Literature DB >> 21588297

(E)-3-[1-(2,4-Difluoro-phen-yl)eth-yl]-5-methyl-N-nitro-1,3,5-oxadiazinan-4-imine.

Yuan-Yuan Zhong1, Cong-Cong Li, Liang-Zhong Xu.   

Abstract

The 1,3,5-oxadiazinane ring in the title compound, C(12)H(14)F(2)N(4)O(3), has a conformation inter-mediate between half-chair and screw-boat. The crystal structure is stabilized by weak inter-molecular C-H⋯O hydrogen bonds. Weak π-π inter-actions are indicated by the relatively long centroid-centroid distance of 3.9199 (12) Å and inter-planar distance of 3.803 Å between symmetry-related benzene rings from neighbouring mol-ecules.

Entities:  

Year:  2010        PMID: 21588297      PMCID: PMC3007461          DOI: 10.1107/S1600536810026425

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

An important type of insecticide, oxadiazine compounds are highly efficient and of low toxicity, see: Gsell et al.(1998 ▶). The title compound has been used to synthesize many similar insecticides, see: Maienfisch et al. (1994 ▶). For the preparation of the title compound, see: Gottfied et al.(2001 ▶). For the related structures, see: Chopra et al., (2004 ▶); Kang et al. (2008 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶).

Experimental

Crystal data

C12H14F2N4O3 M = 300.27 Monoclinic, a = 13.385 (3) Å b = 6.7470 (13) Å c = 15.073 (3) Å β = 101.25 (3)° V = 1335.0 (5) Å3 Z = 4 Cu Kα radiation μ = 1.11 mm−1 T = 113 K 0.26 × 0.24 × 0.22 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: numerical (CrystalClear; Rigaku, 2005 ▶) T min = 0.762, T max = 0.793 13266 measured reflections 2567 independent reflections 2168 reflections with I > 2σ(I) R int = 0.061

