Literature DB >> 21588643

2-Methyl-benzimidazolium thio-cyanate-2-methyl-benzimidazole (1/1).

Shayma A Shaker1, Hamid Khaledi, Hapipah Mohd Ali.   

Abstract

In the crystal structure of the title compound, C(8)H(9)N(2) (+)·SCN(-)·C(8)H(8)N(2), the three components are linked by inter-molecular N-H⋯N and N-H⋯S hydrogen bonds into infinite chains along the c axis.

Entities:  

Year:  2010        PMID: 21588643      PMCID: PMC3008113          DOI: 10.1107/S1600536810031181

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Bhattacharya et al. (2004 ▶); Ding et al. (2004 ▶); Huang et al. (2006 ▶). For applications of benzimidazole derivatives in crystal engineering, see: Cai et al. (2002 ▶). For the biological properties of benzimidazole derivatives, see: Refaat (2010 ▶); Ansari & Lal (2009 ▶).

Experimental

Crystal data

C8H9N2 +·SCN−·C8H8N2 M = 323.42 Monoclinic, a = 11.0952 (7) Å b = 6.9664 (4) Å c = 21.4195 (13) Å β = 100.745 (1)° V = 1626.56 (17) Å3 Z = 4 Mo Kα radiation μ = 0.21 mm−1 T = 100 K 0.25 × 0.25 × 0.06 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.950, T max = 0.988 8812 measured reflections 3193 independent reflections 2427 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.093 S = 1.03 3193 reflections 222 parameters 3 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.28 e Å−3 Data collection: APEX2 (Bruker, 2007 ▶); cell refinement: SAINT (Bruker, 2007 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: SHELXL97 and publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810031181/pv2314sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031181/pv2314Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H9N2+·SCN·C8H8N2F(000) = 680
Mr = 323.42Dx = 1.321 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 1739 reflections
a = 11.0952 (7) Åθ = 2.3–25.1°
b = 6.9664 (4) ŵ = 0.21 mm1
c = 21.4195 (13) ÅT = 100 K
β = 100.745 (1)°Plate, yellow
V = 1626.56 (17) Å30.25 × 0.25 × 0.06 mm
Z = 4
Bruker APEXII CCD diffractometer3193 independent reflections
Radiation source: fine-focus sealed tube2427 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 26.0°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.950, Tmax = 0.988k = −7→8
8812 measured reflectionsl = −26→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.093H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.035P)2 + 0.6349P] where P = (Fo2 + 2Fc2)/3
3193 reflections(Δ/σ)max < 0.001
222 parametersΔρmax = 0.20 e Å3
3 restraintsΔρmin = −0.28 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.76009 (14)0.1676 (2)0.43464 (7)0.0183 (4)
H1N0.7853 (18)0.196 (3)0.4761 (8)0.033 (6)*
N20.76652 (13)0.1089 (2)0.33548 (7)0.0169 (3)
H2N0.7976 (19)0.090 (3)0.2999 (8)0.038 (7)*
C10.96598 (16)0.1988 (3)0.40543 (9)0.0233 (4)
H1A1.01050.07840.41650.035*
H1B0.98510.28890.44100.035*
H1C0.99080.25460.36780.035*
