Literature DB >> 21588448

Absolute configuration of vouaca-pen-5α-ol.

Hoong-Kun Fun, Orapun Yodsaoue, Suchada Chantrapromma, Chatchanok Karalai.   

Abstract

The title compound, C(20)H(30)O(2), {systematic name: (4aR,6aS,7R,11aS,11bR)-4,4,7,11b-tetra-methyl-1,2,3,4,4a,5,6,6a,7,11,11a,11b-dodeca-hydro-phenanthro[3,2-b]furan-4a-ol}, is a cas-sane furan-oditerpene which was isolated from the roots of Caesalpinia pulcherrima. The absolute configurations at positions 4a, 6a, 7, 11a and 11b are R, S, R, S and R, respectively. The mol-ecule has four-fused rings consisting of three cyclo-hexane rings and one furan ring. The three cyclo-hexane rings are trans-fused. Two cyclo-hexane rings are in chair conformations, while the third is in an envelope conformation. In the crystal structure, the mol-ecules are linked by inter-molecular O-H⋯O hydrogen bonds into a zigzag chain along the a axis. A short O⋯O contact [3.0398 (14) Å] is also present.

Entities:  

Year:  2010        PMID: 21588448      PMCID: PMC3007238          DOI: 10.1107/S1600536810029557

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For ring conformations, see: Cremer & Pople (1975 ▶). For bond-length data, see: Allen et al. (1987 ▶). For background to cassane furan­oditerpenes and their biological activities, see: Che et al. (1986 ▶); Jiang et al. (2001 ▶); McPherson et al. (1986 ▶); Promsawan et al. (2003 ▶); Ragasa et al. (2002 ▶); Smitinand & Larson (2001 ▶); Tewtrakul et al. (2003 ▶). For related structures, see: Fun et al. (2010 ▶); Jiang et al. (2001 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C20H30O2 M = 302.44 Orthorhombic, a = 6.7367 (2) Å b = 12.7818 (3) Å c = 19.3472 (5) Å V = 1665.93 (8) Å3 Z = 4 Cu Kα radiation μ = 0.58 mm−1 T = 100 K 0.29 × 0.22 × 0.17 mm

