| Literature DB >> 21588772 |
Zhongzhen Tian, Gaolei Wang, Haijun Dong.
Abstract
In the title compound, C(11)H(19)N(3)O(5), the six-membered ring displays a half-chair conformation and the imidazolidine ring is essentially planar (r.m.s. deviation = 0.088 Å). An inter-molecular hydrogen bond between the hy-droxy O atom and a nitro O atom stabilizes the crystal packing.Entities:
Year: 2010 PMID: 21588772 PMCID: PMC3007961 DOI: 10.1107/S1600536810033660
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C11H19N3O5 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2ybc | Cell parameters from 15115 reflections |
| θ = 3.0–28.9° | |
| µ = 0.11 mm−1 | |
| β = 113.124 (6)° | Prism, colourless |
| 0.46 × 0.20 × 0.16 mm | |
| Bruker APEXII CCD area-detector diffractometer | 2723 independent reflections |
| Radiation source: fine-focus sealed tube | 2100 reflections with |
| graphite | |
| Detector resolution: 16.0355 pixels mm-1 | θmax = 26.4°, θmin = 3.0° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 37886 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2723 reflections | (Δ/σ)max = 0.005 |
| 175 parameters | Δρmax = 0.18 e Å−3 |
| 0 restraints | Δρmin = −0.19 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.29875 (12) | 0.55756 (14) | 0.22689 (9) | 0.0425 (3) | |
| O1 | 0.63771 (13) | 0.70130 (14) | 0.20749 (9) | 0.0628 (4) | |
| H1 | 0.6117 | 0.7331 | 0.1491 | 0.094* | |
| N2 | 0.47152 (13) | 0.53178 (15) | 0.19064 (9) | 0.0445 (3) | |
| C5 | 0.42919 (14) | 0.56183 (15) | 0.26436 (10) | 0.0371 (3) | |
| O4 | 0.38448 (13) | 0.73086 (14) | 0.41241 (9) | 0.0600 (3) | |
| N3 | 0.49381 (14) | 0.67236 (15) | 0.43224 (9) | 0.0480 (3) | |
| O5 | 0.58619 (14) | 0.69576 (16) | 0.51820 (8) | 0.0707 (4) | |
| O2 | 0.02213 (12) | 0.59831 (16) | 0.16524 (10) | 0.0721 (4) | |
| C8 | 0.22221 (16) | 0.51751 (18) | 0.28522 (12) | 0.0475 (4) | |
| H8B | 0.2773 | 0.5183 | 0.3573 | 0.057* | |
| H8A | 0.1892 | 0.4184 | 0.2671 | 0.057* | |
| C1 | 0.52149 (15) | 0.59073 (16) | 0.36427 (10) | 0.0406 (4) | |
| C4 | 0.60599 (16) | 0.55202 (18) | 0.20530 (12) | 0.0487 (4) | |
| H4 | 0.6219 | 0.5029 | 0.1502 | 0.058* | |
| C6 | 0.36474 (16) | 0.5264 (2) | 0.09100 (11) | 0.0533 (4) | |
