Literature DB >> 21588776

rac-(E)-3-[1-(2-Chloro-phen-yl)eth-yl]-5-methyl-N-nitro-1,3,5-oxadiazinan-4-imine.

Cong-Cong Li1, Yuan-Yuan Zhong, Liang-Zhong Xu.   

Abstract

In the title compound, C(12)H(15)ClN(4)O(3), which has potential insecticidal activity, the oxadiazine ring and the benzene ring make a dihedral angle of 84.63 (2)° to one another. The crystal packing involves weak inter-molecular C-H⋯O hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588776      PMCID: PMC3008131          DOI: 10.1107/S1600536810034343

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of oxadiazine derivatives, see: Maienfisch & Huerlimann (1994 ▶); Gsell & Maienfisch (1998 ▶). For the synthesis, see: Gottfied et al. (2001 ▶). For related structures, see: Chopra et al. (2004 ▶); Kang et al. (2008 ▶); Zhong et al. (2010 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C12H15ClN4O3 M = 298.73 Monoclinic, a = 17.259 (4) Å b = 6.9157 (14) Å c = 12.169 (2) Å β = 109.63 (3)° V = 1368.0 (5) Å3 Z = 4 Cu Kα radiation μ = 2.61 mm−1 T = 113 K 0.26 × 0.22 × 0.18 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (CrystalClear; Rigaku, 2005 ▶) T min = 0.550, T max = 0.651 12087 measured reflections 2590 independent reflections 2562 reflections with I > 2σ(I) R int = 0.054

