Literature DB >> 21588611

4-Phenyl-piperazin-1-ium dihydrogen phosphate.

Manel Essid, Houda Marouani, Mohamed Rzaigui, Salem S Al-Deyab.   

Abstract

The title compound, C(10)H(15)N(2) (+)·H(2)PO(4) (-), is built up from 4-phenyl-piperazin-1-ium cations and dihydrogen phosphate anions. The inter-connection between two adjacent anions is assured by two strong O-H⋯O hydrogen bonds, which lead to the formation of infinite wave-like chains which spread along the a axis. The organic cations connect these chains via N-H⋯O hydrogen bonds. The crystal cohesion and stability are ensured by electrostatic and van der Waals inter-actions which, together with N-H⋯O and O-H⋯O hydrogen bonds, build up a two-dimensional network.

Entities:  

Year:  2010        PMID: 21588611      PMCID: PMC3008102          DOI: 10.1107/S1600536810030813

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological properties of phenyl­piperazines and their derivatives, see: Cohen et al. (1982 ▶); Conrado et al. (2008 ▶); Neves et al. (2003 ▶); Hanano et al. (2000 ▶). For related structures, see: Zouari et al. (1995 ▶); Ben Gharbia et al. (2005 ▶). For a discussion of hydrogen bonding, see: Brown (1976 ▶); Blessing (1986 ▶). For tetra­hedral distortions, see: Baur (1974 ▶). For structural discussion, see: Ferraris & Ivaldi (1984 ▶); Janiak (2000 ▶).

Experimental

Crystal data

C10H15N2H2PO4 M = 260.23 Orthorhombic, a = 6.175 (3) Å b = 8.276 (3) Å c = 24.408 (9) Å V = 1247.3 (9) Å3 Z = 4 Ag Kα radiation λ = 0.56083 Å μ = 0.12 mm−1 T = 293 K 0.50 × 0.40 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer 4505 measured reflections 4296 independent reflections 2134 reflections with I > 2σ(I) R int = 0.029 2 standard reflections every 120 min intensity decay: 6%