| H6A | 0.3731 | 0.4436 | 0.0511 | 0.064* | |
| H6B | 0.3589 | 0.6166 | 0.0531 | 0.064* | |
| C2 | 0.66126 (16) | 0.5530 (2) | 0.39249 (12) | 0.0550 (4) | |
| H2A | 0.6892 | 0.4865 | 0.4503 | 0.066* | |
| H2B | 0.7126 | 0.6420 | 0.4133 | 0.066* | |
| O3 | 0.05036 (15) | 0.58840 (17) | 0.33329 (12) | 0.0822 (5) | |
| C9 | 0.10981 (17) | 0.6218 (2) | 0.26575 (14) | 0.0533 (4) | |
| H9 | 0.1401 | 0.7240 | 0.2748 | 0.064* | |
| C7 | 0.25036 (17) | 0.5085 (2) | 0.11957 (12) | 0.0583 (5) | |
| H7B | 0.1784 | 0.5690 | 0.0767 | 0.070* | |
| H7A | 0.2226 | 0.4066 | 0.1133 | 0.070* | |
| C3 | 0.68676 (18) | 0.4813 (2) | 0.30524 (14) | 0.0593 (5) | |
| H3B | 0.7777 | 0.4911 | 0.3176 | 0.071* | |
| H3A | 0.6665 | 0.3772 | 0.3024 | 0.071* | |
| C11 | −0.0810 (2) | 0.7013 (3) | 0.12986 (19) | 0.0959 (8) | |
| H11A | −0.1268 | 0.6905 | 0.0575 | 0.144* | |
| H11C | −0.0469 | 0.7992 | 0.1449 | 0.144* | |
| H11B | −0.1391 | 0.6837 | 0.1632 | 0.144* | |
| C10 | 0.0604 (3) | 0.6935 (3) | 0.40618 (19) | 0.1038 (9) | |
| H10C | 0.0242 | 0.7846 | 0.3732 | 0.156* | |
| H10B | 0.1499 | 0.7079 | 0.4495 | 0.156* | |
| H10A | 0.0140 | 0.6611 | 0.4464 | 0.156* |
| N1 | 0.0463 (7) | 0.0455 (7) | 0.0367 (7) | −0.0014 (6) | 0.0174 (5) | 0.0008 (5) |
| O1 | 0.0799 (9) | 0.0637 (8) | 0.0487 (7) | −0.0237 (7) | 0.0295 (7) | −0.0008 (6) |
| N2 | 0.0509 (7) | 0.0518 (8) | 0.0352 (6) | −0.0067 (6) | 0.0216 (6) | −0.0049 (6) |
| C5 | 0.0503 (8) | 0.0298 (7) | 0.0356 (7) | 0.0001 (6) | 0.0216 (6) | 0.0037 (6) |
| O4 | 0.0738 (9) | 0.0590 (8) | 0.0535 (7) | 0.0098 (6) | 0.0316 (6) | −0.0076 (6) |
| N3 | 0.0638 (9) | 0.0476 (8) | 0.0355 (7) | −0.0002 (7) | 0.0224 (6) | 0.0012 (6) |
| O5 | 0.0843 (9) | 0.0892 (10) | 0.0313 (6) | −0.0007 (8) | 0.0149 (6) | −0.0112 (6) |
| O2 | 0.0559 (7) | 0.0772 (9) | 0.0729 (9) | 0.0166 (6) | 0.0144 (6) | −0.0202 (7) |
| C8 | 0.0528 (9) | 0.0441 (9) | 0.0526 (9) | −0.0010 (7) | 0.0284 (7) | 0.0035 (7) |
| C1 | 0.0515 (9) | 0.0403 (8) | 0.0330 (7) | 0.0005 (6) | 0.0200 (6) | 0.0033 (6) |
| C4 | 0.0579 (10) | 0.0517 (10) | 0.0464 (9) | −0.0060 (8) | 0.0312 (8) | −0.0083 (7) |
| C6 | 0.0636 (11) | 0.0617 (11) | 0.0350 (8) | −0.0065 (8) | 0.0197 (7) | −0.0068 (7) |
