Literature DB >> 21588454

Ethyl (2,5-dioxo-1-phenyl-2,3-dihydro-1H,5H-1-benzofuro[3,2-d]imidazo[1,2-a]pyrimidin-3-yl)acetate.

Shou-Heng Deng1, Feng-Jun Cao, Xiao-Jun Cai, Fang Li, Ping Chen.   

Abstract

In the title compound, C(22)H(17)N(3)O(5), synthesized via the aza-Wittig reaction of ethyl 3-(phenyl-imino-methyl-ene-amino)-benzofuran-2-carboxyl-ate, benzene isocyanate and diethyl 2-amino-succinate, the imidazo[1,2-a]benzo[4,5]furo[2,3-d]pyrim-idine ring system is essentially planar (r.m.s. deviation for all 16 non-H atoms = 0.020 Å). The phenyl ring is twisted with respect to this ring system, making a dihedral angle of 54.23 (4)°. The crystal packing is stabilized by weak inter-molecular C-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21588454      PMCID: PMC3007370          DOI: 10.1107/S1600536810029521

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound may be used as a precursor for obtaining bioactive mol­ecules, see: Bellarosa et al. (1996 ▶). For the biological activity of benzofuropyrimidine derivatives, see: Moneam et al. (2004 ▶); Bodke et al. (2003 ▶); Palacios et al. (2007 ▶); Duval et al. (2005 ▶); Teimouria et al. (2006 ▶). For the crystal structures of other fused pyrimidinone derivatives, see: Hu et al. (2005 ▶, 2006 ▶, 2007 ▶, 2008 ▶).

Experimental

Crystal data

C22H17N3O5 M = 403.39 Triclinic, a = 8.5418 (12) Å b = 8.6553 (12) Å c = 14.519 (2) Å α = 86.642 (2)° β = 82.873 (2)° γ = 62.619 (2)° V = 945.8 (2) Å3 Z = 2 Mo Kα radiation μ = 0.10 mm−1 T = 292 K 0.30 × 0.20 × 0.10 mm

Data collection

Bruker SMART 4K CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2003 ▶) T min = 0.970, T max = 0.990 5574 measured reflections 3663 independent reflections 2844 reflections with I > 2σ(I) R int = 0.084

