147H-atom parameters constrained
S = 1.38w = 1/[σ2(Fo2) + (0.042P)2 + 10.8322P] where P = (Fo2 + 2Fc2)/3
3623 reflections(Δ/σ)max = 0.001
181 parametersΔρmax = 1.38 e Å3
0 restraintsΔρmin = −0.85 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cu10.35669 (10)0.75522 (6)0.35899 (7)0.0111 (2)
Br10.21437 (9)0.82045 (5)0.15805 (6)0.01711 (19)
Br20.29274 (9)0.87831 (5)0.48204 (6)0.01847 (19)
N10.4360 (6)0.6374 (4)0.2878 (5)0.0087 (11)
N20.1789 (7)0.6693 (4)0.3702 (5)0.0101 (11)
N30.5695 (6)0.8000 (4)0.3456 (5)0.0099 (11)
C10.2983 (8)0.5899 (5)0.2279 (6)0.0138 (14)
H1A0.32140.52300.21570.017*
H1B0.26760.61950.15300.017*
C20.1707 (8)0.5972 (5)0.2964 (6)0.0118 (13)
C30.0522 (8)0.5333 (5)0.2869 (6)0.0161 (15)
H30.04700.48370.23340.019*
C4−0.0587 (9)0.5423 (5)0.3564 (7)0.0208 (16)
H4−0.14150.49940.35070.025*
C5−0.0474 (9)0.6153 (6)0.4350 (7)0.0214 (16)
H5−0.12010.62190.48540.026*
C60.0718 (8)0.6775 (5)0.4377 (6)0.0159 (14)
H60.07840.72840.48960.019*
C70.5359 (8)0.6749 (5)0.2094 (6)0.0136 (14)
H7A0.47290.70020.14060.016*
H7B0.60100.62420.18630.016*
C80.6340 (8)0.7514 (5)0.2682 (6)0.0132 (14)
C90.7788 (9)0.7733 (5)0.2435 (6)0.0169 (15)
H90.82060.73980.18660.020*
C100.8606 (8)0.8445 (5)0.3033 (6)0.0167 (15)
H100.96030.86000.28900.020*
C110.7950 (9)0.8930 (5)0.3845 (6)0.0186 (15)
H110.84920.94210.42670.022*
C120.6489 (9)0.8689 (5)0.4032 (6)0.0147 (14)
H120.60410.90240.45870.018*
C130.5282 (8)0.5732 (5)0.3704 (6)0.0111 (13)
H13A0.62090.60730.40520.013*
H13B0.56200.51930.32810.013*
C140.4471 (7)0.5353 (4)0.4650 (5)0.0096 (13)
H14A0.35060.50420.43230.011*
H14B0.42240.58750.51390.011*
U11U22U33U12U13U23
Cu10.0124 (4)0.0090 (4)0.0126 (4)0.0003 (3)0.0041 (3)−0.0005 (3)
Br10.0196 (4)0.0162 (4)0.0155 (3)0.0032 (3)0.0024 (3)0.0062 (3)
Br20.0249 (4)0.0131 (3)0.0198 (4)−0.0001 (3)0.0110 (3)−0.0037 (3)
N10.009 (3)0.008 (3)0.011 (3)−0.002 (2)0.004 (2)0.000 (2)
N20.014 (3)0.009 (3)0.008 (2)−0.002 (2)0.003 (2)0.003 (2)
N30.010 (3)0.009 (3)0.011 (3)0.002 (2)0.003 (2)0.004 (2)
C10.018 (4)0.012 (3)0.012 (3)−0.003 (3)0.003 (3)−0.006 (3)