Refinement

R[F 2 > 2σ(F 2)] = 0.040 wR(F 2) = 0.106 S = 1.09 2567 reflections 193 parameters H-atom parameters constrained Δρmax = 0.31 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrystalClear (Rigaku, 2005 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEPIII (Burnett & Johnson, 1996 ▶) and ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810026425/dn2586sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810026425/dn2586Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H14F2N4O3F(000) = 624
Mr = 300.27Dx = 1.494 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54187 Å
Hall symbol: -P 2ybcCell parameters from 1502 reflections
a = 13.385 (3) Åθ = 27.7–72.0°
b = 6.7470 (13) ŵ = 1.11 mm1
c = 15.073 (3) ÅT = 113 K
β = 101.25 (3)°Prism, colorless
V = 1335.0 (5) Å30.26 × 0.24 × 0.22 mm
Z = 4
Rigaku Saturn diffractometer2567 independent reflections
Radiation source: fine-focus sealed tube2168 reflections with I > 2σ(I)
graphiteRint = 0.061
Detector resolution: 14.63 pixels mm-1θmax = 72.3°, θmin = 3.4°
ω scansh = −16→15
Absorption correction: numerical (CrystalClear; Rigaku, 2005)k = −7→7
Tmin = 0.762, Tmax = 0.793l = −17→18
13266 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.040H-atom parameters constrained
wR(F2) = 0.106w = 1/[σ2(Fo2) + (0.0692P)2 + 0.0616P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max < 0.001
2567 reflectionsΔρmax = 0.31 e Å3
193 parametersΔρmin = −0.30 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0131 (11)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
F10.40932 (6)0.24125 (13)0.33990 (6)0.0436 (3)
F20.67967 (7)0.68795 (18)0.36250 (8)0.0676 (4)
O10.23598 (6)0.67016 (13)0.16461 (6)0.0279 (2)
O20.04094 (7)0.32758 (14)0.35714 (7)0.0374 (3)
O30.09896 (7)0.03447 (15)0.39933 (6)0.0365 (3)
N10.13558 (7)0.38098 (16)0.16500 (6)0.0230 (2)
N20.21022 (7)0.52761 (15)0.29879 (6)0.0235 (2)
N30.16278 (8)0.18616 (15)0.29436 (7)0.0272 (3)
N40.09994 (7)0.18567 (15)0.35200 (7)0.0246 (3)
C10.16316 (9)0.5470 (2)0.11134 (8)0.0274 (3)
H1A0.19100.49460.05980.033*
H1B0.10150.62540.08660.033*
C20.16748 (8)0.36822 (18)0.25358 (8)0.0220 (3)
C30.20435 (10)0.71093 (19)0.24732 (8)0.0261 (3)
H3A0.13360.76180.23520.031*
H3B0.24920.81260.28200.031*
C40.07765 (10)0.2205 (2)0.11312 (9)0.0302 (3)
H4A0.12370.11100.10650.045*
H4B0.04550.26970.05320.045*
H4C0.02500.17360.14500.045*
C50.27466 (9)0.51446 (19)0.39058 (7)0.0240 (3)
H50.27410.37340.41080.029*
C60.22926 (10)0.6404 (2)0.45658 (8)0.0330 (3)
H6A0.22350.77810.43550.050*
H6B0.27350.63440.51650.050*
H6C0.16150.58970.46020.050*
C70.38383 (9)0.5676 (2)0.38557 (8)0.0265 (3)
C80.44655 (10)0.4260 (2)0.35833 (8)0.0299 (3)
C90.54602 (10)0.4619 (3)0.34965 (9)0.0401 (4)
H90.58700.36150.33070.048*
C100.58224 (10)0.6488 (3)0.36972 (11)0.0442 (4)
C110.52547 (12)0.7976 (3)0.39754 (12)0.0480 (4)
H110.55330.92610.41120.058*
C120.42598 (11)0.7545 (2)0.40513 (10)0.0380 (3)
H120.38560.85570.42420.046*
U11U22U33U12U13U23
F10.0385 (5)0.0347 (5)0.0584 (6)0.0058 (4)0.0117 (4)−0.0135 (4)
F20.0272 (5)0.0938 (9)0.0812 (8)−0.0096 (5)0.0090 (4)0.0320 (6)
O10.0302 (5)0.0302 (5)0.0240 (4)−0.0087 (4)0.0076 (3)0.0012 (3)
O20.0327 (5)0.0287 (6)0.0561 (6)0.0059 (4)0.0219 (4)0.0054 (4)
O30.0432 (6)0.0312 (6)0.0361 (5)−0.0011 (4)0.0104 (4)0.0155 (4)
N10.0241 (5)0.0235 (6)0.0218 (5)−0.0033 (4)0.0051 (4)−0.0011 (4)
N20.0298 (5)0.0210 (6)0.0193 (5)−0.0006 (4)0.0041 (4)0.0004 (4)
N30.0332 (6)0.0203 (6)0.0312 (6)0.0007 (4)0.0139 (4)0.0022 (4)
N40.0255 (5)0.0232 (6)0.0249 (5)−0.0001 (4)0.0043 (4)0.0041 (4)
C10.0324 (6)0.0294 (7)0.0201 (6)−0.0057 (5)0.0048 (4)0.0016 (5)
C20.0220 (5)0.0225 (6)0.0229 (6)0.0016 (4)0.0082 (4)0.0000 (4)
C30.0327 (6)0.0222 (7)0.0228 (6)−0.0016 (5)0.0038 (5)0.0012 (4)
C40.0280 (6)0.0294 (7)0.0317 (6)−0.0035 (5)0.0022 (5)−0.0082 (5)
C50.0274 (6)0.0251 (7)0.0193 (6)0.0029 (5)0.0038 (4)0.0007 (4)