Data collection

Bruker APEX DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.851, T max = 0.908 30751 measured reflections 2880 independent reflections 2856 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.027 wR(F 2) = 0.088 S = 1.16 2880 reflections 207 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.25 e Å−3 Absolute structure: Flack (1983 ▶), 1202 Friedel pairs Flack parameter: 0.0 (2) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810029557/is2581sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810029557/is2581Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C20H30O2Dx = 1.206 Mg m3
Mr = 302.44Melting point = 371–373 K
Orthorhombic, P212121Cu Kα radiation, λ = 1.54178 Å
Hall symbol: P 2ac 2abCell parameters from 2880 reflections
a = 6.7367 (2) Åθ = 4.6–66.0°
b = 12.7818 (3) ŵ = 0.58 mm1
c = 19.3472 (5) ÅT = 100 K
V = 1665.93 (8) Å3Block, colorless
Z = 40.29 × 0.22 × 0.17 mm
F(000) = 664
Bruker APEX DUO CCD area-detector diffractometer2880 independent reflections
Radiation source: sealed tube2856 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 66.0°, θmin = 4.6°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −7→7
Tmin = 0.851, Tmax = 0.908k = −15→15
30751 measured reflectionsl = −22→22
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.027H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.088w = 1/[σ2(Fo2) + (0.0545P)2 + 0.2119P] where P = (Fo2 + 2Fc2)/3
S = 1.16(Δ/σ)max = 0.001
2880 reflectionsΔρmax = 0.21 e Å3
207 parametersΔρmin = −0.25 e Å3
0 restraintsAbsolute structure: Flack (1983), 1202 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.0 (2)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O11.03886 (16)0.52792 (8)0.07346 (5)0.0334 (2)
O20.57276 (13)0.96871 (7)0.08320 (5)0.0258 (2)
C10.9773 (2)0.93648 (11)0.02533 (7)0.0275 (3)
H1A1.08860.89240.01270.033*
H1B0.86770.9195−0.00520.033*
C21.0353 (2)1.05118 (11)0.01446 (8)0.0328 (3)
H2A1.15521.06620.04040.039*
H2B1.06361.0628−0.03410.039*
C30.8709 (2)1.12537 (11)0.03751 (8)0.0304 (3)
H3A0.75751.11630.00720.036*
H3B0.91721.19680.03230.036*
C40.8027 (2)1.10897 (11)0.11288 (7)0.0273 (3)
C50.7496 (2)0.98994 (10)0.12352 (7)0.0235 (3)
C60.6857 (2)0.96538 (11)0.19790 (7)0.0265 (3)
H6A0.79610.97860.22890.032*
H6B0.57791.01160.21090.032*
C70.6185 (2)0.85208 (11)0.20597 (7)0.0264 (3)
H7A0.49320.84340.18190.032*
H7B0.59480.83850.25460.032*
C80.76551 (19)0.77021 (11)0.17865 (6)0.0235 (3)
H8A0.88490.77420.20750.028*
C90.8275 (2)0.79830 (10)0.10381 (6)0.0231 (3)
H9A0.70590.79880.07600.028*
C100.91614 (19)0.91155 (10)0.10034 (7)0.0233 (3)
C110.9692 (2)0.71734 (11)0.07021 (7)0.0295 (3)
H11A0.94710.71570.02070.035*