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.129 S = 1.06 3663 reflections 272 parameters H-atom parameters constrained Δρmax = 0.25 e Å−3 Δρmin = −0.35 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 2001 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810029521/bt5306sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029521/bt5306Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C22H17N3O5Z = 2
Mr = 403.39F(000) = 420
Triclinic, P1Dx = 1.416 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.5418 (12) ÅCell parameters from 2477 reflections
b = 8.6553 (12) Åθ = 6.0–25.0°
c = 14.519 (2) ŵ = 0.10 mm1
α = 86.642 (2)°T = 292 K
β = 82.873 (2)°Block, colourless
γ = 62.619 (2)°0.30 × 0.20 × 0.10 mm
V = 945.8 (2) Å3
Bruker SMART 4K CCD area-detector diffractometer3663 independent reflections
Radiation source: fine-focus sealed tube2844 reflections with I > 2σ(I)
graphiteRint = 0.084
φ and ω scansθmax = 26.0°, θmin = 2.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 2003)h = −10→10
Tmin = 0.970, Tmax = 0.990k = −5→10
5574 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.129H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0729P)2 + 0.002P] where P = (Fo2 + 2Fc2)/3
3663 reflections(Δ/σ)max = 0.003
272 parametersΔρmax = 0.25 e Å3
0 restraintsΔρmin = −0.35 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8363 (2)0.04672 (19)0.37332 (10)0.0385 (4)
C20.9489 (2)0.0189 (2)0.29234 (11)0.0477 (4)
H20.92100.09870.24370.057*
C31.1056 (2)−0.1346 (2)0.28769 (11)0.0492 (4)
H31.1857−0.15870.23450.059*
C41.1467 (2)−0.2539 (2)0.36064 (11)0.0461 (4)
H41.2535−0.35560.35510.055*
C51.0323 (2)−0.2243 (2)0.44088 (11)0.0414 (4)
H51.0602−0.30450.48930.050*
C60.8732 (2)−0.07023 (19)0.44725 (10)0.0361 (3)
C70.72423 (19)0.00914 (18)0.51685 (10)0.0352 (3)
C80.6108 (2)0.16444 (19)0.48043 (10)0.0382 (4)
C90.4462 (2)0.2830 (2)0.52864 (11)0.0422 (4)
C100.5479 (2)0.05584 (19)0.64773 (10)0.0366 (4)
C110.5896 (2)−0.1152 (2)0.79340 (10)0.0411 (4)
C120.6649 (2)−0.2842 (2)0.76226 (12)0.0493 (4)
H120.6413−0.30920.70560.059*
C130.7760 (2)−0.4161 (2)0.81653 (13)0.0547 (5)
H130.8279−0.53070.79620.066*
C140.8108 (2)−0.3794 (3)0.90068 (13)0.0580 (5)
H140.8876−0.46870.93620.070*
C150.7316 (2)−0.2107 (3)0.93184 (13)0.0609 (5)
H150.7522−0.18640.98940.073*
C160.6215 (2)−0.0769 (2)0.87790 (11)0.0530 (4)
H160.56960.03760.89840.064*
C170.3210 (2)0.1644 (2)0.76449 (11)0.0430 (4)
C180.2735 (2)0.2986 (2)0.68624 (10)0.0422 (4)
H180.16970.30530.66060.051*
C190.2319 (2)0.4798 (2)0.71761 (11)0.0473 (4)
H19A0.25480.54300.66460.057*
H19B0.10680.54190.73970.057*
C200.3383 (2)0.4779 (2)0.79307 (11)0.0424 (4)
C210.3358 (2)0.6322 (2)0.92299 (12)0.0550 (5)
