Literature DB >> 21588678

N-[(Z)-4-Meth-oxy-benzyl-idene](meth-oxy-carbon-yl)methanamine oxide.

Zeynep Keleşoğlu, Zeynep Gültekin, Orhan Büyükgüngör.   

Abstract

The title compound, C(11)H(13)NO(4), contains a nitrone group, C=N-O-R, the geometry of which shows a Z configuration with near planarity (r.m.s. deviation = 0.0787 Å) around the C=N double bond. An intra-molecular C-H⋯O hydrogen bond generates an S(6) ring motif. In the crystal packing, mol-ecules are linked into R(2) (2)(12) dimers and R(2) (2)(14) rings via C-H⋯O inter-molecular hydrogen bonds.

Entities:  

Year:  2010        PMID: 21588678      PMCID: PMC3008080          DOI: 10.1107/S1600536810032289

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the application and synthesis of nitro­nes, see: Merino (2004 ▶); Mocours et al. (1995 ▶); Frederickson (1997 ▶); Gothelf & Jorgensen (2000 ▶); Merino et al. (1998 ▶); McCaig et al. (1998 ▶); Desvergnes et al. (2005 ▶); Hanselmann et al. (2003 ▶); Pillard et al. (2007 ▶); Merino et al. (2008 ▶); Kobayashi et al. (2000 ▶). For the synthesis of the title compound, see: Diez-Martinez et al. (2010 ▶). For related structures, see: Bedford et al. (1991 ▶); Kliegel et al. (1998 ▶); Greci & Sgarabotto (1984 ▶); Christensen et al. (1990 ▶); Merino et al. (1996 ▶); Olszewski & Stadnicka (1995 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C11H13NO4 M = 223.22 Orthorhombic, a = 4.3808 (3) Å b = 9.8207 (7) Å c = 25.7780 (17) Å V = 1109.03 (13) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.77 × 0.46 × 0.25 mm