H11B1.10580.73810.07830.035*
C120.9355 (2)0.61239 (11)0.09923 (7)0.0274 (3)
C130.8133 (2)0.58241 (11)0.15075 (7)0.0261 (3)
C140.6792 (2)0.65857 (11)0.18679 (6)0.0249 (3)
H14A0.67970.64130.23620.030*
C150.8399 (2)0.47142 (12)0.15815 (7)0.0316 (3)
H15A0.77510.42780.18930.038*
C160.9764 (3)0.44313 (11)0.11136 (7)0.0349 (3)
H16A1.02270.37520.10530.042*
C170.4653 (2)0.64563 (12)0.16019 (7)0.0301 (3)
H17A0.43120.57270.15950.045*
H17B0.45550.67380.11430.045*
H17C0.37580.68240.19020.045*
C180.6175 (2)1.17717 (12)0.12459 (8)0.0370 (4)
H18A0.64591.24800.11130.056*
H18B0.58151.17530.17260.056*
H18C0.50971.15080.09720.056*
C190.9636 (3)1.14968 (12)0.16241 (8)0.0376 (4)
H19A0.96891.22460.16000.056*
H19B1.09001.12110.14940.056*
H19C0.93241.12870.20880.056*
C201.1033 (2)0.91693 (12)0.14665 (8)0.0308 (3)
H20A1.16790.85000.14700.046*
H20B1.06540.93540.19290.046*
H20C1.19280.96880.12880.046*
H1O20.602 (3)0.9757 (14)0.0405 (10)0.038 (5)*
U11U22U33U12U13U23
O10.0389 (6)0.0318 (5)0.0295 (5)0.0068 (5)0.0075 (4)0.0007 (4)
O20.0193 (5)0.0341 (5)0.0239 (5)−0.0007 (4)−0.0017 (4)0.0012 (4)
C10.0247 (7)0.0333 (7)0.0245 (7)−0.0005 (6)0.0057 (5)0.0007 (5)
C20.0313 (8)0.0389 (8)0.0283 (7)−0.0058 (6)0.0075 (6)0.0034 (6)
C30.0345 (8)0.0288 (7)0.0278 (7)−0.0061 (6)0.0020 (6)0.0016 (5)
C40.0290 (7)0.0296 (7)0.0232 (7)−0.0039 (6)0.0000 (6)−0.0007 (5)
C50.0192 (6)0.0302 (7)0.0212 (6)−0.0002 (5)0.0002 (5)0.0000 (5)
C60.0258 (6)0.0328 (7)0.0210 (6)0.0017 (6)0.0025 (5)−0.0028 (5)
C70.0242 (6)0.0342 (7)0.0207 (6)0.0013 (6)0.0058 (5)0.0015 (5)
C80.0195 (6)0.0324 (7)0.0184 (6)0.0010 (6)−0.0001 (5)0.0016 (5)
C90.0192 (6)0.0306 (7)0.0196 (6)0.0015 (5)0.0015 (5)0.0009 (5)
C100.0184 (6)0.0299 (7)0.0216 (6)−0.0009 (5)0.0005 (5)0.0004 (5)
C110.0285 (7)0.0334 (7)0.0267 (7)0.0032 (6)0.0075 (6)0.0019 (6)
C120.0284 (7)0.0314 (7)0.0224 (7)0.0064 (6)0.0001 (5)−0.0029 (5)
C130.0265 (7)0.0306 (7)0.0213 (6)−0.0006 (5)−0.0032 (5)0.0011 (5)
C140.0248 (6)0.0330 (7)0.0169 (6)−0.0005 (6)0.0019 (5)0.0020 (5)
C150.0380 (8)0.0323 (7)0.0244 (7)−0.0020 (7)−0.0005 (6)0.0029 (6)
C160.0480 (9)0.0277 (7)0.0290 (7)0.0059 (7)0.0004 (7)0.0022 (6)
C170.0267 (7)0.0376 (7)0.0260 (7)−0.0036 (6)0.0012 (6)0.0025 (6)
C180.0438 (9)0.0311 (7)0.0363 (8)0.0042 (7)0.0063 (7)−0.0006 (6)
C190.0437 (9)0.0375 (8)0.0315 (8)−0.0123 (7)−0.0046 (7)−0.0035 (6)
C200.0191 (6)0.0412 (8)0.0321 (7)−0.0023 (6)−0.0034 (6)0.0025 (6)
O1—C161.3745 (17)C9—C111.5507 (18)
O1—C121.3780 (16)C9—C101.5673 (18)
O2—C51.4494 (16)C9—H9A0.9800
O2—H1O20.85 (2)C10—C201.5486 (18)
C1—C21.5319 (19)C11—C121.4719 (19)
C1—C101.5417 (18)C11—H11A0.9700
C1—H1A0.9700C11—H11B0.9700
C1—H1B0.9700C12—C131.348 (2)
C2—C31.525 (2)C13—C151.437 (2)