C20.83267 (16)0.1602 (3)0.39179 (8)0.0174 (4)
C30.64561 (16)0.0800 (3)0.34260 (9)0.0170 (4)
C40.54091 (16)0.0242 (3)0.29996 (9)0.0198 (4)
H40.5429−0.00240.25670.024*
C50.43398 (17)0.0096 (3)0.32393 (10)0.0244 (5)
H50.3608−0.02900.29630.029*
C60.43008 (17)0.0498 (3)0.38747 (10)0.0262 (5)
H60.35450.03810.40190.031*
C70.53387 (17)0.1064 (3)0.42968 (10)0.0227 (4)
H70.53170.13520.47280.027*
C80.64148 (16)0.1190 (3)0.40569 (9)0.0173 (4)
N30.49936 (14)0.4693 (2)0.66246 (7)0.0179 (3)
H3N0.5709 (14)0.483 (3)0.6527 (9)0.022 (5)*
N40.36143 (13)0.4455 (2)0.72545 (7)0.0175 (3)
C90.57509 (16)0.5348 (3)0.77709 (9)0.0236 (4)
H9A0.53770.58430.81190.035*
H9B0.62830.63340.76400.035*
H9C0.62390.42050.79150.035*
C100.47689 (16)0.4834 (3)0.72223 (9)0.0174 (4)
C110.39134 (16)0.4178 (3)0.62290 (9)0.0173 (4)
C120.36142 (17)0.3839 (3)0.55802 (9)0.0212 (4)
H120.42090.39440.53150.025*
C130.24092 (18)0.3343 (3)0.53365 (9)0.0235 (4)
H130.21710.30920.48950.028*
C140.15347 (18)0.3204 (3)0.57299 (9)0.0239 (4)
H140.07150.28650.55490.029*
C150.18384 (16)0.3548 (3)0.63752 (9)0.0204 (4)
H150.12400.34550.66380.024*
C160.30494 (16)0.4037 (3)0.66294 (8)0.0167 (4)
S10.79070 (4)0.52630 (8)0.64995 (2)0.02656 (15)
N50.83250 (16)0.2375 (3)0.56491 (8)0.0283 (4)
C170.81466 (16)0.3567 (3)0.60007 (9)0.0208 (4)
U11U22U33U12U13U23
N10.0217 (8)0.0189 (9)0.0143 (8)0.0006 (7)0.0030 (6)−0.0004 (7)
N20.0162 (8)0.0193 (9)0.0156 (8)0.0004 (6)0.0041 (6)−0.0006 (7)
C10.0184 (10)0.0266 (12)0.0237 (10)0.0000 (8)0.0006 (8)−0.0034 (9)
C20.0200 (9)0.0152 (10)0.0169 (9)0.0024 (7)0.0029 (7)0.0009 (8)
C30.0186 (9)0.0132 (10)0.0198 (10)0.0019 (7)0.0051 (7)0.0022 (8)
C40.0197 (9)0.0175 (10)0.0210 (10)0.0005 (8)0.0008 (7)0.0007 (9)
C50.0181 (9)0.0196 (11)0.0343 (12)−0.0004 (8)0.0016 (8)0.0046 (9)
C60.0213 (10)0.0226 (11)0.0380 (12)0.0022 (8)0.0145 (9)0.0068 (10)
C70.0283 (11)0.0180 (11)0.0248 (10)0.0030 (8)0.0125 (8)0.0040 (9)
C80.0197 (9)0.0115 (10)0.0207 (10)0.0015 (7)0.0043 (7)0.0028 (8)
N30.0143 (8)0.0202 (9)0.0205 (8)0.0002 (7)0.0063 (6)0.0005 (7)
N40.0178 (8)0.0181 (9)0.0165 (8)−0.0002 (6)0.0031 (6)0.0013 (7)
C90.0197 (10)0.0262 (11)0.0242 (10)−0.0011 (8)0.0021 (8)−0.0001 (9)
C100.0180 (9)0.0149 (10)0.0193 (9)0.0001 (7)0.0032 (7)−0.0002 (8)
C110.0192 (9)0.0131 (10)0.0193 (9)0.0011 (7)0.0027 (7)0.0009 (8)
C120.0291 (10)0.0159 (10)0.0201 (10)0.0016 (8)0.0083 (8)0.0022 (8)
C130.0328 (11)0.0177 (11)0.0177 (10)−0.0005 (9)−0.0011 (8)0.0000 (9)
C140.0230 (10)0.0202 (11)0.0258 (11)−0.0027 (8)−0.0018 (8)0.0027 (9)
C150.0182 (9)0.0188 (11)0.0240 (10)−0.0017 (8)0.0032 (8)0.0029 (9)
C160.0213 (9)0.0126 (9)0.0159 (9)0.0023 (7)0.0025 (7)0.0027 (8)
S10.0226 (3)0.0293 (3)0.0296 (3)−0.0040 (2)0.0095 (2)−0.0066 (2)
N50.0336 (10)0.0324 (11)0.0184 (9)0.0026 (8)0.0033 (7)−0.0006 (8)
C170.0166 (9)0.0285 (12)0.0165 (9)−0.0007 (8)0.0010 (7)0.0060 (9)
N1—C21.330 (2)N3—C111.380 (2)
N1—C81.388 (2)N3—H3N0.862 (15)