| C2 | 0.0541 (10) | 0.0666 (11) | 0.0409 (8) | 0.0061 (8) | 0.0150 (7) | 0.0070 (8) |
| O3 | 0.0895 (10) | 0.0801 (10) | 0.1065 (12) | −0.0016 (8) | 0.0702 (10) | −0.0059 (9) |
| C9 | 0.0553 (10) | 0.0478 (10) | 0.0646 (11) | −0.0009 (8) | 0.0319 (8) | −0.0056 (8) |
| C7 | 0.0587 (10) | 0.0735 (12) | 0.0402 (8) | −0.0090 (9) | 0.0166 (8) | −0.0065 (8) |
| C3 | 0.0579 (10) | 0.0598 (11) | 0.0643 (11) | 0.0100 (8) | 0.0284 (9) | 0.0031 (9) |
| C11 | 0.0779 (15) | 0.114 (2) | 0.0836 (16) | 0.0394 (14) | 0.0185 (12) | −0.0119 (14) |
| C10 | 0.132 (2) | 0.120 (2) | 0.0766 (16) | 0.0389 (18) | 0.0594 (16) | −0.0029 (14) |
| N1—C5 | 1.3488 (19) | C6—H6A | 0.9700 |
| N1—C8 | 1.4579 (19) | C6—H6B | 0.9700 |
| N1—C7 | 1.4777 (19) | C6—C7 | 1.502 (2) |
| O1—H1 | 0.8200 | C2—H2A | 0.9700 |
| O1—C4 | 1.400 (2) | C2—H2B | 0.9700 |
| N2—C5 | 1.3412 (19) | C2—C3 | 1.528 (2) |
| N2—C4 | 1.453 (2) | O3—C9 | 1.404 (2) |
| N2—C6 | 1.4566 (19) | O3—C10 | 1.384 (3) |
| C5—C1 | 1.419 (2) | C9—H9 | 0.9800 |
| O4—N3 | 1.2643 (18) | C7—H7B | 0.9700 |
| N3—O5 | 1.2751 (17) | C7—H7A | 0.9700 |
| N3—C1 | 1.350 (2) | C3—H3B | 0.9700 |
| O2—C9 | 1.400 (2) | C3—H3A | 0.9700 |
| O2—C11 | 1.419 (2) | C11—H11A | 0.9600 |
| C8—H8B | 0.9700 | C11—H11C | 0.9600 |
| C8—H8A | 0.9700 | C11—H11B | 0.9600 |
| C8—C9 | 1.515 (2) | C10—H10C | 0.9600 |
| C1—C2 | 1.500 (2) | C10—H10B | 0.9600 |
| C4—H4 | 0.9800 | C10—H10A | 0.9600 |
| C4—C3 | 1.501 (2) | ||
| N1—C5—C1 | 130.90 (13) | C1—C2—H2A | 109.0 |
| N1—C8—H8B | 109.2 | C1—C2—H2B | 109.0 |
| N1—C8—H8A | 109.2 | C1—C2—C3 | 112.98 (14) |
| N1—C8—C9 | 112.03 (13) | C4—O1—H1 | 109.5 |
| N1—C7—C6 | 104.03 (13) | C4—N2—C6 | 123.77 (12) |
| N1—C7—H7B | 111.0 | C4—C3—C2 | 110.73 (14) |
| N1—C7—H7A | 111.0 | C4—C3—H3B | 109.5 |
| O1—C4—N2 | 111.53 (14) | C4—C3—H3A | 109.5 |
| O1—C4—H4 | 109.5 | C6—C7—H7B | 111.0 |
| O1—C4—C3 | 109.90 (14) | C6—C7—H7A | 111.0 |
| N2—C5—N1 | 110.37 (13) | H6A—C6—H6B | 109.3 |
| N2—C5—C1 | 118.73 (14) | C2—C3—H3B | 109.5 |
| N2—C4—H4 | 109.5 | C2—C3—H3A | 109.5 |
| N2—C4—C3 | 106.79 (13) | H2A—C2—H2B | 107.8 |
| N2—C6—H6A | 111.4 | O3—C9—C8 | 109.02 (15) |
| N2—C6—H6B | 111.4 | O3—C9—H9 | 110.4 |