H21A0.44540.63720.90120.066*
H21B0.36340.53080.96260.066*
C220.2109 (3)0.7929 (3)0.97571 (15)0.0814 (7)
H22A0.19000.89290.93710.122*
H22B0.26140.80001.02980.122*
H22C0.10070.78930.99430.122*
N10.69428 (17)−0.05275 (16)0.60320 (8)0.0381 (3)
N20.42881 (16)0.21602 (16)0.61779 (8)0.0392 (3)
N30.48245 (17)0.02592 (16)0.73590 (8)0.0413 (3)
O10.67400 (14)0.19234 (13)0.39205 (7)0.0442 (3)
O20.33196 (16)0.42088 (15)0.50277 (8)0.0599 (4)
O30.23141 (16)0.17923 (16)0.83798 (8)0.0561 (3)
O40.48112 (15)0.36241 (16)0.80601 (10)0.0646 (4)
O50.25135 (14)0.62047 (14)0.84498 (8)0.0501 (3)
U11U22U33U12U13U23
C10.0384 (8)0.0302 (8)0.0392 (8)−0.0076 (7)−0.0086 (6)−0.0031 (6)
C20.0559 (10)0.0411 (9)0.0391 (9)−0.0164 (8)−0.0047 (7)0.0019 (7)
C30.0470 (10)0.0478 (10)0.0451 (9)−0.0156 (8)0.0005 (8)−0.0065 (8)
C40.0367 (8)0.0387 (9)0.0510 (10)−0.0056 (7)−0.0073 (7)−0.0087 (8)
C50.0429 (9)0.0336 (8)0.0421 (9)−0.0105 (7)−0.0132 (7)−0.0004 (7)
C60.0400 (8)0.0310 (8)0.0349 (8)−0.0122 (7)−0.0112 (6)−0.0021 (6)
C70.0397 (8)0.0298 (8)0.0336 (8)−0.0118 (7)−0.0115 (6)−0.0002 (6)
C80.0434 (9)0.0325 (8)0.0328 (8)−0.0113 (7)−0.0088 (6)0.0006 (6)
C90.0455 (9)0.0336 (8)0.0394 (9)−0.0096 (7)−0.0123 (7)0.0011 (7)
C100.0425 (8)0.0290 (8)0.0364 (8)−0.0131 (7)−0.0097 (6)−0.0016 (6)
C110.0463 (9)0.0405 (9)0.0369 (8)−0.0206 (8)−0.0052 (7)0.0044 (7)
C120.0645 (11)0.0440 (10)0.0416 (9)−0.0260 (9)−0.0097 (8)0.0034 (7)
C130.0581 (11)0.0401 (10)0.0590 (11)−0.0171 (9)−0.0069 (9)0.0066 (8)
C140.0498 (10)0.0613 (12)0.0549 (11)−0.0191 (9)−0.0122 (8)0.0176 (9)
C150.0632 (12)0.0756 (14)0.0420 (10)−0.0287 (11)−0.0136 (8)0.0033 (9)
C160.0632 (11)0.0542 (11)0.0425 (9)−0.0266 (9)−0.0082 (8)−0.0031 (8)
C170.0439 (9)0.0425 (9)0.0425 (9)−0.0188 (8)−0.0050 (7)−0.0072 (7)
C180.0379 (8)0.0406 (9)0.0421 (9)−0.0119 (7)−0.0051 (7)−0.0076 (7)
C190.0458 (9)0.0385 (9)0.0464 (9)−0.0088 (8)−0.0058 (7)−0.0060 (7)
C200.0364 (9)0.0330 (8)0.0502 (9)−0.0098 (7)−0.0004 (7)−0.0049 (7)
C210.0577 (11)0.0603 (12)0.0495 (10)−0.0277 (10)−0.0094 (8)−0.0048 (9)
C220.0964 (17)0.0683 (14)0.0747 (15)−0.0303 (13)−0.0108 (12)−0.0264 (12)
N10.0424 (7)0.0304 (7)0.0353 (7)−0.0105 (6)−0.0085 (6)0.0006 (5)
N20.0403 (7)0.0319 (7)0.0368 (7)−0.0083 (6)−0.0064 (6)−0.0020 (5)
N30.0468 (8)0.0347 (7)0.0371 (7)−0.0143 (6)−0.0036 (6)−0.0006 (5)
O10.0457 (6)0.0329 (6)0.0374 (6)−0.0038 (5)−0.0062 (5)0.0032 (5)
O20.0555 (7)0.0413 (7)0.0512 (7)0.0054 (6)−0.0110 (6)0.0065 (6)
O30.0540 (7)0.0614 (8)0.0462 (7)−0.0224 (6)0.0045 (6)−0.0055 (6)
O40.0422 (7)0.0484 (8)0.0882 (10)−0.0036 (6)−0.0173 (6)−0.0173 (7)
O50.0492 (7)0.0386 (7)0.0494 (7)−0.0065 (5)−0.0104 (5)−0.0098 (5)
C1—C21.380 (2)C13—C141.380 (2)
C1—O11.3871 (17)C13—H130.9300
C1—C61.393 (2)C14—C151.374 (3)
