| Literature DB >> 21588643 |
Shayma A Shaker1, Hamid Khaledi, Hapipah Mohd Ali.
Abstract
In the crystal structure of the title compound, C(8)H(9)N(2) (+)·SCN(-)·C(8)H(8)N(2), the three components are linked by inter-molecular N-H⋯N and N-H⋯S hydrogen bonds into infinite chains along the c axis.Entities:
Year: 2010 PMID: 21588643 PMCID: PMC3008113 DOI: 10.1107/S1600536810031181
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C8H9N2+·SCN−·C8H8N2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 1739 reflections |
| θ = 2.3–25.1° | |
| µ = 0.21 mm−1 | |
| β = 100.745 (1)° | Plate, yellow |
| 0.25 × 0.25 × 0.06 mm | |
| Bruker APEXII CCD diffractometer | 3193 independent reflections |
| Radiation source: fine-focus sealed tube | 2427 reflections with |
| graphite | |
| φ and ω scans | θmax = 26.0°, θmin = 1.9° |
| Absorption correction: multi-scan ( | |
| 8812 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3193 reflections | (Δ/σ)max < 0.001 |
| 222 parameters | Δρmax = 0.20 e Å−3 |
| 3 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| N1 | 0.76009 (14) | 0.1676 (2) | 0.43464 (7) | 0.0183 (4) | |
| H1N | 0.7853 (18) | 0.196 (3) | 0.4761 (8) | 0.033 (6)* | |
| N2 | 0.76652 (13) | 0.1089 (2) | 0.33548 (7) | 0.0169 (3) | |
| H2N | 0.7976 (19) | 0.090 (3) | 0.2999 (8) | 0.038 (7)* | |
| C1 | 0.96598 (16) | 0.1988 (3) | 0.40543 (9) | 0.0233 (4) | |
| H1A | 1.0105 | 0.0784 | 0.4165 | 0.035* | |
| H1B | 0.9851 | 0.2889 | 0.4410 | 0.035* | |
| H1C | 0.9908 | 0.2546 | 0.3678 | 0.035* | |
| C2 | 0.83267 (16) | 0.1602 (3) | 0.39179 (8) | 0.0174 (4) | |
| C3 | 0.64561 (16) | 0.0800 (3) | 0.34260 (9) | 0.0170 (4) | |
| C4 | 0.54091 (16) | 0.0242 (3) | 0.29996 (9) | 0.0198 (4) | |
| H4 | 0.5429 | −0.0024 | 0.2567 | 0.024* | |
| C5 | 0.43398 (17) | 0.0096 (3) | 0.32393 (10) | 0.0244 (5) | |
| H5 | 0.3608 | −0.0290 | 0.2963 | 0.029* | |
| C6 | 0.43008 (17) | 0.0498 (3) | 0.38747 (10) | 0.0262 (5) | |
| H6 | 0.3545 | 0.0381 | 0.4019 | 0.031* | |
| C7 | 0.53387 (17) | 0.1064 (3) | 0.42968 (10) | 0.0227 (4) | |
| H7 | 0.5317 | 0.1352 | 0.4728 | 0.027* | |
| C8 | 0.64148 (16) | 0.1190 (3) | 0.40569 (9) | 0.0173 (4) | |
| N3 | 0.49936 (14) | 0.4693 (2) | 0.66246 (7) | 0.0179 (3) | |
| H3N | 0.5709 (14) | 0.483 (3) | 0.6527 (9) | 0.022 (5)* | |
| N4 | 0.36143 (13) | 0.4455 (2) | 0.72545 (7) | 0.0175 (3) | |
| C9 | 0.57509 (16) | 0.5348 (3) | 0.77709 (9) | 0.0236 (4) | |
| H9A | 0.5377 | 0.5843 | 0.8119 | 0.035* | |
| H9B | 0.6283 | 0.6334 | 0.7640 | 0.035* | |
| H9C | 0.6239 | 0.4205 | 0.7915 | 0.035* | |
| C10 | 0.47689 (16) | 0.4834 (3) | 0.72223 (9) | 0.0174 (4) | |
| C11 | 0.39134 (16) | 0.4178 (3) | 0.62290 (9) | 0.0173 (4) | |
| C12 | 0.36142 (17) | 0.3839 (3) | 0.55802 (9) | 0.0212 (4) | |