| N2—C6—C7 | 101.74 (12) | O3—C10—H10C | 109.5 |
| C5—N1—C8 | 125.00 (12) | O3—C10—H10B | 109.5 |
| C5—N1—C7 | 108.64 (13) | O3—C10—H10A | 109.5 |
| C5—N2—C4 | 122.00 (13) | C9—O2—C11 | 114.29 (15) |
| C5—N2—C6 | 111.22 (13) | C9—C8—H8B | 109.2 |
| C5—C1—C2 | 120.14 (13) | C9—C8—H8A | 109.2 |
| O4—N3—O5 | 119.82 (13) | C7—C6—H6A | 111.4 |
| O4—N3—C1 | 123.22 (13) | C7—C6—H6B | 111.4 |
| N3—C1—C5 | 122.62 (14) | H7B—C7—H7A | 109.0 |
| N3—C1—C2 | 116.43 (14) | C3—C4—H4 | 109.5 |
| O5—N3—C1 | 116.87 (14) | C3—C2—H2A | 109.0 |
| O2—C9—C8 | 107.03 (13) | C3—C2—H2B | 109.0 |
| O2—C9—O3 | 109.65 (15) | H3B—C3—H3A | 108.1 |
| O2—C9—H9 | 110.4 | H11A—C11—H11C | 109.5 |
| O2—C11—H11A | 109.5 | H11A—C11—H11B | 109.5 |
| O2—C11—H11C | 109.5 | H11C—C11—H11B | 109.5 |
| O2—C11—H11B | 109.5 | C10—O3—C9 | 116.47 (18) |
| C8—N1—C7 | 117.14 (13) | H10C—C10—H10B | 109.5 |
| C8—C9—H9 | 110.4 | H10C—C10—H10A | 109.5 |
| H8B—C8—H8A | 107.9 | H10B—C10—H10A | 109.5 |
| N1—C5—C1—N3 | −25.8 (2) | O5—N3—C1—C2 | −7.5 (2) |
| N1—C5—C1—C2 | 164.90 (15) | C8—N1—C5—N2 | 150.28 (14) |
| N1—C8—C9—O2 | 68.81 (18) | C8—N1—C5—C1 | −29.3 (2) |
| N1—C8—C9—O3 | −172.66 (14) | C8—N1—C7—C6 | −164.17 (14) |
| O1—C4—C3—C2 | 61.14 (19) | C1—C2—C3—C4 | 38.9 (2) |
| N2—C5—C1—N3 | 154.74 (15) | C4—N2—C5—N1 | 169.82 (14) |
| N2—C5—C1—C2 | −14.6 (2) | C4—N2—C5—C1 | −10.6 (2) |
| N2—C4—C3—C2 | −59.99 (19) | C4—N2—C6—C7 | −178.50 (15) |
| N2—C6—C7—N1 | 19.23 (18) | C6—N2—C5—N1 | 8.77 (17) |
| C5—N1—C8—C9 | 135.02 (15) | C6—N2—C5—C1 | −171.63 (13) |
| C5—N1—C7—C6 | −15.63 (19) | C6—N2—C4—O1 | 86.66 (18) |
| C5—N2—C4—O1 | −71.99 (18) | C6—N2—C4—C3 | −153.26 (15) |
| C5—N2—C4—C3 | 48.10 (19) | C7—N1—C5—N2 | 4.82 (17) |
| C5—N2—C6—C7 | −17.84 (18) | C7—N1—C5—C1 | −174.72 (15) |
| C5—C1—C2—C3 | −1.2 (2) | C7—N1—C8—C9 | −82.11 (18) |
| O4—N3—C1—C5 | −0.8 (2) | C11—O2—C9—C8 | −171.90 (18) |
| O4—N3—C1—C2 | 168.94 (14) | C11—O2—C9—O3 | 70.0 (2) |
| N3—C1—C2—C3 | −171.20 (15) | C10—O3—C9—O2 | −129.9 (2) |
| O5—N3—C1—C5 | −177.19 (14) | C10—O3—C9—C8 | 113.2 (2) |
| H··· | ||||
| O1—H1···O5i | 0.82 | 1.89 | 2.6966 (16) | 169. |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1⋯O5i | 0.82 | 1.89 | 2.6966 (16) | 169 |
Symmetry code: (i) .