C60.0339 (7)0.0420 (8)0.0227 (6)0.0089 (6)0.0043 (5)−0.0043 (5)
C70.0283 (6)0.0286 (7)0.0218 (6)0.0020 (5)0.0030 (4)0.0023 (5)
C80.0297 (6)0.0325 (8)0.0271 (6)0.0030 (5)0.0041 (5)0.0006 (5)
C90.0291 (7)0.0560 (10)0.0356 (7)0.0096 (7)0.0074 (5)0.0064 (7)
C100.0239 (7)0.0612 (11)0.0458 (8)−0.0045 (7)0.0026 (6)0.0193 (7)
C110.0405 (8)0.0409 (10)0.0587 (10)−0.0124 (7)−0.0004 (7)0.0099 (7)
C120.0372 (7)0.0305 (8)0.0447 (8)−0.0009 (6)0.0039 (6)−0.0008 (6)
F1—C81.3508 (17)C4—H4A0.9800
F2—C101.3555 (16)C4—H4B0.9800
O1—C11.4071 (15)C4—H4C0.9800
O1—C31.4195 (15)C5—C71.5207 (16)
O2—N41.2531 (14)C5—C61.5220 (16)
O3—N41.2463 (13)C5—H51.0000
N1—C21.3229 (15)C6—H6A0.9800
N1—C41.4656 (16)C6—H6B0.9800
N1—C11.4703 (15)C6—H6C0.9800
N2—C21.3402 (16)C7—C81.3859 (18)
N2—C31.4540 (16)C7—C121.389 (2)
N2—C51.4834 (15)C8—C91.3843 (18)
N3—N41.3219 (14)C9—C101.364 (2)
N3—C21.3804 (16)C9—H90.9500
C1—H1A0.9900C10—C111.373 (3)
C1—H1B0.9900C11—C121.389 (2)
C3—H3A0.9900C11—H110.9500
C3—H3B0.9900C12—H120.9500
C1—O1—C3108.88 (9)H4B—C4—H4C109.5
C2—N1—C4121.56 (10)N2—C5—C7109.21 (9)
C2—N1—C1122.59 (10)N2—C5—C6110.04 (10)
C4—N1—C1115.64 (10)C7—C5—C6114.27 (11)
C2—N2—C3115.97 (10)N2—C5—H5107.7
C2—N2—C5122.63 (10)C7—C5—H5107.7
C3—N2—C5120.64 (10)C6—C5—H5107.7
N4—N3—C2112.64 (10)C5—C6—H6A109.5
O3—N4—O2120.86 (10)C5—C6—H6B109.5
O3—N4—N3117.21 (10)H6A—C6—H6B109.5
O2—N4—N3121.88 (10)C5—C6—H6C109.5
O1—C1—N1110.87 (9)H6A—C6—H6C109.5
O1—C1—H1A109.5H6B—C6—H6C109.5
N1—C1—H1A109.5C8—C7—C12116.37 (12)
O1—C1—H1B109.5C8—C7—C5119.71 (12)
N1—C1—H1B109.5C12—C7—C5123.90 (12)
H1A—C1—H1B108.1F1—C8—C9117.73 (12)
N1—C2—N2118.86 (11)F1—C8—C7118.46 (11)
N1—C2—N3118.27 (11)C9—C8—C7123.80 (14)
N2—C2—N3122.66 (11)C10—C9—C8116.62 (14)
O1—C3—N2108.03 (10)C10—C9—H9121.7
O1—C3—H3A110.1C8—C9—H9121.7
N2—C3—H3A110.1F2—C10—C9117.92 (15)
O1—C3—H3B110.1F2—C10—C11118.73 (15)
N2—C3—H3B110.1C9—C10—C11123.35 (13)
H3A—C3—H3B108.4C10—C11—C12117.93 (15)
N1—C4—H4A109.5C10—C11—H11121.0
N1—C4—H4B109.5C12—C11—H11121.0
H4A—C4—H4B109.5C7—C12—C11121.92 (15)
N1—C4—H4C109.5C7—C12—H12119.0
H4A—C4—H4C109.5C11—C12—H12119.0
C2—N3—N4—O3−172.41 (10)C2—N2—C5—C6−121.23 (12)
C2—N3—N4—O210.03 (16)C3—N2—C5—C669.16 (14)
C3—O1—C1—N1−47.20 (13)N2—C5—C7—C8−81.41 (14)
C2—N1—C1—O17.42 (16)C6—C5—C7—C8154.88 (11)
C4—N1—C1—O1−167.37 (10)N2—C5—C7—C1297.20 (13)
C4—N1—C2—N2−172.76 (10)C6—C5—C7—C12−26.51 (17)
C1—N1—C2—N212.76 (16)C12—C7—C8—F1179.02 (11)
C4—N1—C2—N312.45 (16)C5—C7—C8—F1−2.26 (17)
C1—N1—C2—N3−162.04 (10)C12—C7—C8—C9−0.32 (19)
C3—N2—C2—N18.56 (15)C5—C7—C8—C9178.39 (11)
C5—N2—C2—N1−161.50 (10)F1—C8—C9—C10−179.21 (12)
C3—N2—C2—N3−176.88 (10)C7—C8—C9—C100.1 (2)
C5—N2—C2—N313.05 (16)C8—C9—C10—F2179.50 (12)
N4—N3—C2—N1−116.27 (12)C8—C9—C10—C110.2 (2)
N4—N3—C2—N269.15 (14)F2—C10—C11—C12−179.59 (13)
C1—O1—C3—N267.89 (12)C9—C10—C11—C12−0.2 (2)
C2—N2—C3—O1−48.47 (13)C8—C7—C12—C110.2 (2)
C5—N2—C3—O1121.80 (11)C5—C7—C12—C11−178.43 (13)
C2—N2—C5—C7112.59 (12)C10—C11—C12—C70.0 (2)
C3—N2—C5—C7−57.02 (14)
D—H···AD—HH···AD···AD—H···A
C1—H1A···O3i0.992.503.1908 (16)127
C3—H3A···O2ii0.992.513.4439 (18)156
C4—H4C···O2iii0.982.493.1665 (17)126
C6—H6A···O3iv0.982.393.2046 (18)140
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C1—H1A⋯O3i0.992.503.1908 (16)127
C3—H3A⋯O2ii0.992.513.4439 (18)156
C4—H4C⋯O2iii0.982.493.1665 (17)126
C6—H6A⋯O3iv0.982.393.2046 (18)140

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  3-[(E)-3,7-Dimethyl-octa-2,6-dien-yl]-5-methyl-N-nitro-1,3,5-oxadiazinan-4-imine.

Authors:  Tie-Niu Kang; Li Zhang; Yun Ling; Xin-Ling Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-24
  2 in total
  1 in total

1.  rac-(E)-3-[1-(2-Chloro-phen-yl)eth-yl]-5-methyl-N-nitro-1,3,5-oxadiazinan-4-imine.

Authors:  Cong-Cong Li; Yuan-Yuan Zhong; Liang-Zhong Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-08-28
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.