C2—H2A0.9700C13—C141.5001 (19)
C2—H2B0.9700C14—C171.5388 (19)
C3—C41.5432 (19)C14—H14A0.9800
C3—H3A0.9700C15—C161.340 (2)
C3—H3B0.9700C15—H15A0.9300
C4—C191.538 (2)C16—H16A0.9300
C4—C181.538 (2)C17—H17A0.9600
C4—C51.5764 (19)C17—H17B0.9600
C5—C61.5345 (18)C17—H17C0.9600
C5—C101.5699 (18)C18—H18A0.9600
C6—C71.525 (2)C18—H18B0.9600
C6—H6A0.9700C18—H18C0.9600
C6—H6B0.9700C19—H19A0.9600
C7—C81.5347 (18)C19—H19B0.9600
C7—H7A0.9700C19—H19C0.9600
C7—H7B0.9700C20—H20A0.9600
C8—C141.5489 (19)C20—H20B0.9600
C8—C91.5493 (17)C20—H20C0.9600
C8—H8A0.9800
C16—O1—C12105.67 (11)C10—C9—H9A106.8
C5—O2—H1O2108.0 (13)C1—C10—C20108.54 (11)
C2—C1—C10113.28 (11)C1—C10—C9109.45 (10)
C2—C1—H1A108.9C20—C10—C9109.06 (11)
C10—C1—H1A108.9C1—C10—C5109.14 (10)
C2—C1—H1B108.9C20—C10—C5112.86 (11)
C10—C1—H1B108.9C9—C10—C5107.75 (10)
H1A—C1—H1B107.7C12—C11—C9110.69 (11)
C3—C2—C1111.68 (11)C12—C11—H11A109.5
C3—C2—H2A109.3C9—C11—H11A109.5
C1—C2—H2A109.3C12—C11—H11B109.5
C3—C2—H2B109.3C9—C11—H11B109.5
C1—C2—H2B109.3H11A—C11—H11B108.1
H2A—C2—H2B107.9C13—C12—O1110.69 (12)
C2—C3—C4114.09 (12)C13—C12—C11129.43 (12)
C2—C3—H3A108.7O1—C12—C11119.88 (12)
C4—C3—H3A108.7C12—C13—C15106.14 (13)
C2—C3—H3B108.7C12—C13—C14121.80 (12)
C4—C3—H3B108.7C15—C13—C14132.02 (13)
H3A—C3—H3B107.6C13—C14—C17109.80 (11)
C19—C4—C18106.74 (12)C13—C14—C8108.93 (11)
C19—C4—C3109.45 (12)C17—C14—C8114.61 (11)
C18—C4—C3107.68 (12)C13—C14—H14A107.8
C19—C4—C5113.90 (11)C17—C14—H14A107.8
C18—C4—C5110.10 (11)C8—C14—H14A107.8
C3—C4—C5108.79 (11)C16—C15—C13106.54 (13)
O2—C5—C6103.66 (10)C16—C15—H15A126.7
O2—C5—C10108.31 (10)C13—C15—H15A126.7
C6—C5—C10109.74 (10)C15—C16—O1110.95 (13)
O2—C5—C4107.27 (10)C15—C16—H16A124.5
C6—C5—C4112.55 (11)O1—C16—H16A124.5
C10—C5—C4114.61 (10)C14—C17—H17A109.5
C7—C6—C5111.92 (11)C14—C17—H17B109.5
C7—C6—H6A109.2H17A—C17—H17B109.5
C5—C6—H6A109.2C14—C17—H17C109.5
C7—C6—H6B109.2H17A—C17—H17C109.5
C5—C6—H6B109.2H17B—C17—H17C109.5
H6A—C6—H6B107.9C4—C18—H18A109.5
C6—C7—C8114.87 (11)C4—C18—H18B109.5
C6—C7—H7A108.5H18A—C18—H18B109.5
C8—C7—H7A108.5C4—C18—H18C109.5
C6—C7—H7B108.5H18A—C18—H18C109.5
C8—C7—H7B108.5H18B—C18—H18C109.5
H7A—C7—H7B107.5C4—C19—H19A109.5
C7—C8—C14110.54 (11)C4—C19—H19B109.5
C7—C8—C9109.74 (11)H19A—C19—H19B109.5
C14—C8—C9114.19 (11)C4—C19—H19C109.5
C7—C8—H8A107.4H19A—C19—H19C109.5
C14—C8—H8A107.4H19B—C19—H19C109.5
C9—C8—H8A107.4C10—C20—H20A109.5
C8—C9—C11113.77 (11)C10—C20—H20B109.5
C8—C9—C10110.90 (10)H20A—C20—H20B109.5
C11—C9—C10111.33 (10)C10—C20—H20C109.5
C8—C9—H9A106.8H20A—C20—H20C109.5
C11—C9—H9A106.8H20B—C20—H20C109.5
C10—C1—C2—C3−55.24 (17)C11—C9—C10—C5170.45 (11)
C1—C2—C3—C455.00 (16)O2—C5—C10—C166.93 (13)
C2—C3—C4—C1972.73 (15)C6—C5—C10—C1179.45 (11)