| H12 | 0.4209 | 0.3944 | 0.5315 | 0.025* | |
| C13 | 0.24092 (18) | 0.3343 (3) | 0.53365 (9) | 0.0235 (4) | |
| H13 | 0.2171 | 0.3092 | 0.4895 | 0.028* | |
| C14 | 0.15347 (18) | 0.3204 (3) | 0.57299 (9) | 0.0239 (4) | |
| H14 | 0.0715 | 0.2865 | 0.5549 | 0.029* | |
| C15 | 0.18384 (16) | 0.3548 (3) | 0.63752 (9) | 0.0204 (4) | |
| H15 | 0.1240 | 0.3455 | 0.6638 | 0.024* | |
| C16 | 0.30494 (16) | 0.4037 (3) | 0.66294 (8) | 0.0167 (4) | |
| S1 | 0.79070 (4) | 0.52630 (8) | 0.64995 (2) | 0.02656 (15) | |
| N5 | 0.83250 (16) | 0.2375 (3) | 0.56491 (8) | 0.0283 (4) | |
| C17 | 0.81466 (16) | 0.3567 (3) | 0.60007 (9) | 0.0208 (4) |
| N1 | 0.0217 (8) | 0.0189 (9) | 0.0143 (8) | 0.0006 (7) | 0.0030 (6) | −0.0004 (7) |
| N2 | 0.0162 (8) | 0.0193 (9) | 0.0156 (8) | 0.0004 (6) | 0.0041 (6) | −0.0006 (7) |
| C1 | 0.0184 (10) | 0.0266 (12) | 0.0237 (10) | 0.0000 (8) | 0.0006 (8) | −0.0034 (9) |
| C2 | 0.0200 (9) | 0.0152 (10) | 0.0169 (9) | 0.0024 (7) | 0.0029 (7) | 0.0009 (8) |
| C3 | 0.0186 (9) | 0.0132 (10) | 0.0198 (10) | 0.0019 (7) | 0.0051 (7) | 0.0022 (8) |
| C4 | 0.0197 (9) | 0.0175 (10) | 0.0210 (10) | 0.0005 (8) | 0.0008 (7) | 0.0007 (9) |
| C5 | 0.0181 (9) | 0.0196 (11) | 0.0343 (12) | −0.0004 (8) | 0.0016 (8) | 0.0046 (9) |
| C6 | 0.0213 (10) | 0.0226 (11) | 0.0380 (12) | 0.0022 (8) | 0.0145 (9) | 0.0068 (10) |
| C7 | 0.0283 (11) | 0.0180 (11) | 0.0248 (10) | 0.0030 (8) | 0.0125 (8) | 0.0040 (9) |
| C8 | 0.0197 (9) | 0.0115 (10) | 0.0207 (10) | 0.0015 (7) | 0.0043 (7) | 0.0028 (8) |
| N3 | 0.0143 (8) | 0.0202 (9) | 0.0205 (8) | 0.0002 (7) | 0.0063 (6) | 0.0005 (7) |
| N4 | 0.0178 (8) | 0.0181 (9) | 0.0165 (8) | −0.0002 (6) | 0.0031 (6) | 0.0013 (7) |
| C9 | 0.0197 (10) | 0.0262 (11) | 0.0242 (10) | −0.0011 (8) | 0.0021 (8) | −0.0001 (9) |
| C10 | 0.0180 (9) | 0.0149 (10) | 0.0193 (9) | 0.0001 (7) | 0.0032 (7) | −0.0002 (8) |
| C11 | 0.0192 (9) | 0.0131 (10) | 0.0193 (9) | 0.0011 (7) | 0.0027 (7) | 0.0009 (8) |
| C12 | 0.0291 (10) | 0.0159 (10) | 0.0201 (10) | 0.0016 (8) | 0.0083 (8) | 0.0022 (8) |
| C13 | 0.0328 (11) | 0.0177 (11) | 0.0177 (10) | −0.0005 (9) | −0.0011 (8) | 0.0000 (9) |
| C14 | 0.0230 (10) | 0.0202 (11) | 0.0258 (11) | −0.0027 (8) | −0.0018 (8) | 0.0027 (9) |
| C15 | 0.0182 (9) | 0.0188 (11) | 0.0240 (10) | −0.0017 (8) | 0.0032 (8) | 0.0029 (9) |
| C16 | 0.0213 (9) | 0.0126 (9) | 0.0159 (9) | 0.0023 (7) | 0.0025 (7) | 0.0027 (8) |
| S1 | 0.0226 (3) | 0.0293 (3) | 0.0296 (3) | −0.0040 (2) | 0.0095 (2) | −0.0066 (2) |
| N5 | 0.0336 (10) | 0.0324 (11) | 0.0184 (9) | 0.0026 (8) | 0.0033 (7) | −0.0006 (8) |
| C17 | 0.0166 (9) | 0.0285 (12) | 0.0165 (9) | −0.0007 (8) | 0.0010 (7) | 0.0060 (9) |
| N1—C2 | 1.330 (2) | N3—C11 | 1.380 (2) |
| N1—C8 | 1.388 (2) | N3—H3N | 0.862 (15) |
| N1—H1N | 0.901 (15) | N4—C10 | 1.322 (2) |
