| Literature DB >> 21588297 |
Yuan-Yuan Zhong1, Cong-Cong Li, Liang-Zhong Xu.
Abstract
The 1,3,5-oxadiazinane ring in the title compound, C(12)H(14)F(2)N(4)O(3), has a conformation inter-mediate between half-chair and screw-boat. The crystal structure is stabilized by weak inter-molecular C-H⋯O hydrogen bonds. Weak π-π inter-actions are indicated by the relatively long centroid-centroid distance of 3.9199 (12) Å and inter-planar distance of 3.803 Å between symmetry-related benzene rings from neighbouring mol-ecules.Entities:
Year: 2010 PMID: 21588297 PMCID: PMC3007461 DOI: 10.1107/S1600536810026425
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C12H14F2N4O3 | |
| Monoclinic, | Cu |
| Hall symbol: -P 2ybc | Cell parameters from 1502 reflections |
| θ = 27.7–72.0° | |
| µ = 1.11 mm−1 | |
| β = 101.25 (3)° | Prism, colorless |
| 0.26 × 0.24 × 0.22 mm | |
| Rigaku Saturn diffractometer | 2567 independent reflections |
| Radiation source: fine-focus sealed tube | 2168 reflections with |
| graphite | |
| Detector resolution: 14.63 pixels mm-1 | θmax = 72.3°, θmin = 3.4° |
| ω scans | |
| Absorption correction: numerical ( | |
| 13266 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2567 reflections | Δρmax = 0.31 e Å−3 |
| 193 parameters | Δρmin = −0.30 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0131 (11) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| F1 | 0.40932 (6) | 0.24125 (13) | 0.33990 (6) | 0.0436 (3) | |
| F2 | 0.67967 (7) | 0.68795 (18) | 0.36250 (8) | 0.0676 (4) | |
| O1 | 0.23598 (6) | 0.67016 (13) | 0.16461 (6) | 0.0279 (2) | |
| O2 | 0.04094 (7) | 0.32758 (14) | 0.35714 (7) | 0.0374 (3) | |
| O3 | 0.09896 (7) | 0.03447 (15) | 0.39933 (6) | 0.0365 (3) | |
| N1 | 0.13558 (7) | 0.38098 (16) | 0.16500 (6) | 0.0230 (2) | |
| N2 | 0.21022 (7) | 0.52761 (15) | 0.29879 (6) | 0.0235 (2) | |
| N3 | 0.16278 (8) | 0.18616 (15) | 0.29436 (7) | 0.0272 (3) | |
| N4 | 0.09994 (7) | 0.18567 (15) | 0.35200 (7) | 0.0246 (3) | |
| C1 | 0.16316 (9) | 0.5470 (2) | 0.11134 (8) | 0.0274 (3) | |
| H1A | 0.1910 | 0.4946 | 0.0598 | 0.033* | |
| H1B | 0.1015 | 0.6254 | 0.0866 | 0.033* | |
| C2 | 0.16748 (8) | 0.36822 (18) | 0.25358 (8) | 0.0220 (3) | |
| C3 | 0.20435 (10) | 0.71093 (19) | 0.24732 (8) | 0.0261 (3) | |