C2—C3—C4—C18−171.60 (12)C4—C5—C10—C1−52.77 (14)
C2—C3—C4—C5−52.30 (15)O2—C5—C10—C20−172.30 (10)
C19—C4—C5—O2169.30 (11)C6—C5—C10—C20−59.78 (14)
C18—C4—C5—O249.46 (14)C4—C5—C10—C2068.00 (14)
C3—C4—C5—O2−68.32 (13)O2—C5—C10—C9−51.83 (13)
C19—C4—C5—C655.92 (15)C6—C5—C10—C960.69 (13)
C18—C4—C5—C6−63.92 (15)C4—C5—C10—C9−171.54 (10)
C3—C4—C5—C6178.30 (11)C8—C9—C11—C1228.58 (16)
C19—C4—C5—C10−70.41 (15)C10—C9—C11—C12154.78 (11)
C18—C4—C5—C10169.75 (11)C16—O1—C12—C13−0.18 (16)
C3—C4—C5—C1051.97 (14)C16—O1—C12—C11179.32 (13)
O2—C5—C6—C759.70 (13)C9—C11—C12—C13−4.3 (2)
C10—C5—C6—C7−55.82 (14)C9—C11—C12—O1176.33 (12)
C4—C5—C6—C7175.28 (11)O1—C12—C13—C15−0.23 (16)
C5—C6—C7—C851.72 (15)C11—C12—C13—C15−179.67 (15)
C6—C7—C8—C14−177.79 (11)O1—C12—C13—C14−178.36 (11)
C6—C7—C8—C9−50.97 (15)C11—C12—C13—C142.2 (2)
C7—C8—C9—C11−177.42 (11)C12—C13—C14—C17102.74 (15)
C14—C8—C9—C11−52.68 (15)C15—C13—C14—C17−74.84 (18)
C7—C8—C9—C1056.15 (14)C12—C13—C14—C8−23.52 (17)
C14—C8—C9—C10−179.10 (10)C15—C13—C14—C8158.90 (14)
C2—C1—C10—C20−70.08 (15)C7—C8—C14—C13172.14 (10)
C2—C1—C10—C9171.00 (11)C9—C8—C14—C1347.82 (14)
C2—C1—C10—C553.30 (15)C7—C8—C14—C1748.70 (14)
C8—C9—C10—C1179.65 (11)C9—C8—C14—C17−75.62 (14)
C11—C9—C10—C151.88 (14)C12—C13—C15—C160.56 (17)
C8—C9—C10—C2061.04 (13)C14—C13—C15—C16178.42 (14)
C11—C9—C10—C20−66.72 (13)C13—C15—C16—O1−0.70 (17)
C8—C9—C10—C5−61.79 (13)C12—O1—C16—C150.56 (17)
D—H···AD—HH···AD···AD—H···A
O2—H1O2···O1i0.854 (19)2.246 (19)3.0398 (14)154.7 (18)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯O1i0.854 (19)2.246 (19)3.0398 (14)154.7 (18)

Symmetry code: (i) .

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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Netnapa Promsawan; Prasat Kittakoop; Surat Boonphong; Pakawan Nongkunsarn
Journal:  Planta Med       Date:  2003-08       Impact factor: 3.352

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Authors:  Consolacion Y Ragasa; Joy G Hofileña; John A Rideout
Journal:  J Nat Prod       Date:  2002-08       Impact factor: 4.050

6.  Absolute configuration of isovouacapenol C.

Authors:  Hoong-Kun Fun; Orapun Yodsaoue; Chatchanok Karalai; Suchada Chantrapromma
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-17

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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  1 in total

1.  Crystal structure and Hirshfeld surface analysis of pulcherrin J.

Authors:  K Osahon Ogbeide; J Bodunde Owolabi; Abiodun Falodun; M Iqbal Choudhary; Sammer Yousuf
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2017-09-29
  1 in total

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