Literature DB >> 21588772

1-(2,2-Dimeth-oxy-eth-yl)-8-nitro-1,2,3,5,6,7-hexa-hydro-imidazo[1,2-a]pyridin-5-ol.

Zhongzhen Tian, Gaolei Wang, Haijun Dong.   

Abstract

In the title compound, C(11)H(19)N(3)O(5), the six-membered ring displays a half-chair conformation and the imidazolidine ring is essentially planar (r.m.s. deviation = 0.088 Å). An inter-molecular hydrogen bond between the hy-droxy O atom and a nitro O atom stabilizes the crystal packing.

Entities:  

Year:  2010        PMID: 21588772      PMCID: PMC3007961          DOI: 10.1107/S1600536810033660

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Tian et al. (2010 ▶); Li et al. (2010 ▶). For background to neonicotinoid insecticides, see: Mori et al. (2001 ▶); Ohno et al. (2009 ▶); Jeschke et al. (2008 ▶); Tian et al. (2007 ▶).

Experimental

Crystal data

C11H19N3O5 M = 273.29 Monoclinic, a = 11.2337 (6) Å b = 9.0903 (3) Å c = 14.2618 (7) Å β = 113.124 (6)° V = 1339.36 (11) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.46 × 0.20 × 0.16 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.929, T max = 1.0 37886 measured reflections 2723 independent reflections 2100 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.120 S = 1.06 2723 reflections 175 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SIR97 (Altomare et al., 1999 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP (Sheldrick, 2008 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810033660/bt5332sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810033660/bt5332Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H19N3O5F(000) = 584
Mr = 273.29Dx = 1.355 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.7107 Å
Hall symbol: -P 2ybcCell parameters from 15115 reflections
a = 11.2337 (6) Åθ = 3.0–28.9°
b = 9.0903 (3) ŵ = 0.11 mm1
c = 14.2618 (7) ÅT = 293 K
β = 113.124 (6)°Prism, colourless
V = 1339.36 (11) Å30.46 × 0.20 × 0.16 mm
Z = 4
Bruker APEXII CCD area-detector diffractometer2723 independent reflections
Radiation source: fine-focus sealed tube2100 reflections with I > 2σ(I)
graphiteRint = 0.033
Detector resolution: 16.0355 pixels mm-1θmax = 26.4°, θmin = 3.0°
ω scansh = −14→14
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −11→11
Tmin = 0.929, Tmax = 1.0l = −17→17
37886 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.120H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0615P)2 + 0.2341P] where P = (Fo2 + 2Fc2)/3
2723 reflections(Δ/σ)max = 0.005
175 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.19 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.29875 (12)0.55756 (14)0.22689 (9)0.0425 (3)
O10.63771 (13)0.70130 (14)0.20749 (9)0.0628 (4)
H10.61170.73310.14910.094*
N20.47152 (13)0.53178 (15)0.19064 (9)0.0445 (3)
C50.42919 (14)0.56183 (15)0.26436 (10)0.0371 (3)