| H3A | 0.1336 | 0.7618 | 0.2352 | 0.031* | |
| H3B | 0.2492 | 0.8126 | 0.2820 | 0.031* | |
| C4 | 0.07765 (10) | 0.2205 (2) | 0.11312 (9) | 0.0302 (3) | |
| H4A | 0.1237 | 0.1110 | 0.1065 | 0.045* | |
| H4B | 0.0455 | 0.2697 | 0.0532 | 0.045* | |
| H4C | 0.0250 | 0.1736 | 0.1450 | 0.045* | |
| C5 | 0.27466 (9) | 0.51446 (19) | 0.39058 (7) | 0.0240 (3) | |
| H5 | 0.2741 | 0.3734 | 0.4108 | 0.029* | |
| C6 | 0.22926 (10) | 0.6404 (2) | 0.45658 (8) | 0.0330 (3) | |
| H6A | 0.2235 | 0.7781 | 0.4355 | 0.050* | |
| H6B | 0.2735 | 0.6344 | 0.5165 | 0.050* | |
| H6C | 0.1615 | 0.5897 | 0.4602 | 0.050* | |
| C7 | 0.38383 (9) | 0.5676 (2) | 0.38557 (8) | 0.0265 (3) | |
| C8 | 0.44655 (10) | 0.4260 (2) | 0.35833 (8) | 0.0299 (3) | |
| C9 | 0.54602 (10) | 0.4619 (3) | 0.34965 (9) | 0.0401 (4) | |
| H9 | 0.5870 | 0.3615 | 0.3307 | 0.048* | |
| C10 | 0.58224 (10) | 0.6488 (3) | 0.36972 (11) | 0.0442 (4) | |
| C11 | 0.52547 (12) | 0.7976 (3) | 0.39754 (12) | 0.0480 (4) | |
| H11 | 0.5533 | 0.9261 | 0.4112 | 0.058* | |
| C12 | 0.42598 (11) | 0.7545 (2) | 0.40513 (10) | 0.0380 (3) | |
| H12 | 0.3856 | 0.8557 | 0.4242 | 0.046* |
| F1 | 0.0385 (5) | 0.0347 (5) | 0.0584 (6) | 0.0058 (4) | 0.0117 (4) | −0.0135 (4) |
| F2 | 0.0272 (5) | 0.0938 (9) | 0.0812 (8) | −0.0096 (5) | 0.0090 (4) | 0.0320 (6) |
| O1 | 0.0302 (5) | 0.0302 (5) | 0.0240 (4) | −0.0087 (4) | 0.0076 (3) | 0.0012 (3) |
| O2 | 0.0327 (5) | 0.0287 (6) | 0.0561 (6) | 0.0059 (4) | 0.0219 (4) | 0.0054 (4) |
| O3 | 0.0432 (6) | 0.0312 (6) | 0.0361 (5) | −0.0011 (4) | 0.0104 (4) | 0.0155 (4) |
| N1 | 0.0241 (5) | 0.0235 (6) | 0.0218 (5) | −0.0033 (4) | 0.0051 (4) | −0.0011 (4) |
| N2 | 0.0298 (5) | 0.0210 (6) | 0.0193 (5) | −0.0006 (4) | 0.0041 (4) | 0.0004 (4) |
| N3 | 0.0332 (6) | 0.0203 (6) | 0.0312 (6) | 0.0007 (4) | 0.0139 (4) | 0.0022 (4) |
| N4 | 0.0255 (5) | 0.0232 (6) | 0.0249 (5) | −0.0001 (4) | 0.0043 (4) | 0.0041 (4) |
| C1 | 0.0324 (6) | 0.0294 (7) | 0.0201 (6) | −0.0057 (5) | 0.0048 (4) | 0.0016 (5) |
| C2 | 0.0220 (5) | 0.0225 (6) | 0.0229 (6) | 0.0016 (4) | 0.0082 (4) | 0.0000 (4) |
| C3 | 0.0327 (6) | 0.0222 (7) | 0.0228 (6) | −0.0016 (5) | 0.0038 (5) | 0.0012 (4) |
| C4 | 0.0280 (6) | 0.0294 (7) | 0.0317 (6) | −0.0035 (5) | 0.0022 (5) | −0.0082 (5) |