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.127 S = 0.94 4296 reflections 154 parameters H-atom parameters constrained Δρmax = 0.44 e Å−3 Δρmin = −0.27 e Å−3 Absolute structure: Flack (1983 ▶), 812 Friedel pairs Flack parameter: −0.1 (2) Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1996 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and DIAMOND (Brandenburg & Putz, 2005 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810030813/dn2592sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810030813/dn2592Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H15N2+·H2PO4F(000) = 552
Mr = 260.23Dx = 1.386 Mg m3
Orthorhombic, P212121Ag Kα radiation, λ = 0.56083 Å
Hall symbol: P 2ac 2abCell parameters from 25 reflections
a = 6.175 (3) Åθ = 9–11°
b = 8.276 (3) ŵ = 0.12 mm1
c = 24.408 (9) ÅT = 293 K
V = 1247.3 (9) Å3Prism, colourless
Z = 40.50 × 0.40 × 0.10 mm
Enraf–Nonius CAD-4 diffractometerRint = 0.029
Radiation source: Enraf Nonius FR590θmax = 28.0°, θmin = 2.6°
graphiteh = 0→10
non–profiled ω scansk = 0→13
4505 measured reflectionsl = −10→40
4296 independent reflections2 standard reflections every 120 min
2134 reflections with I > 2σ(I) intensity decay: 6%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.056H-atom parameters constrained
wR(F2) = 0.127w = 1/[σ2(Fo2) + (0.0539P)2] where P = (Fo2 + 2Fc2)/3
S = 0.94(Δ/σ)max < 0.001
4296 reflectionsΔρmax = 0.44 e Å3
154 parametersΔρmin = −0.27 e Å3
0 restraintsAbsolute structure: Flack (1983), 812 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: −0.1 (2)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.9900 (5)0.0405 (3)0.07656 (13)0.0538 (8)
H1C1.0834−0.04970.08580.065*
H1D0.91180.01280.04340.065*
C20.8320 (5)0.0668 (4)0.12197 (12)0.0540 (8)
H2A0.72620.14680.11070.065*
H2B0.7557−0.03330.12930.065*
C31.0653 (6)0.2676 (3)0.16155 (12)0.0529 (7)
H3A1.13870.29960.19500.063*
H3B0.96970.35490.15070.063*
C41.2291 (5)0.2386 (4)0.11736 (13)0.0525 (8)
H4A1.30890.33750.11050.063*
H4B1.33130.15700.12940.063*
C50.8136 (4)0.1192 (3)0.21995 (12)0.0413 (6)
C60.6143 (5)0.0404 (4)0.22358 (14)0.0516 (8)
H60.5592−0.01170.19290.062*
C70.4984 (6)0.0382 (4)0.27123 (16)0.0647 (10)
H70.3657−0.01490.27210.078*
C80.5724 (7)0.1121 (4)0.31782 (16)0.0705 (10)
H80.49070.11160.34980.085*
C90.7710 (8)0.1870 (5)0.31582 (15)0.0769 (12)
H90.82610.23520.34730.092*
C100.8895 (6)0.1921 (4)0.26826 (13)0.0588 (8)
H101.02250.24480.26800.071*
N11.1243 (4)0.1849 (3)0.06624 (10)0.0396 (5)
H1A1.22620.16150.04110.047*
H1B1.04090.26490.05290.047*
N20.9374 (4)0.1210 (2)0.17176 (9)0.0406 (5)
P10.95373 (11)0.58755 (7)0.02154 (3)0.03303 (15)
O11.1831 (3)0.5806 (2)0.04795 (8)0.0458 (5)
H11.24220.66880.04480.069*
O20.8135 (3)0.6752 (3)0.06613 (8)0.0484 (5)
H20.69120.69060.05420.073*
O30.8824 (3)0.4159 (2)0.01488 (9)0.0521 (5)
O40.9544 (3)0.6870 (2)−0.03041 (7)0.0418 (4)
U11U22U33U12U13U23
C10.069 (2)0.0385 (12)0.0542 (18)−0.0065 (13)0.0118 (16)−0.0106 (12)
C20.0533 (16)0.0602 (18)0.0485 (16)−0.0178 (16)0.0073 (14)−0.0121 (15)
C30.0628 (17)0.0529 (15)0.0428 (15)−0.0225 (17)0.0014 (16)−0.0069 (13)
C40.0454 (15)0.0566 (17)0.0555 (18)−0.0096 (14)−0.0052 (15)0.0093 (15)
C50.0455 (14)0.0342 (13)0.0441 (15)0.0061 (10)0.0024 (13)0.0034 (11)
C60.0549 (17)0.0519 (17)0.0480 (17)−0.0019 (13)0.0034 (15)0.0042 (14)
C70.061 (2)0.066 (2)0.067 (2)0.0014 (15)0.0155 (19)0.0143 (18)
C80.091 (3)0.0611 (19)0.059 (2)0.017 (2)0.028 (2)0.0121 (18)
C90.123 (4)0.062 (2)0.0452 (19)−0.005 (3)0.008 (2)−0.0109 (17)
C100.075 (2)0.0543 (16)0.0471 (17)−0.0141 (16)0.0025 (17)−0.0121 (15)
N10.0432 (11)0.0319 (9)0.0436 (12)0.0102 (9)0.0062 (11)0.0050 (10)
N20.0445 (11)0.0364 (10)0.0410 (12)−0.0047 (10)0.0008 (11)−0.0046 (9)
P10.0347 (3)0.0253 (2)0.0391 (3)−0.0019 (3)−0.0063 (3)0.0030 (3)
O10.0424 (9)0.0369 (9)0.0582 (12)−0.0069 (9)−0.0132 (9)0.0143 (9)
O20.0507 (11)0.0541 (11)0.0403 (10)0.0097 (10)0.0004 (9)0.0037 (9)
O30.0599 (10)0.0271 (7)0.0693 (13)−0.0028 (8)−0.0286 (11)0.0008 (10)
O40.0392 (8)0.0443 (8)0.0418 (10)0.0089 (9)0.0007 (9)0.0084 (8)
C1—N11.476 (4)C6—C71.366 (5)
C1—C21.492 (4)C6—H60.9300
C1—H1C0.9700C7—C81.370 (6)
C1—H1D0.9700C7—H70.9300
C2—N21.450 (4)C8—C91.375 (6)
C2—H2A0.9700C8—H80.9300
C2—H2B0.9700C9—C101.373 (5)
C3—N21.469 (3)C9—H90.9300
C3—C41.498 (5)C10—H100.9300
C3—H3A0.9700N1—H1A0.9000
C3—H3B0.9700N1—H1B0.8998
C4—N11.474 (4)P1—O31.496 (2)
C4—H4A0.9700P1—O41.5114 (19)
C4—H4B0.9700P1—O11.5572 (19)
C5—C61.395 (4)P1—O21.569 (2)
C5—N21.403 (4)O1—H10.8197
C5—C101.405 (4)O2—H20.8194
N1—C1—C2112.1 (2)C6—C7—C8121.7 (3)
N1—C1—H1C109.2C6—C7—H7119.1
C2—C1—H1C109.2C8—C7—H7119.1
N1—C1—H1D109.2C7—C8—C9118.0 (3)
C2—C1—H1D109.2C7—C8—H8121.0
H1C—C1—H1D107.9C9—C8—H8121.0
N2—C2—C1112.0 (2)C10—C9—C8121.3 (4)
N2—C2—H2A109.2C10—C9—H9119.4
C1—C2—H2A109.2C8—C9—H9119.4
N2—C2—H2B109.2C9—C10—C5121.2 (3)
C1—C2—H2B109.2C9—C10—H10119.4
H2A—C2—H2B107.9C5—C10—H10119.4
N2—C3—C4110.7 (2)C4—N1—C1110.3 (2)
N2—C3—H3A109.5C4—N1—H1A109.6
C4—C3—H3A109.5C1—N1—H1A109.6
N2—C3—H3B109.5C4—N1—H1B109.6
C4—C3—H3B109.5C1—N1—H1B109.6
H3A—C3—H3B108.1H1A—N1—H1B108.2
N1—C4—C3111.2 (2)C5—N2—C2117.0 (2)
N1—C4—H4A109.4C5—N2—C3116.4 (2)
C3—C4—H4A109.4C2—N2—C3110.8 (2)
N1—C4—H4B109.4O3—P1—O4115.26 (11)
C3—C4—H4B109.4O3—P1—O1106.11 (11)
H4A—C4—H4B108.0O4—P1—O1111.40 (11)
C6—C5—N2122.6 (3)O3—P1—O2110.60 (12)
C6—C5—C10116.2 (3)O4—P1—O2109.38 (11)
N2—C5—C10121.1 (3)O1—P1—O2103.41 (12)
C7—C6—C5121.5 (3)P1—O1—H1109.5
C7—C6—H6119.2P1—O2—H2109.5
C5—C6—H6119.2
D—H···AD—HH···AD···AD—H···A
O1—H1···O4i0.821.812.587 (3)158
O2—H2···O4ii0.821.872.642 (3)156
N1—H1B···O30.901.842.731 (3)171
N1—H1A···O3iii0.901.792.675 (3)167
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1⋯O4i0.821.812.587 (3)158
O2—H2⋯O4ii0.821.872.642 (3)156
N1—H1B⋯O30.901.842.731 (3)171
N1—H1A⋯O3iii0.901.792.675 (3)167

Symmetry codes: (i) ; (ii) ; (iii) .

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