C20.013 (3)0.010 (3)0.011 (3)0.003 (3)−0.003 (3)0.005 (2)
C30.017 (4)0.010 (3)0.018 (3)−0.002 (3)−0.006 (3)−0.002 (3)
C40.013 (4)0.019 (4)0.032 (4)−0.002 (3)0.005 (3)0.005 (3)
C50.014 (4)0.027 (4)0.025 (4)0.001 (3)0.007 (3)0.009 (3)
C60.014 (4)0.018 (4)0.015 (3)0.003 (3)0.003 (3)0.001 (3)
C70.014 (4)0.016 (3)0.013 (3)0.001 (3)0.009 (3)−0.004 (3)
C80.019 (4)0.011 (3)0.010 (3)−0.001 (3)0.003 (3)0.005 (3)
C90.018 (4)0.019 (4)0.016 (3)0.003 (3)0.007 (3)0.005 (3)
C100.011 (3)0.015 (3)0.024 (4)−0.004 (3)0.002 (3)0.009 (3)
C110.019 (4)0.015 (3)0.020 (4)−0.001 (3)−0.002 (3)0.001 (3)
C120.021 (4)0.008 (3)0.016 (3)0.002 (3)0.003 (3)0.007 (3)
C130.010 (3)0.010 (3)0.015 (3)0.002 (3)0.005 (3)0.004 (2)
C140.007 (3)0.008 (3)0.013 (3)0.000 (2)0.001 (2)0.005 (2)
Cu1—N22.015 (6)C5—C61.375 (11)
Cu1—N32.019 (6)C5—H50.9500
Cu1—N12.053 (5)C6—H60.9500
Cu1—Br22.4099 (11)C7—C81.502 (10)
Cu1—Br12.7045 (11)C7—H7A0.9900
N1—C71.482 (8)C7—H7B0.9900
N1—C11.482 (9)C8—C91.394 (10)
N1—C131.495 (8)C9—C101.382 (11)
N2—C61.340 (9)C9—H90.9500
N2—C21.349 (9)C10—C111.388 (11)
N3—C121.337 (9)C10—H100.9500
N3—C81.349 (9)C11—C121.389 (11)
C1—C21.496 (10)C11—H110.9500
C1—H1A0.9900C12—H120.9500
C1—H1B0.9900C13—C141.526 (9)
C2—C31.381 (10)C13—H13A0.9900
C3—C41.384 (11)C13—H13B0.9900
C3—H30.9500C14—C14i1.536 (12)
C4—C51.395 (12)C14—H14A0.9900
C4—H40.9500C14—H14B0.9900
N2—Cu1—N3161.0 (2)C6—C5—H5120.8
N2—Cu1—N181.4 (2)C4—C5—H5120.8
N3—Cu1—N181.0 (2)N2—C6—C5122.7 (7)
N2—Cu1—Br298.29 (16)N2—C6—H6118.7
N3—Cu1—Br297.22 (16)C5—C6—H6118.7
N1—Cu1—Br2166.96 (16)N1—C7—C8109.0 (5)
N2—Cu1—Br190.12 (16)N1—C7—H7A109.9
N3—Cu1—Br197.95 (15)C8—C7—H7A109.9
N1—Cu1—Br193.22 (16)N1—C7—H7B109.9
Br2—Cu1—Br199.82 (4)C8—C7—H7B109.9
C7—N1—C1112.7 (5)H7A—C7—H7B108.3
C7—N1—C13108.6 (5)N3—C8—C9121.9 (7)
C1—N1—C13111.7 (5)N3—C8—C7114.7 (6)
C7—N1—Cu1103.9 (4)C9—C8—C7123.4 (6)
C1—N1—Cu1105.4 (4)C10—C9—C8118.9 (7)
C13—N1—Cu1114.4 (4)C10—C9—H9120.6
C6—N2—C2119.0 (6)C8—C9—H9120.6
C6—N2—Cu1128.2 (5)C9—C10—C11119.0 (7)
C2—N2—Cu1112.7 (4)C9—C10—H10120.5