N1—H1N0.901 (15)N4—C101.322 (2)
N2—C21.338 (2)N4—C161.399 (2)
N2—C31.393 (2)C9—C101.489 (2)
N2—H2N0.902 (15)C9—H9A0.9800
C1—C21.478 (2)C9—H9B0.9800
C1—H1A0.9800C9—H9C0.9800
C1—H1B0.9800C11—C121.387 (3)
C1—H1C0.9800C11—C161.404 (3)
C3—C81.387 (2)C12—C131.385 (3)
C3—C41.392 (2)C12—H120.9500
C4—C51.381 (3)C13—C141.402 (3)
C4—H40.9500C13—H130.9500
C5—C61.398 (3)C14—C151.381 (3)
C5—H50.9500C14—H140.9500
C6—C71.382 (3)C15—C161.395 (2)
C6—H60.9500C15—H150.9500
C7—C81.388 (3)S1—C171.647 (2)
C7—H70.9500N5—C171.163 (2)
N3—C101.353 (2)
C2—N1—C8109.14 (15)C10—N3—C11107.93 (15)
C2—N1—H1N124.9 (13)C10—N3—H3N124.1 (13)
C8—N1—H1N125.9 (13)C11—N3—H3N127.8 (13)
C2—N2—C3108.51 (15)C10—N4—C16104.90 (15)
C2—N2—H2N124.6 (14)C10—C9—H9A109.5
C3—N2—H2N126.8 (14)C10—C9—H9B109.5
C2—C1—H1A109.5H9A—C9—H9B109.5
C2—C1—H1B109.5C10—C9—H9C109.5
H1A—C1—H1B109.5H9A—C9—H9C109.5
C2—C1—H1C109.5H9B—C9—H9C109.5
H1A—C1—H1C109.5N4—C10—N3112.71 (15)
H1B—C1—H1C109.5N4—C10—C9125.46 (17)
N1—C2—N2109.35 (15)N3—C10—C9121.82 (16)
N1—C2—C1124.67 (16)N3—C11—C12132.64 (17)
N2—C2—C1125.96 (17)N3—C11—C16104.88 (16)
C8—C3—C4121.23 (17)C12—C11—C16122.48 (17)
C8—C3—N2106.61 (15)C13—C12—C11116.98 (17)
C4—C3—N2132.17 (17)C13—C12—H12121.5
C5—C4—C3116.49 (18)C11—C12—H12121.5
C5—C4—H4121.8C12—C13—C14121.20 (18)
C3—C4—H4121.8C12—C13—H13119.4
C4—C5—C6122.11 (18)C14—C13—H13119.4
C4—C5—H5118.9C15—C14—C13121.49 (18)
C6—C5—H5118.9C15—C14—H14119.3
C7—C6—C5121.38 (18)C13—C14—H14119.3
C7—C6—H6119.3C14—C15—C16118.08 (17)
C5—C6—H6119.3C14—C15—H15121.0
C6—C7—C8116.43 (18)C16—C15—H15121.0
C6—C7—H7121.8C15—C16—N4130.66 (17)
C8—C7—H7121.8C15—C16—C11119.76 (17)
C3—C8—C7122.36 (17)N4—C16—C11109.58 (15)
C3—C8—N1106.39 (15)N5—C17—S1179.47 (18)
C7—C8—N1131.25 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N50.90 (2)1.90 (2)2.799 (2)176 (2)
N2—H2N···N4i0.90 (2)1.88 (2)2.781 (2)179 (2)
N3—H3N···S10.86 (2)2.47 (2)3.317 (2)168 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯N50.90 (2)1.90 (2)2.799 (2)176 (2)
N2—H2N⋯N4i0.90 (2)1.88 (2)2.781 (2)179 (2)
N3—H3N⋯S10.86 (2)2.47 (2)3.317 (2)168 (2)

Symmetry code: (i) .

  3 in total

1.  Synthesis and anticancer activity of some novel 2-substituted benzimidazole derivatives.

Authors:  Hanan M Refaat
Journal:  Eur J Med Chem       Date:  2010-03-25       Impact factor: 6.514

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The mononuclear cobalt(II) complex CoII(DMBDIZ)2(NCS)2, where DMBDIZ is 2,6-dimethylbenzo[1,2-d:4,5-d']diimidazole.

Authors:  Chen-Xin Cai; Yun-Qi Tian; Yi-Zhi Li; Xiao-Zeng You
Journal:  Acta Crystallogr C       Date:  2002-07-31       Impact factor: 1.172

  3 in total
  1 in total

1.  2-Methyl-benzimidazolium thio-cyanate.

Authors:  Shayma A Shaker; Hamid Khaledi; Hapipah Mohd Ali
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-10-23
  1 in total

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