Literature DB >> 21588689

Methyl (Z)-3-({5-[(E)-(tert-butyl-amino)-methyl-idene]-4-oxo-4,5-dihydro-1,3-thia-zol-2-yl}sulfan-yl)prop-2-enoate.

Robabeh Baharfar1, Nasim Porahmad, S Mohammad Vahdat.   

Abstract

In the title compound, C(12)H(16)N(2)O(3)S(2), the S-vinyl, and tert-butyl-enamine fragments make dihedral angles of 14.19 (2) and 0.85 (2)°, respectively, with the thia-zole ring. In the crystal, mol-ecules are linked into chains with graph-set motifs C(5) along [100] by C-H⋯O inter-actions. The mol-ecular conformation is stabilized by an intra-molecular N-H⋯O hydrogen bond.

Entities:  

Year:  2010        PMID: 21588689      PMCID: PMC3007924          DOI: 10.1107/S1600536810030849

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The thia­zole ring system can be found in natural compounds such as thia­mine (Baia, et al., 2008 ▶) and scleritodermin A (Wu & Yang, 2007 ▶). Thia­zole derivatives exhibit varied pharmaceutical properties including anti­cancer (Lesyk et al., 2006 ▶, 2007 ▶), anti­convulsant (Siddiqui & Ahsan, 2010 ▶), anti­psychotic (Satoh et al., 2009 ▶), anti­bacterial and anti­fungal (Abdel-Wahab et al., 2009 ▶; Vijaya Raj et al., 2007 ▶), anti­tubercular (Shiradkar, Murahari et al., 2007 ▶), anti­microbial (Shiradkar, Kumar et al., 2007 ▶), analgesic and anti-inflammatory (Koz’minykh et al., 2004 ▶). For synthetic methods for thiazoles, see: Andrushko et al. (2001 ▶); Bourahla et al. (2007 ▶); Fakhari et al. (2008 ▶); Potikha et al. (2008 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C12H16N2O3S2 M = 300.39 Monoclinic, a = 6.011 (2) Å b = 19.333 (7) Å c = 12.870 (5) Å β = 96.502 (8)° V = 1485.9 (10) Å3 Z = 4 Mo Kα radiation μ = 0.36 mm−1 T = 120 K 0.20 × 0.10 × 0.10 mm

Data collection

Bruker SMART 1000 CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1998 ▶) T min = 0.951, T max = 0.965 15867 measured reflections 3939 independent reflections 3125 reflections with I > 2σ(I) R int = 0.052