| C5 | 0.0274 (6) | 0.0251 (7) | 0.0193 (6) | 0.0029 (5) | 0.0038 (4) | 0.0007 (4) |
| C6 | 0.0339 (7) | 0.0420 (8) | 0.0227 (6) | 0.0089 (6) | 0.0043 (5) | −0.0043 (5) |
| C7 | 0.0283 (6) | 0.0286 (7) | 0.0218 (6) | 0.0020 (5) | 0.0030 (4) | 0.0023 (5) |
| C8 | 0.0297 (6) | 0.0325 (8) | 0.0271 (6) | 0.0030 (5) | 0.0041 (5) | 0.0006 (5) |
| C9 | 0.0291 (7) | 0.0560 (10) | 0.0356 (7) | 0.0096 (7) | 0.0074 (5) | 0.0064 (7) |
| C10 | 0.0239 (7) | 0.0612 (11) | 0.0458 (8) | −0.0045 (7) | 0.0026 (6) | 0.0193 (7) |
| C11 | 0.0405 (8) | 0.0409 (10) | 0.0587 (10) | −0.0124 (7) | −0.0004 (7) | 0.0099 (7) |
| C12 | 0.0372 (7) | 0.0305 (8) | 0.0447 (8) | −0.0009 (6) | 0.0039 (6) | −0.0008 (6) |
| F1—C8 | 1.3508 (17) | C4—H4A | 0.9800 |
| F2—C10 | 1.3555 (16) | C4—H4B | 0.9800 |
| O1—C1 | 1.4071 (15) | C4—H4C | 0.9800 |
| O1—C3 | 1.4195 (15) | C5—C7 | 1.5207 (16) |
| O2—N4 | 1.2531 (14) | C5—C6 | 1.5220 (16) |
| O3—N4 | 1.2463 (13) | C5—H5 | 1.0000 |
| N1—C2 | 1.3229 (15) | C6—H6A | 0.9800 |
| N1—C4 | 1.4656 (16) | C6—H6B | 0.9800 |
| N1—C1 | 1.4703 (15) | C6—H6C | 0.9800 |
| N2—C2 | 1.3402 (16) | C7—C8 | 1.3859 (18) |
| N2—C3 | 1.4540 (16) | C7—C12 | 1.389 (2) |
| N2—C5 | 1.4834 (15) | C8—C9 | 1.3843 (18) |
| N3—N4 | 1.3219 (14) | C9—C10 | 1.364 (2) |
| N3—C2 | 1.3804 (16) | C9—H9 | 0.9500 |
| C1—H1A | 0.9900 | C10—C11 | 1.373 (3) |
| C1—H1B | 0.9900 | C11—C12 | 1.389 (2) |
| C3—H3A | 0.9900 | C11—H11 | 0.9500 |
| C3—H3B | 0.9900 | C12—H12 | 0.9500 |
| C1—O1—C3 | 108.88 (9) | H4B—C4—H4C | 109.5 |
| C2—N1—C4 | 121.56 (10) | N2—C5—C7 | 109.21 (9) |
| C2—N1—C1 | 122.59 (10) | N2—C5—C6 | 110.04 (10) |
| C4—N1—C1 | 115.64 (10) | C7—C5—C6 | 114.27 (11) |
| C2—N2—C3 | 115.97 (10) | N2—C5—H5 | 107.7 |
| C2—N2—C5 | 122.63 (10) | C7—C5—H5 | 107.7 |
| C3—N2—C5 | 120.64 (10) | C6—C5—H5 | 107.7 |
| N4—N3—C2 | 112.64 (10) | C5—C6—H6A | 109.5 |
| O3—N4—O2 | 120.86 (10) | C5—C6—H6B | 109.5 |
| O3—N4—N3 | 117.21 (10) | H6A—C6—H6B | 109.5 |
| O2—N4—N3 | 121.88 (10) | C5—C6—H6C | 109.5 |
| O1—C1—N1 | 110.87 (9) | H6A—C6—H6C | 109.5 |
| O1—C1—H1A | 109.5 | H6B—C6—H6C | 109.5 |
| N1—C1—H1A | 109.5 | C8—C7—C12 | 116.37 (12) |
| O1—C1—H1B | 109.5 | C8—C7—C5 | 119.71 (12) |
| N1—C1—H1B | 109.5 | C12—C7—C5 | 123.90 (12) |
| H1A—C1—H1B | 108.1 | F1—C8—C9 | 117.73 (12) |
| N1—C2—N2 | 118.86 (11) | F1—C8—C7 | 118.46 (11) |