C12—N3—C8119.0 (6)C11—C10—H10120.5
C12—N3—Cu1128.1 (5)C10—C11—C12119.2 (7)
C8—N3—Cu1112.9 (5)C10—C11—H11120.4
N1—C1—C2109.8 (5)C12—C11—H11120.4
N1—C1—H1A109.7N3—C12—C11122.0 (7)
C2—C1—H1A109.7N3—C12—H12119.0
N1—C1—H1B109.7C11—C12—H12119.0
C2—C1—H1B109.7N1—C13—C14115.7 (5)
H1A—C1—H1B108.2N1—C13—H13A108.4
N2—C2—C3121.5 (7)C14—C13—H13A108.4
N2—C2—C1116.0 (6)N1—C13—H13B108.4
C3—C2—C1122.5 (6)C14—C13—H13B108.4
C2—C3—C4119.2 (7)H13A—C13—H13B107.4
C2—C3—H3120.4C13—C14—C14i108.6 (7)
C4—C3—H3120.4C13—C14—H14A110.0
C3—C4—C5119.2 (7)C14i—C14—H14A110.0
C3—C4—H4120.4C13—C14—H14B110.0
C5—C4—H4120.4C14i—C14—H14B110.0
C6—C5—C4118.3 (7)H14A—C14—H14B108.3
N2—Cu1—N1—C7151.6 (4)Cu1—N2—C2—C3−176.6 (5)
N3—Cu1—N1—C7−35.6 (4)C6—N2—C2—C1−177.1 (6)
Br2—Cu1—N1—C7−118.9 (7)Cu1—N2—C2—C14.5 (7)
Br1—Cu1—N1—C762.0 (4)N1—C1—C2—N224.0 (8)
N2—Cu1—N1—C132.9 (4)N1—C1—C2—C3−154.9 (6)
N3—Cu1—N1—C1−154.3 (4)N2—C2—C3—C4−1.4 (10)
Br2—Cu1—N1—C1122.4 (7)C1—C2—C3—C4177.4 (7)
Br1—Cu1—N1—C1−56.7 (4)C2—C3—C4—C5−0.5 (11)
N2—Cu1—N1—C13−90.2 (4)C3—C4—C5—C62.1 (11)
N3—Cu1—N1—C1382.6 (4)C2—N2—C6—C5−0.2 (10)
Br2—Cu1—N1—C13−0.7 (10)Cu1—N2—C6—C5178.0 (5)
Br1—Cu1—N1—C13−179.8 (4)C4—C5—C6—N2−1.7 (11)
N3—Cu1—N2—C6137.8 (7)C1—N1—C7—C8158.0 (6)
N1—Cu1—N2—C6160.1 (6)C13—N1—C7—C8−77.8 (7)
Br2—Cu1—N2—C6−6.7 (6)Cu1—N1—C7—C844.4 (6)
Br1—Cu1—N2—C6−106.7 (6)C12—N3—C8—C9−2.4 (10)
N3—Cu1—N2—C2−44.0 (9)Cu1—N3—C8—C9177.9 (5)
N1—Cu1—N2—C2−21.7 (4)C12—N3—C8—C7179.3 (6)
Br2—Cu1—N2—C2171.5 (4)Cu1—N3—C8—C7−0.3 (7)
Br1—Cu1—N2—C271.6 (4)N1—C7—C8—N3−30.7 (8)
N2—Cu1—N3—C12−136.2 (7)N1—C7—C8—C9151.1 (6)
N1—Cu1—N3—C12−158.5 (6)N3—C8—C9—C102.5 (10)
Br2—Cu1—N3—C128.4 (6)C7—C8—C9—C10−179.4 (7)
Br1—Cu1—N3—C12109.4 (5)C8—C9—C10—C11−1.1 (10)
N2—Cu1—N3—C843.4 (9)C9—C10—C11—C12−0.2 (10)
N1—Cu1—N3—C821.0 (4)C8—N3—C12—C111.1 (10)
Br2—Cu1—N3—C8−172.0 (4)Cu1—N3—C12—C11−179.4 (5)
Br1—Cu1—N3—C8−71.0 (4)C10—C11—C12—N30.2 (10)
C7—N1—C1—C2−151.4 (6)C7—N1—C13—C14174.3 (6)
C13—N1—C1—C286.1 (7)C1—N1—C13—C14−60.8 (7)
Cu1—N1—C1—C2−38.8 (6)Cu1—N1—C13—C1458.8 (7)
C6—N2—C2—C31.8 (10)N1—C13—C14—C14i175.1 (6)
Table 1