C2—C31.384 (2)C14—H140.9300
C2—H20.9300C15—C161.383 (2)
C3—C41.394 (2)C15—H150.9300
C3—H30.9300C16—H160.9300
C4—C51.378 (2)C17—O31.2096 (18)
C4—H40.9300C17—N31.381 (2)
C5—C61.396 (2)C17—C181.527 (2)
C5—H50.9300C18—N21.4638 (18)
C6—C71.439 (2)C18—C191.524 (2)
C7—C81.368 (2)C18—H180.9800
C7—N11.3756 (18)C19—C201.502 (2)
C8—O11.3811 (18)C19—H19A0.9700
C8—C91.426 (2)C19—H19B0.9700
C9—O21.2183 (18)C20—O41.1984 (18)
C9—N21.406 (2)C20—O51.3303 (18)
C10—N11.2863 (19)C21—O51.4482 (19)
C10—N21.3738 (19)C21—C221.488 (2)
C10—N31.3910 (19)C21—H21A0.9700
C11—C121.378 (2)C21—H21B0.9700
C11—C161.380 (2)C22—H22A0.9600
C11—N31.438 (2)C22—H22B0.9600
C12—C131.381 (2)C22—H22C0.9600
C12—H120.9300
C2—C1—O1125.12 (14)C16—C15—H15119.9
C2—C1—C6123.52 (15)C11—C16—C15119.29 (17)
O1—C1—C6111.37 (13)C11—C16—H16120.4
C1—C2—C3116.09 (16)C15—C16—H16120.4
C1—C2—H2122.0O3—C17—N3127.00 (16)
C3—C2—H2122.0O3—C17—C18125.28 (15)
C2—C3—C4121.75 (15)N3—C17—C18107.72 (13)
C2—C3—H3119.1N2—C18—C19115.56 (13)
C4—C3—H3119.1N2—C18—C17101.49 (12)
C5—C4—C3121.36 (15)C19—C18—C17113.30 (12)
C5—C4—H4119.3N2—C18—H18108.7
C3—C4—H4119.3C19—C18—H18108.7
C4—C5—C6117.96 (15)C17—C18—H18108.7
C4—C5—H5121.0C20—C19—C18113.46 (13)
C6—C5—H5121.0C20—C19—H19A108.9
C1—C6—C5119.32 (14)C18—C19—H19A108.9
C1—C6—C7105.44 (13)C20—C19—H19B108.9
C5—C6—C7135.23 (14)C18—C19—H19B108.9
C8—C7—N1124.78 (14)H19A—C19—H19B107.7
C8—C7—C6106.21 (13)O4—C20—O5124.28 (15)
N1—C7—C6129.01 (13)O4—C20—C19124.77 (14)
C7—C8—O1112.30 (13)O5—C20—C19110.94 (13)
C7—C8—C9123.50 (14)O5—C21—C22107.98 (15)
O1—C8—C9124.20 (13)O5—C21—H21A110.1
O2—C9—N2121.73 (15)C22—C21—H21A110.1
O2—C9—C8129.66 (16)O5—C21—H21B110.1
N2—C9—C8108.61 (13)C22—C21—H21B110.1
N1—C10—N2127.32 (14)H21A—C21—H21B108.4
N1—C10—N3124.27 (14)C21—C22—H22A109.5
N2—C10—N3108.40 (13)C21—C22—H22B109.5
C12—C11—C16121.05 (16)H22A—C22—H22B109.5
C12—C11—N3120.22 (13)C21—C22—H22C109.5
C16—C11—N3118.67 (15)H22A—C22—H22C109.5
C11—C12—C13118.91 (15)H22B—C22—H22C109.5
C11—C12—H12120.5C10—N1—C7111.84 (13)
C13—C12—H12120.5C10—N2—C9123.79 (13)
C14—C13—C12120.62 (17)C10—N2—C18111.50 (12)
C14—C13—H13119.7C9—N2—C18124.39 (13)
C12—C13—H13119.7C17—N3—C10110.86 (13)
C15—C14—C13119.84 (17)C17—N3—C11125.99 (13)
C15—C14—H14120.1C10—N3—C11122.06 (13)
C13—C14—H14120.1C8—O1—C1104.69 (11)
C14—C15—C16120.26 (17)C20—O5—C21116.76 (13)
C14—C15—H15119.9
O1—C1—C2—C3179.50 (14)C18—C19—C20—O426.2 (2)
C6—C1—C2—C3−0.4 (2)C18—C19—C20—O5−152.67 (14)
C1—C2—C3—C40.1 (2)N2—C10—N1—C70.0 (2)
C2—C3—C4—C50.1 (3)N3—C10—N1—C7178.67 (13)
C3—C4—C5—C6−0.2 (2)C8—C7—N1—C10−2.0 (2)
C2—C1—C6—C50.4 (2)C6—C7—N1—C10178.43 (14)
O1—C1—C6—C5−179.53 (13)N1—C10—N2—C93.6 (2)
C2—C1—C6—C7179.39 (14)N3—C10—N2—C9−175.22 (13)