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.104 S = 1.08 2590 reflections 184 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.37 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810034343/zs2061sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810034343/zs2061Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H15ClN4O3F(000) = 624
Mr = 298.73Dx = 1.450 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54187 Å
Hall symbol: -P 2ybcCell parameters from 1058 reflections
a = 17.259 (4) Åθ = 27.5–71.9°
b = 6.9157 (14) ŵ = 2.61 mm1
c = 12.169 (2) ÅT = 113 K
β = 109.63 (3)°Block, colorless
V = 1368.0 (5) Å30.26 × 0.22 × 0.18 mm
Z = 4
Rigaku Saturn diffractometer2590 independent reflections
Radiation source: fine-focus sealed tube2562 reflections with I > 2σ(I)
graphiteRint = 0.054
Detector resolution: 14.63 pixels mm-1θmax = 72.1°, θmin = 2.7°
ω scansh = −20→21
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005)k = −8→8
Tmin = 0.550, Tmax = 0.651l = −13→14
12087 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.039H-atom parameters constrained
wR(F2) = 0.104w = 1/[σ2(Fo2) + (0.058P)2 + 0.6637P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max = 0.001
2590 reflectionsΔρmax = 0.26 e Å3
184 parametersΔρmin = −0.37 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0057 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.36163 (2)0.37729 (6)−0.00540 (3)0.02744 (17)
N10.09670 (7)0.33360 (16)−0.04098 (10)0.0152 (3)
N20.21260 (7)0.48468 (16)0.08081 (10)0.0146 (3)
N30.19653 (7)0.15435 (16)0.10592 (10)0.0165 (3)
N40.15382 (7)0.09523 (17)0.17188 (10)0.0172 (3)
O10.09734 (6)0.67120 (14)−0.01841 (9)0.0180 (2)
O20.09602 (7)0.19372 (16)0.18398 (9)0.0247 (3)
O30.17457 (7)−0.06237 (15)0.22426 (9)0.0238 (3)
C10.06227 (8)0.5189 (2)−0.09525 (12)0.0171 (3)
H1A0.07400.5363−0.16890.021*
H1B0.00180.5188−0.11390.021*
C20.16607 (8)0.32676 (19)0.04897 (12)0.0138 (3)
C30.18404 (8)0.66306 (19)0.01450 (13)0.0172 (3)
H3A0.20890.77670.06300.021*
H3B0.20070.6644−0.05580.021*
C40.04698 (9)0.1625 (2)−0.08861 (13)0.0196 (3)
H4A0.08010.0459−0.06110.029*
H4B0.02850.1670−0.17400.029*
H4C−0.00100.1599−0.06260.029*
C50.28920 (8)0.48416 (19)0.18389 (12)0.0171 (3)
H50.31410.35240.18940.020*
C60.26984 (10)0.5185 (2)0.29596 (12)0.0225 (3)
H6A0.32120.51980.36270.034*
H6B0.23420.41470.30610.034*
H6C0.24180.64300.29100.034*
C70.34952 (8)0.6269 (2)0.16156 (13)0.0184 (3)
C80.38573 (9)0.5900 (2)0.07689 (13)0.0209 (3)
C90.44068 (9)0.7161 (2)0.05401 (14)0.0257 (4)
H90.46400.6869−0.00450.031*
C100.46123 (10)0.8863 (2)0.11817 (16)0.0305 (4)
H100.49970.97330.10480.037*
C110.42544 (10)0.9287 (2)0.20160 (15)0.0308 (4)
H110.43891.04590.24450.037*
C120.37004 (9)0.8007 (2)0.22283 (13)0.0247 (3)
H120.34570.83200.28000.030*
U11U22U33U12U13U23
Cl10.0282 (2)0.0206 (2)0.0376 (3)−0.00083 (13)0.01641 (18)−0.00617 (14)
N10.0166 (6)0.0106 (5)0.0167 (6)−0.0008 (4)0.0035 (4)−0.0001 (4)
N20.0146 (5)0.0095 (5)0.0179 (6)0.0011 (4)0.0029 (4)0.0012 (4)
N30.0171 (6)0.0104 (5)0.0226 (6)0.0015 (4)0.0075 (5)0.0038 (4)
N40.0216 (6)0.0110 (5)0.0182 (6)0.0015 (5)0.0058 (5)0.0019 (4)
O10.0167 (5)0.0119 (5)0.0225 (5)0.0038 (4)0.0030 (4)−0.0010 (4)
O20.0286 (6)0.0209 (6)0.0301 (6)0.0107 (4)0.0170 (5)0.0072 (4)
O30.0338 (6)0.0117 (5)0.0275 (6)0.0059 (4)0.0123 (4)0.0083 (4)
C10.0168 (6)0.0134 (6)0.0183 (7)0.0022 (5)0.0021 (5)0.0009 (5)
C20.0156 (6)0.0100 (6)0.0173 (6)0.0016 (5)0.0077 (5)−0.0003 (5)
C30.0165 (7)0.0099 (6)0.0226 (7)0.0010 (5)0.0032 (5)0.0035 (5)
C40.0204 (7)0.0144 (6)0.0222 (7)−0.0049 (5)0.0048 (6)−0.0024 (5)
C50.0163 (6)0.0123 (6)0.0190 (7)0.0019 (5)0.0011 (5)0.0014 (5)
C60.0274 (7)0.0183 (7)0.0192 (7)0.0004 (6)0.0042 (6)0.0019 (5)
C70.0149 (6)0.0136 (7)0.0216 (7)0.0010 (5)−0.0006 (5)0.0026 (5)
C80.0157 (6)0.0157 (7)0.0270 (8)0.0018 (5)0.0015 (6)0.0030 (6)