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.108 S = 1.00 3939 reflections 177 parameters H-atom parameters constrained Δρmax = 0.66 e Å−3 Δρmin = −0.28 e Å−3 Data collection: SMART (Bruker, 1998 ▶); cell refinement: SAINT-Plus (Bruker, 1998 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810030849/bx2284sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030849/bx2284Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H16N2O3S2F(000) = 632
Mr = 300.39Dx = 1.343 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1769 reflections
a = 6.011 (2) Åθ = 2–25°
b = 19.333 (7) ŵ = 0.36 mm1
c = 12.870 (5) ÅT = 120 K
β = 96.502 (8)°Prism, orange
V = 1485.9 (10) Å30.20 × 0.10 × 0.10 mm
Z = 4
Bruker SMART 1000 CCD area-detector diffractometer3939 independent reflections
Radiation source: fine-focus sealed tube3125 reflections with I > 2σ(I)
graphiteRint = 0.052
phi and ω scansθmax = 29.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1998)h = −8→8
Tmin = 0.951, Tmax = 0.965k = −26→26
15867 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.108H-atom parameters constrained
S = 1.00w = 1/[σ2(Fo2) + (0.010P)2 + 1.980P] where P = (Fo2 + 2Fc2)/3
3939 reflections(Δ/σ)max = 0.001
177 parametersΔρmax = 0.66 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.50629 (8)0.53451 (3)0.63467 (4)0.03196 (13)
S20.20485 (8)0.62005 (3)0.49185 (4)0.03050 (13)
O10.0477 (2)0.46226 (9)0.78666 (12)0.0376 (4)
O20.1152 (3)0.72490 (9)0.34743 (13)0.0459 (4)
O3−0.2299 (3)0.75225 (9)0.27204 (13)0.0438 (4)
N10.0743 (3)0.53679 (9)0.64593 (13)0.0282 (3)
N20.4543 (3)0.40971 (9)0.87697 (14)0.0318 (4)
H2N0.31010.40700.88920.038*
C10.2330 (3)0.56032 (10)0.59558 (15)0.0258 (4)
C20.4049 (3)0.48646 (10)0.73331 (15)0.0269 (4)
C30.1648 (3)0.49260 (10)0.72696 (15)0.0272 (4)
C4−0.0858 (3)0.62176 (10)0.46463 (15)0.0276 (4)
H4A−0.17000.59040.50140.033*
C5−0.1981 (4)0.66419 (10)0.39564 (16)0.0305 (4)
H5A−0.35670.66080.38400.037*
C6−0.0849 (4)0.71564 (11)0.33756 (16)0.0324 (4)
C7−0.1334 (6)0.80731 (14)0.2156 (2)0.0577 (7)
H7A−0.24720.82590.16240.087*
H7B−0.00760.78910.18170.087*
H7C−0.08000.84420.26450.087*
C80.5374 (3)0.44672 (10)0.80461 (16)0.0294 (4)
H8A0.69450.44600.80140.035*
C90.5922 (4)0.36708 (12)0.95625 (17)0.0361 (5)
C100.4347 (5)0.3335 (2)1.0225 (3)0.0814 (12)
H10A0.33030.30380.97880.122*
H10B0.35050.36921.05550.122*
H10C0.51970.30551.07670.122*
C110.7586 (5)0.41439 (16)1.0220 (2)0.0563 (7)
H11A0.67610.45011.05580.084*
H11B0.85830.43640.97660.084*
H11C0.84750.38691.07560.084*
C120.7262 (5)0.31403 (14)0.9007 (2)0.0548 (7)
H12A0.62310.28440.85620.082*
H12B0.81570.28560.95290.082*
H12C0.82580.33820.85750.082*
U11U22U33U12U13U23
S10.0213 (2)0.0381 (3)0.0374 (3)0.00031 (19)0.00743 (19)0.0062 (2)
S20.0267 (2)0.0302 (2)0.0356 (3)−0.00246 (19)0.00762 (19)0.0066 (2)
O10.0256 (7)0.0497 (9)0.0387 (8)−0.0037 (6)0.0087 (6)0.0120 (7)
O20.0472 (10)0.0462 (10)0.0439 (9)−0.0114 (8)0.0037 (7)0.0139 (8)
O30.0543 (10)0.0398 (9)0.0380 (9)0.0094 (8)0.0081 (7)0.0129 (7)
N10.0239 (8)0.0303 (8)0.0313 (8)−0.0003 (6)0.0068 (6)0.0025 (7)
N20.0248 (8)0.0362 (9)0.0348 (9)0.0008 (7)0.0058 (7)0.0050 (7)
C10.0234 (9)0.0245 (9)0.0296 (9)−0.0002 (7)0.0044 (7)−0.0018 (7)