O1—C1—C6—C7−0.51 (16)N1—C10—N2—C18177.39 (14)
C4—C5—C6—C1−0.1 (2)N3—C10—N2—C18−1.42 (16)
C4—C5—C6—C7−178.74 (15)O2—C9—N2—C10175.24 (15)
C1—C6—C7—C80.13 (16)C8—C9—N2—C10−4.5 (2)
C5—C6—C7—C8178.92 (17)O2—C9—N2—C182.2 (2)
C1—C6—C7—N1179.78 (14)C8—C9—N2—C18−177.54 (13)
C5—C6—C7—N1−1.4 (3)C19—C18—N2—C10124.87 (14)
N1—C7—C8—O1−179.38 (12)C17—C18—N2—C101.87 (15)
C6—C7—C8—O10.29 (17)C19—C18—N2—C9−61.38 (19)
N1—C7—C8—C90.5 (2)C17—C18—N2—C9175.62 (13)
C6—C7—C8—C9−179.86 (14)O3—C17—N3—C10−178.92 (15)
C7—C8—C9—O2−177.07 (16)C18—C17—N3—C100.95 (16)
O1—C8—C9—O22.8 (3)O3—C17—N3—C11−10.7 (3)
C7—C8—C9—N22.7 (2)C18—C17—N3—C11169.13 (13)
O1—C8—C9—N2−177.49 (13)N1—C10—N3—C17−178.61 (14)
C16—C11—C12—C13−1.0 (3)N2—C10—N3—C170.25 (17)
N3—C11—C12—C13176.04 (15)N1—C10—N3—C1112.7 (2)
C11—C12—C13—C140.2 (3)N2—C10—N3—C11−168.47 (13)
C12—C13—C14—C151.3 (3)C12—C11—N3—C17134.92 (17)
C13—C14—C15—C16−2.0 (3)C16—C11—N3—C17−48.0 (2)
C12—C11—C16—C150.3 (3)C12—C11—N3—C10−58.1 (2)
N3—C11—C16—C15−176.76 (15)C16—C11—N3—C10118.95 (17)
C14—C15—C16—C111.2 (3)C7—C8—O1—C1−0.59 (16)
O3—C17—C18—N2178.21 (15)C9—C8—O1—C1179.56 (14)
N3—C17—C18—N2−1.66 (15)C2—C1—O1—C8−179.22 (14)
O3—C17—C18—C1953.7 (2)C6—C1—O1—C80.68 (16)
N3—C17—C18—C19−126.20 (14)O4—C20—O5—C21−1.4 (2)
N2—C18—C19—C20−83.04 (17)C19—C20—O5—C21177.50 (14)
C17—C18—C19—C2033.47 (19)C22—C21—O5—C20−175.36 (16)
D—H···AD—HH···AD···AD—H···A
C2—H2···O5i0.932.563.442 (2)159
C3—H3···O4ii0.932.583.305 (2)135
C5—H5···O2iii0.932.463.132 (2)129
C15—H15···O3iv0.932.533.434 (2)163
C19—H19A···O20.972.523.137 (2)122
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2⋯O5i0.932.563.442 (2)159
C3—H3⋯O4ii0.932.583.305 (2)135
C5—H5⋯O2iii0.932.463.132 (2)129
C15—H15⋯O3iv0.932.533.434 (2)163
C19—H19A⋯O20.972.523.137 (2)122

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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Authors:  Eric Duval; April Case; Ross L Stein; Gregory D Cuny
Journal:  Bioorg Med Chem Lett       Date:  2005-04-01       Impact factor: 2.823

4.  Shaken not stirred: a facile synthesis of 1,4-bis(furo[2,3-d]-pyrimidine-2,4(1H,3H)-dione-5-yl)benzenes by one-pot reaction of isocyanides, N,N'-dimethylbarbituric acid, and terephthaldialdehyde.

Authors:  Mohammad Bagher Teimouri; Reihaneh Bazhrang
Journal:  Bioorg Med Chem Lett       Date:  2006-05-19       Impact factor: 2.823

5.  Ethyl 2-[1-(4-chloro-phen-yl)-2,5-dioxo-1,2,3,5-tetra-hydro-imidazo[1',2':1,2]pyrimidino[5,4-b][1]benzofuran-3-yl]acetate.

Authors:  Yang-Gen Hu; Zheng-Rong Zhu; Yu-Lu Chen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2007-12-21

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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