O40.38448 (13)0.73086 (14)0.41241 (9)0.0600 (3)
N30.49381 (14)0.67236 (15)0.43224 (9)0.0480 (3)
O50.58619 (14)0.69576 (16)0.51820 (8)0.0707 (4)
O20.02213 (12)0.59831 (16)0.16524 (10)0.0721 (4)
C80.22221 (16)0.51751 (18)0.28522 (12)0.0475 (4)
H8B0.27730.51830.35730.057*
H8A0.18920.41840.26710.057*
C10.52149 (15)0.59073 (16)0.36427 (10)0.0406 (4)
C40.60599 (16)0.55202 (18)0.20530 (12)0.0487 (4)
H40.62190.50290.15020.058*
C60.36474 (16)0.5264 (2)0.09100 (11)0.0533 (4)
H6A0.37310.44360.05110.064*
H6B0.35890.61660.05310.064*
C20.66126 (16)0.5530 (2)0.39249 (12)0.0550 (4)
H2A0.68920.48650.45030.066*
H2B0.71260.64200.41330.066*
O30.05036 (15)0.58840 (17)0.33329 (12)0.0822 (5)
C90.10981 (17)0.6218 (2)0.26575 (14)0.0533 (4)
H90.14010.72400.27480.064*
C70.25036 (17)0.5085 (2)0.11957 (12)0.0583 (5)
H7B0.17840.56900.07670.070*
H7A0.22260.40660.11330.070*
C30.68676 (18)0.4813 (2)0.30524 (14)0.0593 (5)
H3B0.77770.49110.31760.071*
H3A0.66650.37720.30240.071*
C11−0.0810 (2)0.7013 (3)0.12986 (19)0.0959 (8)
H11A−0.12680.69050.05750.144*
H11C−0.04690.79920.14490.144*
H11B−0.13910.68370.16320.144*
C100.0604 (3)0.6935 (3)0.40618 (19)0.1038 (9)
H10C0.02420.78460.37320.156*
H10B0.14990.70790.44950.156*
H10A0.01400.66110.44640.156*
U11U22U33U12U13U23
N10.0463 (7)0.0455 (7)0.0367 (7)−0.0014 (6)0.0174 (5)0.0008 (5)
O10.0799 (9)0.0637 (8)0.0487 (7)−0.0237 (7)0.0295 (7)−0.0008 (6)
N20.0509 (7)0.0518 (8)0.0352 (6)−0.0067 (6)0.0216 (6)−0.0049 (6)
C50.0503 (8)0.0298 (7)0.0356 (7)0.0001 (6)0.0216 (6)0.0037 (6)
O40.0738 (9)0.0590 (8)0.0535 (7)0.0098 (6)0.0316 (6)−0.0076 (6)
N30.0638 (9)0.0476 (8)0.0355 (7)−0.0002 (7)0.0224 (6)0.0012 (6)
O50.0843 (9)0.0892 (10)0.0313 (6)−0.0007 (8)0.0149 (6)−0.0112 (6)
O20.0559 (7)0.0772 (9)0.0729 (9)0.0166 (6)0.0144 (6)−0.0202 (7)
C80.0528 (9)0.0441 (9)0.0526 (9)−0.0010 (7)0.0284 (7)0.0035 (7)
C10.0515 (9)0.0403 (8)0.0330 (7)0.0005 (6)0.0200 (6)0.0033 (6)
C40.0579 (10)0.0517 (10)0.0464 (9)−0.0060 (8)0.0312 (8)−0.0083 (7)
C60.0636 (11)0.0617 (11)0.0350 (8)−0.0065 (8)0.0197 (7)−0.0068 (7)
C20.0541 (10)0.0666 (11)0.0409 (8)0.0061 (8)0.0150 (7)0.0070 (8)
O30.0895 (10)0.0801 (10)0.1065 (12)−0.0016 (8)0.0702 (10)−0.0059 (9)
C90.0553 (10)0.0478 (10)0.0646 (11)−0.0009 (8)0.0319 (8)−0.0056 (8)
C70.0587 (10)0.0735 (12)0.0402 (8)−0.0090 (9)0.0166 (8)−0.0065 (8)
C30.0579 (10)0.0598 (11)0.0643 (11)0.0100 (8)0.0284 (9)0.0031 (9)
C110.0779 (15)0.114 (2)0.0836 (16)0.0394 (14)0.0185 (12)−0.0119 (14)
C100.132 (2)0.120 (2)0.0766 (16)0.0389 (18)0.0594 (16)−0.0029 (14)
N1—C51.3488 (19)C6—H6A0.9700
N1—C81.4579 (19)C6—H6B0.9700
N1—C71.4777 (19)C6—C71.502 (2)
O1—H10.8200C2—H2A0.9700
O1—C41.400 (2)C2—H2B0.9700
N2—C51.3412 (19)C2—C31.528 (2)
N2—C41.453 (2)O3—C91.404 (2)
N2—C61.4566 (19)O3—C101.384 (3)
C5—C11.419 (2)C9—H90.9800