C20.0253 (9)0.0271 (9)0.0289 (10)−0.0021 (7)0.0061 (7)0.0007 (7)
C30.0249 (9)0.0284 (9)0.0285 (9)−0.0022 (7)0.0043 (7)−0.0007 (8)
C40.0274 (9)0.0264 (9)0.0300 (10)−0.0016 (7)0.0081 (7)−0.0017 (7)
C50.0324 (10)0.0292 (10)0.0302 (10)0.0011 (8)0.0049 (8)−0.0019 (8)
C60.0431 (12)0.0279 (10)0.0264 (10)0.0009 (9)0.0043 (8)−0.0012 (8)
C70.080 (2)0.0452 (14)0.0496 (15)0.0083 (14)0.0150 (14)0.0224 (12)
C80.0236 (9)0.0312 (10)0.0339 (10)−0.0012 (7)0.0049 (7)−0.0029 (8)
C90.0378 (11)0.0367 (11)0.0332 (11)0.0052 (9)0.0018 (9)0.0067 (9)
C100.0503 (17)0.109 (3)0.087 (2)0.0109 (18)0.0177 (16)0.059 (2)
C110.0666 (18)0.0566 (17)0.0426 (14)0.0052 (14)−0.0073 (13)−0.0017 (12)
C120.0664 (18)0.0447 (14)0.0521 (16)0.0155 (13)0.0012 (13)0.0014 (12)
S1—C11.736 (2)C5—H5A0.9500
S1—C21.738 (2)C7—H7A0.9800
S2—C41.743 (2)C7—H7B0.9800
S2—C11.759 (2)C7—H7C0.9800
O1—C31.246 (2)C8—H8A0.9500
O2—C61.209 (3)C9—C101.493 (4)
O3—C61.343 (3)C9—C121.530 (3)
O3—C71.447 (3)C9—C111.537 (4)
N1—C11.295 (2)C10—H10A0.9800
N1—C31.409 (3)C10—H10B0.9800
N2—C81.317 (3)C10—H10C0.9800
N2—C91.488 (3)C11—H11A0.9800
N2—H2N0.9000C11—H11B0.9800
C2—C81.379 (3)C11—H11C0.9800
C2—C31.441 (3)C12—H12A0.9800
C4—C51.335 (3)C12—H12B0.9800
C4—H4A0.9500C12—H12C0.9800
C5—C61.458 (3)
C1—S1—C288.09 (10)H7A—C7—H7C109.5
C4—S2—C199.97 (9)H7B—C7—H7C109.5
C6—O3—C7115.7 (2)N2—C8—C2122.48 (19)
C1—N1—C3109.79 (16)N2—C8—H8A118.8
C8—N2—C9124.02 (18)C2—C8—H8A118.8
C8—N2—H2N127.3N2—C9—C10107.0 (2)
C9—N2—H2N108.6N2—C9—C12109.43 (19)
N1—C1—S1118.72 (15)C10—C9—C12112.1 (3)
N1—C1—S2126.69 (15)N2—C9—C11108.98 (19)
S1—C1—S2114.53 (11)C10—C9—C11111.1 (2)
C8—C2—C3125.64 (18)C12—C9—C11108.2 (2)
C8—C2—S1124.06 (15)C9—C10—H10A109.5
C3—C2—S1110.26 (14)C9—C10—H10B109.5
O1—C3—N1122.95 (18)H10A—C10—H10B109.5
O1—C3—C2123.95 (18)C9—C10—H10C109.5
N1—C3—C2113.10 (16)H10A—C10—H10C109.5
C5—C4—S2124.43 (16)H10B—C10—H10C109.5
C5—C4—H4A117.8C9—C11—H11A109.5
S2—C4—H4A117.8C9—C11—H11B109.5
C4—C5—C6122.0 (2)H11A—C11—H11B109.5
C4—C5—H5A119.0C9—C11—H11C109.5
C6—C5—H5A119.0H11A—C11—H11C109.5
O2—C6—O3123.7 (2)H11B—C11—H11C109.5
O2—C6—C5124.3 (2)C9—C12—H12A109.5
O3—C6—C5111.96 (19)C9—C12—H12B109.5
O3—C7—H7A109.5H12A—C12—H12B109.5
O3—C7—H7B109.5C9—C12—H12C109.5
H7A—C7—H7B109.5H12A—C12—H12C109.5
O3—C7—H7C109.5H12B—C12—H12C109.5
C3—N1—C1—S10.2 (2)S1—C2—C3—N1−1.8 (2)
C3—N1—C1—S2−177.08 (15)C1—S2—C4—C5174.49 (18)
C2—S1—C1—N1−1.00 (17)S2—C4—C5—C6−1.9 (3)
C2—S1—C1—S2176.56 (12)C7—O3—C6—O2−2.9 (3)
C4—S2—C1—N1−11.2 (2)C7—O3—C6—C5176.5 (2)
C4—S2—C1—S1171.44 (11)C4—C5—C6—O2−1.0 (3)
C1—S1—C2—C8179.57 (19)C4—C5—C6—O3179.54 (19)
C1—S1—C2—C31.47 (15)C9—N2—C8—C2−179.01 (19)
C1—N1—C3—O1−179.05 (19)C3—C2—C8—N2−0.7 (3)
C1—N1—C3—C21.0 (2)S1—C2—C8—N2−178.46 (16)
C8—C2—C3—O10.3 (3)C8—N2—C9—C10−179.7 (3)
S1—C2—C3—O1178.34 (17)C8—N2—C9—C12−58.0 (3)
C8—C2—C3—N1−179.81 (19)C8—N2—C9—C1160.1 (3)
D—H···AD—HH···AD···AD—H···A
N2—H2N···O10.902.212.777 (2)120
C4—H4A···N10.952.462.926 (3)110
C8—H8A···O1i0.952.183.117 (3)171
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2N⋯O10.902.212.777 (2)120
C8—H8A⋯O1i0.952.183.117 (3)171

Symmetry code: (i) .

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