| N1—C2—N3 | 118.27 (11) | C9—C8—C7 | 123.80 (14) |
| N2—C2—N3 | 122.66 (11) | C10—C9—C8 | 116.62 (14) |
| O1—C3—N2 | 108.03 (10) | C10—C9—H9 | 121.7 |
| O1—C3—H3A | 110.1 | C8—C9—H9 | 121.7 |
| N2—C3—H3A | 110.1 | F2—C10—C9 | 117.92 (15) |
| O1—C3—H3B | 110.1 | F2—C10—C11 | 118.73 (15) |
| N2—C3—H3B | 110.1 | C9—C10—C11 | 123.35 (13) |
| H3A—C3—H3B | 108.4 | C10—C11—C12 | 117.93 (15) |
| N1—C4—H4A | 109.5 | C10—C11—H11 | 121.0 |
| N1—C4—H4B | 109.5 | C12—C11—H11 | 121.0 |
| H4A—C4—H4B | 109.5 | C7—C12—C11 | 121.92 (15) |
| N1—C4—H4C | 109.5 | C7—C12—H12 | 119.0 |
| H4A—C4—H4C | 109.5 | C11—C12—H12 | 119.0 |
| C2—N3—N4—O3 | −172.41 (10) | C2—N2—C5—C6 | −121.23 (12) |
| C2—N3—N4—O2 | 10.03 (16) | C3—N2—C5—C6 | 69.16 (14) |
| C3—O1—C1—N1 | −47.20 (13) | N2—C5—C7—C8 | −81.41 (14) |
| C2—N1—C1—O1 | 7.42 (16) | C6—C5—C7—C8 | 154.88 (11) |
| C4—N1—C1—O1 | −167.37 (10) | N2—C5—C7—C12 | 97.20 (13) |
| C4—N1—C2—N2 | −172.76 (10) | C6—C5—C7—C12 | −26.51 (17) |
| C1—N1—C2—N2 | 12.76 (16) | C12—C7—C8—F1 | 179.02 (11) |
| C4—N1—C2—N3 | 12.45 (16) | C5—C7—C8—F1 | −2.26 (17) |
| C1—N1—C2—N3 | −162.04 (10) | C12—C7—C8—C9 | −0.32 (19) |
| C3—N2—C2—N1 | 8.56 (15) | C5—C7—C8—C9 | 178.39 (11) |
| C5—N2—C2—N1 | −161.50 (10) | F1—C8—C9—C10 | −179.21 (12) |
| C3—N2—C2—N3 | −176.88 (10) | C7—C8—C9—C10 | 0.1 (2) |
| C5—N2—C2—N3 | 13.05 (16) | C8—C9—C10—F2 | 179.50 (12) |
| N4—N3—C2—N1 | −116.27 (12) | C8—C9—C10—C11 | 0.2 (2) |
| N4—N3—C2—N2 | 69.15 (14) | F2—C10—C11—C12 | −179.59 (13) |
| C1—O1—C3—N2 | 67.89 (12) | C9—C10—C11—C12 | −0.2 (2) |
| C2—N2—C3—O1 | −48.47 (13) | C8—C7—C12—C11 | 0.2 (2) |
| C5—N2—C3—O1 | 121.80 (11) | C5—C7—C12—C11 | −178.43 (13) |
| C2—N2—C5—C7 | 112.59 (12) | C10—C11—C12—C7 | 0.0 (2) |
| C3—N2—C5—C7 | −57.02 (14) |
| H··· | ||||
| C1—H1A···O3i | 0.99 | 2.50 | 3.1908 (16) | 127 |
| C3—H3A···O2ii | 0.99 | 2.51 | 3.4439 (18) | 156 |
| C4—H4C···O2iii | 0.98 | 2.49 | 3.1665 (17) | 126 |
| C6—H6A···O3iv | 0.98 | 2.39 | 3.2046 (18) | 140 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| C1—H1 | 0.99 | 2.50 | 3.1908 (16) | 127 |
| C3—H3 | 0.99 | 2.51 | 3.4439 (18) | 156 |
| C4—H4 | 0.98 | 2.49 | 3.1665 (17) | 126 |
| C6—H6 | 0.98 | 2.39 | 3.2046 (18) | 140 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .