Literature DB >> 21588501

(Acridine-κN)(dimethyl sulfoxide-κS)diiodidoplatinum(II).

Kwang Ha1.   

Abstract

In the title complex, [PtI(2)(C(13)H(9)N)(C(2)H(6)OS)], the Pt(II) atom is four-coordinated in an essentially square-planar environment defined by the N atom of the acridine ligand, the S atom of dimethyl sulfoxide, and two iodide ions. The dihedral angle between the nearly planar PtI(2)NS unit [maximum deviation = 0.083 (2) Å] and the acridine ligand [maximum deviation = 0.038 (6) Å] is 89.29 (7)°. In the crystal structure, the complex mol-ecules are arranged in a V-shaped packing pattern along the c axis and linked by inter-molecular C-H⋯O contacts into supra-molecular chains. There are also several inter-molecular π-π inter-actions between the six-membered rings, with a shortest ring centroid-centroid distance of 3.804 (5) Å.

Entities:  

Year:  2010        PMID: 21588501      PMCID: PMC3007941          DOI: 10.1107/S1600536810031387

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the crystal structures of [PtCl2(acr)2] (acr = n class="Chemical">acridine) and [PtCl(pic)(DMSO)] (pic = pyridine-2-carboxyl­ate, DMSO = dimethyl sulfoxide), see: Ha (2010a ▶,b ▶).

Experimental

Crystal data

[PtI2(C13H9N)(C2H6OS)] M = 706.23 Monoclinic, a = 8.4800 (6) Å b = 23.8181 (17) Å c = 9.9036 (7) Å β = 114.492 (1)° V = 1820.3 (2) Å3 Z = 4 Mo Kα radiation μ = 11.21 mm−1 T = 200 K 0.20 × 0.19 × 0.06 mm

Data collection

Bruker SMART 1000 CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2000 ▶) T min = 0.468, T max = 1.000 11217 measured reflections 3573 independent reflections 2809 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.083 S = 1.03 3573 reflections 192 parameters H-atom parameters constrained Δρmax = 2.10 e Å−3 Δρmin = −1.16 e Å−3 Data collection: SMART (Bruker, 2000 ▶); cell refinement: SAINT (Bruker, 2000 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810031387/tk2697sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810031387/tk2697Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[PtI2(C13H9N)(C2H6OS)]F(000) = 1280
Mr = 706.23Dx = 2.577 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 5088 reflections
a = 8.4800 (6) Åθ = 2.6–26.0°
b = 23.8181 (17) ŵ = 11.21 mm1
c = 9.9036 (7) ÅT = 200 K
β = 114.492 (1)°Block, yellow
V = 1820.3 (2) Å30.20 × 0.19 × 0.06 mm
Z = 4
Bruker SMART 1000 CCD diffractometer3573 independent reflections
Radiation source: fine-focus sealed tube2809 reflections with I > 2σ(I)
graphiteRint = 0.051
φ and ω scansθmax = 26.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2000)h = −10→7
Tmin = 0.468, Tmax = 1.000k = −28→29
11217 measured reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.035Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.083H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0324P)2] where P = (Fo2 + 2Fc2)/3
3573 reflections(Δ/σ)max < 0.001
192 parametersΔρmax = 2.10 e Å3
0 restraintsΔρmin = −1.16 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Pt10.22004 (4)0.152591 (13)0.21512 (3)0.02504 (11)
I10.44358 (8)0.19167 (3)0.12073 (8)0.04961 (19)
I20.02342 (7)0.10938 (2)0.33373 (6)0.03254 (15)
S10.0408 (2)0.22130 (9)0.0922 (2)0.0282 (4)
O1−0.0003 (7)0.2220 (3)−0.0675 (6)0.0410 (15)
N10.3965 (8)0.0876 (3)0.3075 (7)0.0282 (15)
C10.5309 (9)0.0945 (3)0.4428 (8)0.0247 (17)
C20.5382 (11)0.1408 (4)0.5345 (9)0.036 (2)
H20.44740.16780.50200.043*
C30.6736 (11)0.1471 (4)0.6683 (10)0.039 (2)
H30.67540.17800.72950.047*
C40.8130 (11)0.1081 (4)0.7186 (10)0.046 (3)
H40.90810.11360.81180.056*
C50.8103 (10)0.0635 (4)0.6344 (10)0.042 (2)
H50.90440.03780.66860.050*
C60.6695 (10)0.0543 (4)0.4955 (9)0.034 (2)
C70.6615 (10)0.0093 (4)0.4048 (10)0.039 (2)
H70.7548−0.01670.43670.047*
C80.5221 (10)0.0007 (3)0.2686 (9)0.0313 (19)
C90.5072 (11)−0.0455 (4)0.1740 (11)0.042 (2)
H90.5958−0.07320.20450.050*
C100.3711 (12)−0.0513 (4)0.0421 (10)0.045 (2)
H100.3649−0.0821−0.02070.054*
C110.2376 (11)−0.0108 (4)−0.0020 (9)0.037 (2)
H110.1403−0.0152−0.09430.044*
C120.2453 (10)0.0344 (4)0.0852 (9)0.035 (2)
H120.15380.06100.05290.042*
C130.3888 (10)0.0418 (3)0.2234 (9)0.0296 (18)
C140.1268 (10)0.2874 (4)0.1699 (9)0.036 (2)
H14A0.23940.29280.16610.055*
H14B0.14150.28870.27340.055*
H14C0.04710.31720.11340.055*
C15−0.1582 (10)0.2226 (4)0.1040 (9)0.038 (2)
H15A−0.22750.25400.04530.057*
H15B−0.13950.22720.20790.057*
H15C−0.21970.18720.06550.057*
U11U22U33U12U13U23
Pt10.02442 (17)0.0238 (2)0.02705 (18)0.00111 (12)0.01078 (13)0.00131 (13)
I10.0400 (4)0.0479 (4)0.0741 (5)0.0065 (3)0.0368 (3)0.0194 (3)
I20.0375 (3)0.0295 (3)0.0353 (3)−0.0020 (2)0.0198 (2)0.0003 (2)
S10.0316 (11)0.0290 (12)0.0239 (10)0.0046 (8)0.0113 (8)0.0022 (8)
O10.050 (4)0.052 (4)0.020 (3)0.011 (3)0.014 (3)0.005 (3)
N10.028 (4)0.019 (4)0.039 (4)0.000 (3)0.015 (3)0.003 (3)
C10.017 (4)0.021 (5)0.029 (4)0.002 (3)0.002 (3)0.009 (3)
C20.039 (5)0.028 (5)0.035 (5)0.000 (4)0.009 (4)0.006 (4)
C30.042 (5)0.034 (6)0.032 (5)−0.011 (4)0.007 (4)0.004 (4)
C40.035 (5)0.054 (7)0.033 (5)−0.012 (5)−0.003 (4)0.013 (5)
C50.027 (5)0.047 (7)0.040 (5)−0.001 (4)0.002 (4)0.013 (5)
C60.031 (5)0.037 (6)0.037 (5)−0.005 (4)0.016 (4)0.008 (4)
C70.034 (5)0.033 (6)0.053 (6)0.009 (4)0.020 (4)0.016 (4)
C80.028 (4)0.021 (5)0.048 (5)0.000 (3)0.018 (4)0.008 (4)
C90.047 (6)0.028 (6)0.062 (6)0.004 (4)0.034 (5)0.006 (5)
C100.070 (7)0.027 (6)0.051 (6)−0.008 (5)0.037 (5)−0.013 (4)
C110.036 (5)0.037 (6)0.033 (5)−0.003 (4)0.011 (4)−0.002 (4)
C120.035 (5)0.028 (5)0.042 (5)−0.001 (4)0.015 (4)0.001 (4)
C130.035 (5)0.024 (5)0.035 (5)0.007 (4)0.020 (4)0.006 (4)
C140.042 (5)0.029 (6)0.035 (5)0.002 (4)0.013 (4)0.003 (4)
C150.031 (5)0.034 (6)0.043 (5)0.006 (4)0.009 (4)0.006 (4)
Pt1—N12.083 (6)C6—C71.381 (12)
Pt1—S12.222 (2)C7—C81.392 (11)
Pt1—I12.6082 (6)C7—H70.9500
Pt1—I22.6160 (6)C8—C91.417 (12)
S1—O11.472 (5)C8—C131.420 (10)
S1—C151.740 (8)C9—C101.344 (13)
S1—C141.771 (9)C9—H90.9500
N1—C131.358 (10)C10—C111.410 (12)
N1—C11.362 (9)C10—H100.9500
C1—C21.414 (11)C11—C121.364 (11)
C1—C61.435 (11)C11—H110.9500
C2—C31.355 (11)C12—C131.415 (11)
C2—H20.9500C12—H120.9500
C3—C41.420 (12)C14—H14A0.9800
C3—H30.9500C14—H14B0.9800
C4—C51.345 (13)C14—H14C0.9800
C4—H40.9500C15—H15A0.9800
C5—C61.416 (11)C15—H15B0.9800
C5—H50.9500C15—H15C0.9800
N1—Pt1—S1172.71 (17)C6—C7—C8122.5 (8)
N1—Pt1—I185.75 (16)C6—C7—H7118.7
S1—Pt1—I188.55 (5)C8—C7—H7118.7
N1—Pt1—I289.21 (16)C7—C8—C9124.3 (8)
S1—Pt1—I296.73 (5)C7—C8—C13116.7 (8)
I1—Pt1—I2174.03 (2)C9—C8—C13119.0 (8)
O1—S1—C15105.5 (4)C10—C9—C8121.8 (8)
O1—S1—C14109.1 (4)C10—C9—H9119.1
C15—S1—C14101.0 (4)C8—C9—H9119.1
O1—S1—Pt1113.6 (3)C9—C10—C11119.1 (8)
C15—S1—Pt1116.0 (3)C9—C10—H10120.4
C14—S1—Pt1110.6 (3)C11—C10—H10120.4
C13—N1—C1120.5 (7)C12—C11—C10121.4 (8)
C13—N1—Pt1119.0 (5)C12—C11—H11119.3
C1—N1—Pt1119.9 (5)C10—C11—H11119.3
N1—C1—C2121.4 (7)C11—C12—C13120.4 (8)
N1—C1—C6120.2 (7)C11—C12—H12119.8
C2—C1—C6118.4 (7)C13—C12—H12119.8
C3—C2—C1120.5 (8)N1—C13—C12119.8 (7)
C3—C2—H2119.7N1—C13—C8122.0 (7)
C1—C2—H2119.7C12—C13—C8118.2 (8)
C2—C3—C4121.0 (9)S1—C14—H14A109.5
C2—C3—H3119.5S1—C14—H14B109.5
C4—C3—H3119.5H14A—C14—H14B109.5
C5—C4—C3120.0 (8)S1—C14—H14C109.5
C5—C4—H4120.0H14A—C14—H14C109.5
C3—C4—H4120.0H14B—C14—H14C109.5
C4—C5—C6121.1 (8)S1—C15—H15A109.5
C4—C5—H5119.5S1—C15—H15B109.5
C6—C5—H5119.5H15A—C15—H15B109.5
C7—C6—C5123.1 (8)S1—C15—H15C109.5
C7—C6—C1117.9 (7)H15A—C15—H15C109.5
C5—C6—C1118.9 (8)H15B—C15—H15C109.5
I1—Pt1—S1—O157.2 (3)C2—C1—C6—C7−179.7 (7)
I2—Pt1—S1—O1−125.6 (3)N1—C1—C6—C5177.9 (7)
I1—Pt1—S1—C15179.8 (3)C2—C1—C6—C5−2.1 (11)
I2—Pt1—S1—C15−3.0 (3)C5—C6—C7—C8179.9 (8)
I1—Pt1—S1—C14−65.9 (3)C1—C6—C7—C8−2.6 (12)
I2—Pt1—S1—C14111.3 (3)C6—C7—C8—C9−178.6 (7)
I1—Pt1—N1—C13−87.4 (5)C6—C7—C8—C132.2 (12)
I2—Pt1—N1—C1395.8 (5)C7—C8—C9—C10−178.7 (8)
I1—Pt1—N1—C184.1 (5)C13—C8—C9—C100.6 (12)
I2—Pt1—N1—C1−92.8 (5)C8—C9—C10—C11−1.4 (13)
C13—N1—C1—C2−177.6 (7)C9—C10—C11—C121.2 (13)
Pt1—N1—C1—C211.0 (9)C10—C11—C12—C13−0.1 (13)
C13—N1—C1—C62.4 (11)C1—N1—C13—C12178.0 (7)
Pt1—N1—C1—C6−169.0 (5)Pt1—N1—C13—C12−10.6 (9)
N1—C1—C2—C3−179.6 (7)C1—N1—C13—C8−2.9 (11)
C6—C1—C2—C30.4 (12)Pt1—N1—C13—C8168.6 (6)
C1—C2—C3—C41.3 (13)C11—C12—C13—N1178.5 (7)
C2—C3—C4—C5−1.3 (14)C11—C12—C13—C8−0.7 (12)
C3—C4—C5—C6−0.4 (13)C7—C8—C13—N10.6 (11)
C4—C5—C6—C7179.6 (8)C9—C8—C13—N1−178.7 (7)
C4—C5—C6—C12.1 (12)C7—C8—C13—C12179.8 (7)
N1—C1—C6—C70.3 (11)C9—C8—C13—C120.5 (11)
D—H···AD—HH···AD···AD—H···A
C14—H14B···O1i0.982.363.209 (10)145.
C15—H15B···O1i0.982.373.241 (10)147.
Table 1

Selected bond lengths (Å)

Pt1—N12.083 (6)
Pt1—S12.222 (2)
Pt1—I12.6082 (6)
Pt1—I22.6160 (6)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C14—H14B⋯O1i0.982.363.209 (10)145
C15—H15B⋯O1i0.982.373.241 (10)147

Symmetry code: (i) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  trans-Chlorido(dimethyl sulfoxide-κS)(pyridine-2-carboxyl-ato-κN,O)platinum(II).

Authors:  Kwang Ha
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-13

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  3 in total
  1 in total

1.  Supra-molecular inter-actions in a 1:1 co-crystal of acridine and 3-chloro-thio-phene-2-carb-oxy-lic acid.

Authors:  Olakkandiyil Prajina; Packianathan Thomas Muthiah; Franc Perdih
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-04-08
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.