Data collection

Stoe IPDS II diffractometer Absorption correction: integration (X-RED32; Stoe & Cie, 2002 ▶) T min = 0.953, T max = 0.981 5112 measured reflections 1391 independent reflections 1053 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.082 S = 0.96 1391 reflections 146 parameters H-atom parameters constrained Δρmax = 0.09 e Å−3 Δρmin = −0.09 e Å−3 Data collection: X-AREA (Stoe & Cie, 2002 ▶); cell refinement: X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810032289/bv2158sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032289/bv2158Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13NO4F(000) = 472
Mr = 223.22Dx = 1.337 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 5112 reflections
a = 4.3808 (3) Åθ = 2.1–27.1°
b = 9.8207 (7) ŵ = 0.10 mm1
c = 25.7780 (17) ÅT = 296 K
V = 1109.03 (13) Å3Prism, colourless
Z = 40.77 × 0.46 × 0.25 mm
Stoe IPDS II diffractometer1391 independent reflections
Radiation source: fine-focus sealed tube1053 reflections with I > 2σ(I)
graphiteRint = 0.051
rotation method scansθmax = 26.5°, θmin = 2.2°
Absorption correction: integration (X-RED32; Stoe & Cie, 2002)h = −5→5
Tmin = 0.953, Tmax = 0.981k = −12→11
5112 measured reflectionsl = −23→32
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.034H-atom parameters constrained
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.0465P)2] where P = (Fo2 + 2Fc2)/3
S = 0.96(Δ/σ)max < 0.001
1391 reflectionsΔρmax = 0.09 e Å3
146 parametersΔρmin = −0.09 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.030 (4)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.6012 (4)0.7397 (2)0.36104 (8)0.0608 (5)
C20.5996 (5)0.8775 (2)0.34738 (10)0.0734 (6)
H20.70920.93920.36740.088*
C30.4417 (6)0.9235 (2)0.30549 (11)0.0808 (7)
H30.44491.01570.29730.097*
C40.2769 (5)0.8343 (2)0.27506 (10)0.0700 (6)
C50.2692 (5)0.6979 (2)0.28817 (9)0.0669 (6)
H50.15500.63730.26840.080*
C60.4307 (5)0.6515 (2)0.33055 (9)0.0642 (5)
H60.42510.55940.33890.077*
C7−0.0090 (7)0.8031 (3)0.19685 (11)0.0960 (8)
H7A−0.16600.75160.21390.115*
H7B0.13940.74210.18240.115*
H7C−0.09770.85680.16960.115*
C80.7873 (4)0.7021 (2)0.40462 (9)0.0663 (6)
H80.89110.77260.42100.080*
C91.0392 (4)0.5582 (3)0.46700 (10)0.0735 (6)
H9A1.13580.64330.47670.088*
H9B1.19720.49440.45680.088*
C100.8628 (4)0.5022 (2)0.51187 (9)0.0651 (6)
C110.8063 (7)0.3210 (2)0.57071 (12)0.0936 (8)
H11A0.59730.30640.56100.112*
H11B0.81450.37980.60040.112*
H11C0.89990.23540.57900.112*
N10.8278 (3)0.58064 (18)0.42386 (7)0.0635 (5)
O10.1341 (5)0.88972 (18)0.23310 (7)0.0935 (5)
O20.6925 (3)0.47139 (14)0.40781 (7)0.0756 (4)
O30.6482 (4)0.55930 (17)0.53126 (7)0.0837 (5)
O40.9683 (3)0.38384 (16)0.52795 (7)0.0818 (5)
U11U22U33U12U13U23
C10.0565 (10)0.0555 (12)0.0703 (14)−0.0055 (9)0.0131 (10)−0.0071 (10)
C20.0762 (13)0.0549 (13)0.0892 (17)−0.0113 (11)0.0137 (13)−0.0082 (12)
C30.0940 (15)0.0523 (13)0.0962 (18)−0.0079 (12)0.0194 (15)−0.0010 (13)
C40.0741 (12)0.0629 (14)0.0728 (15)0.0046 (11)0.0182 (11)0.0054 (11)
C50.0696 (12)0.0591 (12)0.0720 (16)−0.0034 (10)0.0081 (11)−0.0023 (10)
C60.0685 (11)0.0501 (11)0.0741 (14)−0.0057 (9)0.0072 (11)−0.0025 (10)
C70.1023 (18)0.098 (2)0.0877 (18)0.0114 (18)−0.0029 (17)0.0066 (15)
C80.0579 (10)0.0614 (12)0.0794 (15)−0.0110 (10)0.0088 (11)−0.0134 (11)
C90.0527 (9)0.0765 (15)0.0913 (16)0.0053 (10)−0.0047 (12)−0.0109 (12)
C100.0557 (9)0.0672 (13)0.0725 (14)0.0086 (10)−0.0106 (10)−0.0172 (11)
C110.1051 (17)0.0735 (16)0.102 (2)0.0058 (15)−0.0075 (17)0.0015 (14)
N10.0534 (7)0.0632 (11)0.0740 (12)−0.0055 (8)0.0053 (8)−0.0128 (9)
O10.1121 (12)0.0784 (11)0.0898 (12)0.0083 (11)0.0037 (11)0.0148 (10)
O20.0860 (9)0.0599 (9)0.0809 (10)−0.0109 (8)−0.0067 (9)−0.0087 (7)
O30.0827 (9)0.0877 (11)0.0806 (11)0.0308 (9)0.0081 (9)−0.0077 (9)
O40.0730 (8)0.0676 (10)0.1048 (12)0.0181 (8)0.0022 (9)−0.0034 (9)
C1—C61.388 (3)C7—H7C0.9600
C1—C21.399 (3)C8—N11.304 (3)
C1—C81.436 (3)C8—H80.9300
C2—C31.359 (4)C9—N11.464 (3)
C2—H20.9300C9—C101.496 (3)
C3—C41.380 (3)C9—H9A0.9700
C3—H30.9300C9—H9B0.9700
C4—O11.363 (3)C10—O31.203 (2)
C4—C51.382 (3)C10—O41.318 (3)
C5—C61.379 (3)C11—O41.449 (3)
C5—H50.9300C11—H11A0.9600
C6—H60.9300C11—H11B0.9600
C7—O11.410 (3)C11—H11C0.9600
C7—H7A0.9600N1—O21.294 (2)
C7—H7B0.9600
C6—C1—C2117.3 (2)N1—C8—C1127.57 (19)
C6—C1—C8126.0 (2)N1—C8—H8116.2
C2—C1—C8116.64 (19)C1—C8—H8116.2
C3—C2—C1121.6 (2)N1—C9—C10108.42 (15)
C3—C2—H2119.2N1—C9—H9A110.0
C1—C2—H2119.2C10—C9—H9A110.0
C2—C3—C4120.5 (2)N1—C9—H9B110.0
C2—C3—H3119.8C10—C9—H9B110.0
C4—C3—H3119.8H9A—C9—H9B108.4
O1—C4—C5124.8 (2)O3—C10—O4123.7 (2)
O1—C4—C3116.0 (2)O3—C10—C9123.6 (2)
C5—C4—C3119.3 (2)O4—C10—C9112.71 (18)
C4—C5—C6120.1 (2)O4—C11—H11A109.5
C4—C5—H5120.0O4—C11—H11B109.5
C6—C5—H5120.0H11A—C11—H11B109.5
C5—C6—C1121.3 (2)O4—C11—H11C109.5
C5—C6—H6119.4H11A—C11—H11C109.5
C1—C6—H6119.4H11B—C11—H11C109.5
O1—C7—H7A109.5O2—N1—C8125.08 (18)
O1—C7—H7B109.5O2—N1—C9114.05 (17)
H7A—C7—H7B109.5C8—N1—C9120.86 (17)
O1—C7—H7C109.5C4—O1—C7119.3 (2)
H7A—C7—H7C109.5C10—O4—C11116.31 (17)
H7B—C7—H7C109.5
C6—C1—C2—C3−1.0 (3)C2—C1—C8—N1−179.0 (2)
C8—C1—C2—C3177.2 (2)N1—C9—C10—O3−57.6 (3)
C1—C2—C3—C40.1 (3)N1—C9—C10—O4122.64 (18)
C2—C3—C4—O1−178.1 (2)C1—C8—N1—O2−3.3 (3)
C2—C3—C4—C51.2 (3)C1—C8—N1—C9176.68 (18)
O1—C4—C5—C6177.8 (2)C10—C9—N1—O2−60.8 (2)
C3—C4—C5—C6−1.5 (3)C10—C9—N1—C8119.2 (2)
C4—C5—C6—C10.5 (3)C5—C4—O1—C7−6.6 (3)
C2—C1—C6—C50.7 (3)C3—C4—O1—C7172.7 (2)
C8—C1—C6—C5−177.30 (19)O3—C10—O4—C111.4 (3)
C6—C1—C8—N1−0.9 (3)C9—C10—O4—C11−178.8 (2)
D—H···AD—HH···AD···AD—H···A
C6—H6···O20.932.302.900 (3)122
C8—H8···O3i0.932.353.275 (3)175
C9—H9B···O2ii0.972.523.353 (3)144
C11—H11C···O2iii0.962.433.379 (3)172
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O20.932.302.900 (3)122
C8—H8⋯O3i0.932.353.275 (3)175
C9—H9B⋯O2ii0.972.523.353 (3)144
C11—H11C⋯O2iii0.962.433.379 (3)172

Symmetry codes: (i) ; (ii) ; (iii) .

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