C90.0182 (7)0.0267 (8)0.0298 (8)0.0013 (6)0.0047 (6)0.0093 (6)
C100.0211 (8)0.0248 (8)0.0372 (9)−0.0083 (6)−0.0013 (7)0.0108 (7)
C110.0302 (8)0.0187 (7)0.0325 (9)−0.0086 (7)−0.0042 (7)0.0003 (6)
C120.0249 (7)0.0185 (7)0.0242 (7)−0.0029 (6)−0.0004 (6)−0.0013 (6)
Cl1—C81.7492 (16)C4—H4B0.9800
N1—C21.324 (2)C4—H4C0.9800
N1—C41.4621 (17)C5—C71.524 (2)
N1—C11.4721 (17)C5—C61.528 (2)
N2—C21.3336 (18)C5—H51.0000
N2—C31.4658 (16)C6—H6A0.9800
N2—C51.4856 (17)C6—H6B0.9800
N3—N41.3237 (17)C6—H6C0.9800
N3—C21.3904 (17)C7—C121.396 (2)
N4—O31.2526 (15)C7—C81.396 (2)
N4—O21.2567 (16)C8—C91.384 (2)
O1—C11.4037 (17)C9—C101.391 (2)
O1—C31.4143 (18)C9—H90.9500
C1—H1A0.9900C10—C111.386 (3)
C1—H1B0.9900C10—H100.9500
C3—H3A0.9900C11—C121.389 (2)
C3—H3B0.9900C11—H110.9500
C4—H4A0.9800C12—H120.9500
C2—N1—C4123.09 (11)H4B—C4—H4C109.5
C2—N1—C1121.23 (11)N2—C5—C7108.38 (11)
C4—N1—C1115.58 (11)N2—C5—C6110.73 (11)
C2—N2—C3118.10 (11)C7—C5—C6115.21 (12)
C2—N2—C5121.43 (11)N2—C5—H5107.4
C3—N2—C5120.40 (11)C7—C5—H5107.4
N4—N3—C2111.90 (11)C6—C5—H5107.4
O3—N4—O2120.96 (12)C5—C6—H6A109.5
O3—N4—N3117.07 (11)C5—C6—H6B109.5
O2—N4—N3121.95 (11)H6A—C6—H6B109.5
C1—O1—C3109.70 (10)C5—C6—H6C109.5
O1—C1—N1109.62 (11)H6A—C6—H6C109.5
O1—C1—H1A109.7H6B—C6—H6C109.5
N1—C1—H1A109.7C12—C7—C8117.08 (14)
O1—C1—H1B109.7C12—C7—C5121.90 (14)
N1—C1—H1B109.7C8—C7—C5121.02 (13)
H1A—C1—H1B108.2C9—C8—C7122.70 (14)
N1—C2—N2119.99 (12)C9—C8—Cl1117.52 (13)
N1—C2—N3121.87 (12)C7—C8—Cl1119.78 (11)
N2—C2—N3117.88 (12)C8—C9—C10118.89 (16)
O1—C3—N2108.51 (11)C8—C9—H9120.6
O1—C3—H3A110.0C10—C9—H9120.6
N2—C3—H3A110.0C11—C10—C9119.87 (15)
O1—C3—H3B110.0C11—C10—H10120.1
N2—C3—H3B110.0C9—C10—H10120.1
H3A—C3—H3B108.4C10—C11—C12120.38 (15)
N1—C4—H4A109.5C10—C11—H11119.8
N1—C4—H4B109.5C12—C11—H11119.8
H4A—C4—H4B109.5C11—C12—C7121.07 (16)
N1—C4—H4C109.5C11—C12—H12119.5
H4A—C4—H4C109.5C7—C12—H12119.5
C2—N3—N4—O3177.78 (11)C3—N2—C5—C7−33.89 (16)
C2—N3—N4—O2−3.68 (18)C2—N2—C5—C6−83.61 (15)
C3—O1—C1—N155.36 (14)C3—N2—C5—C693.38 (14)
C2—N1—C1—O1−18.08 (18)N2—C5—C7—C12110.06 (14)
C4—N1—C1—O1158.55 (12)C6—C5—C7—C12−14.60 (19)
C4—N1—C2—N2173.37 (12)N2—C5—C7—C8−68.88 (16)
C1—N1—C2—N2−10.3 (2)C6—C5—C7—C8166.46 (13)
C4—N1—C2—N3−0.6 (2)C12—C7—C8—C90.9 (2)
C1—N1—C2—N3175.73 (12)C5—C7—C8—C9179.93 (13)
C3—N2—C2—N10.66 (19)C12—C7—C8—Cl1−178.83 (10)
C5—N2—C2—N1177.72 (12)C5—C7—C8—Cl10.15 (18)
C3—N2—C2—N3174.91 (11)C7—C8—C9—C100.4 (2)
C5—N2—C2—N3−8.03 (19)Cl1—C8—C9—C10−179.86 (11)
N4—N3—C2—N1−73.97 (16)C8—C9—C10—C11−1.3 (2)
N4—N3—C2—N2111.90 (14)C9—C10—C11—C121.0 (2)
C1—O1—C3—N2−64.67 (14)C10—C11—C12—C70.4 (2)
C2—N2—C3—O136.13 (16)C8—C7—C12—C11−1.3 (2)
C5—N2—C3—O1−140.96 (12)C5—C7—C12—C11179.72 (13)
C2—N2—C5—C7149.11 (13)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O2i0.992.523.2817 (18)134.
C1—H1A···O3i0.992.503.396 (2)150.
C1—H1B···O2ii0.992.563.2555 (18)127.
C3—H3A···O3iii0.992.493.2294 (19)131.
C4—H4B···O2i0.982.573.3070 (19)132.
C4—H4C···O1ii0.982.493.377 (2)150.
C6—H6C···O3iii0.982.353.3020 (19)164.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯O2i0.992.523.2817 (18)134
C1—H1A⋯O3i0.992.503.396 (2)150
C1—H1B⋯O2ii0.992.563.2555 (18)127
C3—H3A⋯O3iii0.992.493.2294 (19)131
C4—H4B⋯O2i0.982.573.3070 (19)132
C4—H4C⋯O1ii0.982.493.377 (2)150
C6—H6C⋯O3iii0.982.353.3020 (19)164

Symmetry codes: (i) ; (ii) ; (iii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-[(E)-3,7-Dimethyl-octa-2,6-dien-yl]-5-methyl-N-nitro-1,3,5-oxadiazinan-4-imine.

Authors:  Tie-Niu Kang; Li Zhang; Yun Ling; Xin-Ling Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-24

3.  (E)-3-[1-(2,4-Difluoro-phen-yl)eth-yl]-5-methyl-N-nitro-1,3,5-oxadiazinan-4-imine.

Authors:  Yuan-Yuan Zhong; Cong-Cong Li; Liang-Zhong Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-10
  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.