O4—N31.2643 (18)C7—H7B0.9700
N3—O51.2751 (17)C7—H7A0.9700
N3—C11.350 (2)C3—H3B0.9700
O2—C91.400 (2)C3—H3A0.9700
O2—C111.419 (2)C11—H11A0.9600
C8—H8B0.9700C11—H11C0.9600
C8—H8A0.9700C11—H11B0.9600
C8—C91.515 (2)C10—H10C0.9600
C1—C21.500 (2)C10—H10B0.9600
C4—H40.9800C10—H10A0.9600
C4—C31.501 (2)
N1—C5—C1130.90 (13)C1—C2—H2A109.0
N1—C8—H8B109.2C1—C2—H2B109.0
N1—C8—H8A109.2C1—C2—C3112.98 (14)
N1—C8—C9112.03 (13)C4—O1—H1109.5
N1—C7—C6104.03 (13)C4—N2—C6123.77 (12)
N1—C7—H7B111.0C4—C3—C2110.73 (14)
N1—C7—H7A111.0C4—C3—H3B109.5
O1—C4—N2111.53 (14)C4—C3—H3A109.5
O1—C4—H4109.5C6—C7—H7B111.0
O1—C4—C3109.90 (14)C6—C7—H7A111.0
N2—C5—N1110.37 (13)H6A—C6—H6B109.3
N2—C5—C1118.73 (14)C2—C3—H3B109.5
N2—C4—H4109.5C2—C3—H3A109.5
N2—C4—C3106.79 (13)H2A—C2—H2B107.8
N2—C6—H6A111.4O3—C9—C8109.02 (15)
N2—C6—H6B111.4O3—C9—H9110.4
N2—C6—C7101.74 (12)O3—C10—H10C109.5
C5—N1—C8125.00 (12)O3—C10—H10B109.5
C5—N1—C7108.64 (13)O3—C10—H10A109.5
C5—N2—C4122.00 (13)C9—O2—C11114.29 (15)
C5—N2—C6111.22 (13)C9—C8—H8B109.2
C5—C1—C2120.14 (13)C9—C8—H8A109.2
O4—N3—O5119.82 (13)C7—C6—H6A111.4
O4—N3—C1123.22 (13)C7—C6—H6B111.4
N3—C1—C5122.62 (14)H7B—C7—H7A109.0
N3—C1—C2116.43 (14)C3—C4—H4109.5
O5—N3—C1116.87 (14)C3—C2—H2A109.0
O2—C9—C8107.03 (13)C3—C2—H2B109.0
O2—C9—O3109.65 (15)H3B—C3—H3A108.1
O2—C9—H9110.4H11A—C11—H11C109.5
O2—C11—H11A109.5H11A—C11—H11B109.5
O2—C11—H11C109.5H11C—C11—H11B109.5
O2—C11—H11B109.5C10—O3—C9116.47 (18)
C8—N1—C7117.14 (13)H10C—C10—H10B109.5
C8—C9—H9110.4H10C—C10—H10A109.5
H8B—C8—H8A107.9H10B—C10—H10A109.5
N1—C5—C1—N3−25.8 (2)O5—N3—C1—C2−7.5 (2)
N1—C5—C1—C2164.90 (15)C8—N1—C5—N2150.28 (14)
N1—C8—C9—O268.81 (18)C8—N1—C5—C1−29.3 (2)
N1—C8—C9—O3−172.66 (14)C8—N1—C7—C6−164.17 (14)
O1—C4—C3—C261.14 (19)C1—C2—C3—C438.9 (2)
N2—C5—C1—N3154.74 (15)C4—N2—C5—N1169.82 (14)
N2—C5—C1—C2−14.6 (2)C4—N2—C5—C1−10.6 (2)
N2—C4—C3—C2−59.99 (19)C4—N2—C6—C7−178.50 (15)
N2—C6—C7—N119.23 (18)C6—N2—C5—N18.77 (17)
C5—N1—C8—C9135.02 (15)C6—N2—C5—C1−171.63 (13)
C5—N1—C7—C6−15.63 (19)C6—N2—C4—O186.66 (18)
C5—N2—C4—O1−71.99 (18)C6—N2—C4—C3−153.26 (15)
C5—N2—C4—C348.10 (19)C7—N1—C5—N24.82 (17)
C5—N2—C6—C7−17.84 (18)C7—N1—C5—C1−174.72 (15)
C5—C1—C2—C3−1.2 (2)C7—N1—C8—C9−82.11 (18)
O4—N3—C1—C5−0.8 (2)C11—O2—C9—C8−171.90 (18)
O4—N3—C1—C2168.94 (14)C11—O2—C9—O370.0 (2)
N3—C1—C2—C3−171.20 (15)C10—O3—C9—O2−129.9 (2)
O5—N3—C1—C5−177.19 (14)C10—O3—C9—C8113.2 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1···O5i0.821.892.6966 (16)169.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O5i0.821.892.6966 (16)169

Symmetry code: (i) .

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Authors:  George M Sheldrick
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6.  (E)-1-(2,2-Dimeth-oxy-eth-yl)-2-(nitro-methyl-idene)imidazolidine.

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