Selected bond lengths (Å)

Cu1—N22.015 (6)
Cu1—N32.019 (6)
Cu1—N12.053 (5)
Cu1—Br22.4099 (11)
Cu1—Br12.7045 (11)
  8 in total

1.  One-dimensional C-H...N hydrogen-bonded polymers in flexible tetrapyridyl systems.

Authors:  Allen Mambanda; Deogratius Jaganyi; Orde Q Munro
Journal:  Acta Crystallogr C       Date:  2007-10-24       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  [μ-N,N,N',N'-Tetra-kis-(2-pyridyl-meth-yl)pentane-1,5-diamine]-bis-[dichlorido-copper(II)] sesquihydrate.

Authors:  Mark Bartholomä; Hoi Cheung; Kari Darling; Jon Zubieta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04

4.  [μ-N,N,N',N'-Tetra-kis(2-pyridyl-meth-yl)butane-1,4-diamine]-bis-[diacetato-cadmium(II)] nona-hydrate.

Authors:  Mark Bartholomä; Hoi Cheung; Jon Zubieta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04

Review 5.  Single amino acid chelates (SAAC): a strategy for the design of technetium and rhenium radiopharmaceuticals.

Authors:  Mark Bartholomä; John Valliant; Kevin P Maresca; John Babich; Jon Zubieta
Journal:  Chem Commun (Camb)       Date:  2008-12-01       Impact factor: 6.222

6.  Influence of the bridging ligand on the substitution behaviour of dinuclear Pt(II) complexes. An experimental and theoretical approach.

Authors:  Hakan Ertürk; Andreas Hofmann; Ralph Puchta; Rudi van Eldik
Journal:  Dalton Trans       Date:  2007-04-04       Impact factor: 4.390

7.  [μ-N,N,N',N'-Tetra-kis(2-pyridyl-meth-yl)butane-1,4-diamine]-bis-[dichlorido-copper(II)] trihydrate.

Authors:  Mark Bartholomä; Hoi Cheung; Jon Zubieta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04

8.  [μ-N,N,N',N'-Tetra-kis(2-pyridyl-meth-yl)butane-1,4-diamine]-bis-[dinitratocadmium(II)].

Authors:  Mark Bartholomä; Hoi Cheung; Jon Zubieta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04
  8 in total
  5 in total

1.  [μ-N,N,N',N'-Tetra-kis-(2-pyridyl-meth-yl)pentane-1,5-diamine]-bis-[dichlorido-copper(II)] sesquihydrate.

Authors:  Mark Bartholomä; Hoi Cheung; Kari Darling; Jon Zubieta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04

2.  [μ-N,N,N',N'-Tetra-kis(2-pyridyl-meth-yl)butane-1,4-diamine]-bis-[diacetato-cadmium(II)] nona-hydrate.

Authors:  Mark Bartholomä; Hoi Cheung; Jon Zubieta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04

3.  (Di-2-pyridyl-amine)-(methanol)sulfato-copper(II).

Authors:  Paul Deburgomaster; Jon Zubieta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-02

4.  [μ-N,N,N',N'-Tetra-kis(2-pyridyl-meth-yl)butane-1,4-diamine]-bis-[dichlorido-copper(II)] trihydrate.

Authors:  Mark Bartholomä; Hoi Cheung; Jon Zubieta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04

5.  [μ-N,N,N',N'-Tetra-kis(2-pyridyl-meth-yl)butane-1,4-diamine]-bis-[dinitratocadmium(II)].

Authors:  Mark Bartholomä; Hoi Cheung; Jon Zubieta
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-09-04
  5 in total

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