| N2—C2 | 1.338 (2) | N4—C16 | 1.399 (2) |
| N2—C3 | 1.393 (2) | C9—C10 | 1.489 (2) |
| N2—H2N | 0.902 (15) | C9—H9A | 0.9800 |
| C1—C2 | 1.478 (2) | C9—H9B | 0.9800 |
| C1—H1A | 0.9800 | C9—H9C | 0.9800 |
| C1—H1B | 0.9800 | C11—C12 | 1.387 (3) |
| C1—H1C | 0.9800 | C11—C16 | 1.404 (3) |
| C3—C8 | 1.387 (2) | C12—C13 | 1.385 (3) |
| C3—C4 | 1.392 (2) | C12—H12 | 0.9500 |
| C4—C5 | 1.381 (3) | C13—C14 | 1.402 (3) |
| C4—H4 | 0.9500 | C13—H13 | 0.9500 |
| C5—C6 | 1.398 (3) | C14—C15 | 1.381 (3) |
| C5—H5 | 0.9500 | C14—H14 | 0.9500 |
| C6—C7 | 1.382 (3) | C15—C16 | 1.395 (2) |
| C6—H6 | 0.9500 | C15—H15 | 0.9500 |
| C7—C8 | 1.388 (3) | S1—C17 | 1.647 (2) |
| C7—H7 | 0.9500 | N5—C17 | 1.163 (2) |
| N3—C10 | 1.353 (2) | ||
| C2—N1—C8 | 109.14 (15) | C10—N3—C11 | 107.93 (15) |
| C2—N1—H1N | 124.9 (13) | C10—N3—H3N | 124.1 (13) |
| C8—N1—H1N | 125.9 (13) | C11—N3—H3N | 127.8 (13) |
| C2—N2—C3 | 108.51 (15) | C10—N4—C16 | 104.90 (15) |
| C2—N2—H2N | 124.6 (14) | C10—C9—H9A | 109.5 |
| C3—N2—H2N | 126.8 (14) | C10—C9—H9B | 109.5 |
| C2—C1—H1A | 109.5 | H9A—C9—H9B | 109.5 |
| C2—C1—H1B | 109.5 | C10—C9—H9C | 109.5 |
| H1A—C1—H1B | 109.5 | H9A—C9—H9C | 109.5 |
| C2—C1—H1C | 109.5 | H9B—C9—H9C | 109.5 |
| H1A—C1—H1C | 109.5 | N4—C10—N3 | 112.71 (15) |
| H1B—C1—H1C | 109.5 | N4—C10—C9 | 125.46 (17) |
| N1—C2—N2 | 109.35 (15) | N3—C10—C9 | 121.82 (16) |
| N1—C2—C1 | 124.67 (16) | N3—C11—C12 | 132.64 (17) |
| N2—C2—C1 | 125.96 (17) | N3—C11—C16 | 104.88 (16) |
| C8—C3—C4 | 121.23 (17) | C12—C11—C16 | 122.48 (17) |
| C8—C3—N2 | 106.61 (15) | C13—C12—C11 | 116.98 (17) |
| C4—C3—N2 | 132.17 (17) | C13—C12—H12 | 121.5 |
| C5—C4—C3 | 116.49 (18) | C11—C12—H12 | 121.5 |
| C5—C4—H4 | 121.8 | C12—C13—C14 | 121.20 (18) |
| C3—C4—H4 | 121.8 | C12—C13—H13 | 119.4 |
| C4—C5—C6 | 122.11 (18) | C14—C13—H13 | 119.4 |
| C4—C5—H5 | 118.9 | C15—C14—C13 | 121.49 (18) |
| C6—C5—H5 | 118.9 | C15—C14—H14 | 119.3 |
| C7—C6—C5 | 121.38 (18) | C13—C14—H14 | 119.3 |
| C7—C6—H6 | 119.3 | C14—C15—C16 | 118.08 (17) |
| C5—C6—H6 | 119.3 | C14—C15—H15 | 121.0 |
| C6—C7—C8 | 116.43 (18) | C16—C15—H15 | 121.0 |
| C6—C7—H7 | 121.8 | C15—C16—N4 | 130.66 (17) |
| C8—C7—H7 | 121.8 | C15—C16—C11 | 119.76 (17) |
| C3—C8—C7 | 122.36 (17) | N4—C16—C11 | 109.58 (15) |
| C3—C8—N1 | 106.39 (15) | N5—C17—S1 | 179.47 (18) |
| C7—C8—N1 | 131.25 (18) |
| H··· | ||||
| N1—H1N···N5 | 0.90 (2) | 1.90 (2) | 2.799 (2) | 176 (2) |
| N2—H2N···N4i | 0.90 (2) | 1.88 (2) | 2.781 (2) | 179 (2) |
| N3—H3N···S1 | 0.86 (2) | 2.47 (2) | 3.317 (2) | 168 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1 | 0.90 (2) | 1.90 (2) | 2.799 (2) | 176 (2) |
| N2—H2 | 0.90 (2) | 1.88 (2) | 2.781 (2) | 179 (2) |
| N3—H3 | 0.86 (2) | 2.47 (2) | 3.317 (2) | 168 (2) |
Symmetry code: (i) .