Literature DB >> 21588313

Ethyl 5-methyl-imidazo[1,2-a]pyridine-2-carboxyl-ate.

Jin-Hua Yao1, Lan-Fang Wang, Bing Guo, Kang An, Jian-Ning Guan.   

Abstract

The title compound, C(11)H(12)N(2)O(2), was synthesized from the reaction of 6-methyl-pyridin-2-amine and ethyl 3-bromo-2-oxopropionate. In the mol-ecular structure, the six- and five-membered rings are individually almost planar with r.m.s. deviations of 0.003 and 0.002 Å, respectively. The two rings are almost coplanar, the dihedral angle between their planes being 1.4 (3)°. Inter-molecular C-H⋯O and C-H⋯N hydrogen bonds are present in the crystal structure.

Entities:  

Year:  2010        PMID: 21588313      PMCID: PMC3007311          DOI: 10.1107/S1600536810026577

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of related compounds, see: Xia et al. (2005 ▶); Warshakoon et al. (2006 ▶); Imaeda et al. (2008 ▶). For the synthetic procedure, see: Xia et al. (2005 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C11H12N2O2 M = 204.23 Monoclinic, a = 17.164 (3) Å b = 10.521 (2) Å c = 13.759 (3) Å β = 124.77 (3)° V = 2041 (1) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.973, T max = 0.991 1923 measured reflections 1859 independent reflections 1360 reflections with I > 2σ(I) R int = 0.028 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.152 S = 1.00 1859 reflections 137 parameters H-atom parameters constrained Δρmax = 0.24 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810026577/im2214sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810026577/im2214Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H12N2O2F(000) = 864
Mr = 204.23Dx = 1.329 Mg m3
Monoclinic, C2/cMelting point = 425–426 K
Hall symbol: -C 2ycMo Kα radiation, λ = 0.71073 Å
a = 17.164 (3) ÅCell parameters from 25 reflections
b = 10.521 (2) Åθ = 9–13°
c = 13.759 (3) ŵ = 0.09 mm1
β = 124.77 (3)°T = 293 K
V = 2041 (1) Å3Block, colorless
Z = 80.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer1360 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.028
graphiteθmax = 25.3°, θmin = 2.4°
ω/2θ scansh = −20→0
Absorption correction: ψ scan (North et al., 1968)k = −12→0
Tmin = 0.973, Tmax = 0.991l = −13→16
1923 measured reflections3 standard reflections every 200 reflections
1859 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H-atom parameters constrained
wR(F2) = 0.152w = 1/[σ2(Fo2) + (0.1P)2] where P = (Fo2 + 2Fc2)/3
S = 1.00(Δ/σ)max < 0.001
1859 reflectionsΔρmax = 0.24 e Å3
137 parametersΔρmin = −0.20 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0117 (17)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N10.12866 (11)0.40243 (18)0.19751 (15)0.0466 (5)
O10.07064 (11)0.13738 (15)0.15389 (15)0.0602 (5)
C10.06679 (17)0.7803 (2)0.15626 (19)0.0523 (6)
H1B0.05020.86580.14520.063*
N20.02673 (11)0.56505 (15)0.13920 (13)0.0376 (4)
O2−0.07427 (10)0.20448 (14)0.09371 (13)0.0512 (5)
C20.16246 (17)0.7466 (3)0.2109 (2)0.0582 (6)
H2A0.20750.81020.23460.070*
C30.19016 (14)0.6232 (2)0.22978 (18)0.0527 (6)
H3A0.25370.60200.26650.063*
C40.12108 (13)0.5273 (2)0.19286 (17)0.0422 (5)
C50.03813 (14)0.3590 (2)0.14702 (17)0.0408 (5)
C6−0.02457 (13)0.45553 (19)0.11134 (16)0.0387 (5)
H6A−0.08960.44870.07510.046*
C7−0.00174 (15)0.6916 (2)0.11927 (17)0.0432 (5)
C8−0.10473 (15)0.7154 (2)0.05724 (19)0.0509 (6)
H8A−0.11640.80530.04800.076*
H8B−0.12600.68070.10280.076*
H8C−0.13850.6757−0.01920.076*
C90.01645 (14)0.2218 (2)0.13352 (17)0.0432 (5)
C10−0.10735 (16)0.0748 (2)0.0699 (2)0.0560 (6)
H10A−0.07010.02410.14120.067*
H10B−0.10110.03860.00980.067*
C11−0.20816 (17)0.0755 (3)0.0283 (2)0.0727 (8)
H11A−0.2321−0.00990.01140.109*
H11B−0.24430.1261−0.04210.109*
H11C−0.21340.11090.08870.109*
U11U22U33U12U13U23
N10.0347 (9)0.0568 (12)0.0450 (10)0.0026 (8)0.0208 (8)0.0007 (8)
O10.0514 (10)0.0524 (10)0.0734 (11)0.0127 (8)0.0335 (9)0.0054 (8)
C10.0589 (14)0.0472 (13)0.0525 (13)−0.0098 (11)0.0328 (11)−0.0024 (10)
N20.0335 (9)0.0460 (10)0.0347 (9)−0.0019 (7)0.0202 (7)−0.0025 (7)
O20.0443 (9)0.0417 (9)0.0654 (10)−0.0026 (6)0.0301 (8)−0.0048 (7)
C20.0540 (14)0.0666 (16)0.0554 (13)−0.0196 (12)0.0320 (11)−0.0058 (12)
C30.0362 (11)0.0717 (17)0.0488 (13)−0.0106 (10)0.0234 (10)−0.0027 (11)
C40.0330 (10)0.0564 (14)0.0360 (10)−0.0003 (9)0.0188 (8)−0.0004 (9)
C50.0365 (10)0.0492 (12)0.0365 (10)0.0012 (9)0.0207 (9)0.0003 (9)
C60.0327 (10)0.0457 (12)0.0372 (10)−0.0037 (9)0.0196 (8)−0.0020 (9)
C70.0474 (12)0.0466 (13)0.0387 (11)−0.0031 (10)0.0264 (9)−0.0024 (9)
C80.0498 (13)0.0447 (13)0.0588 (13)0.0022 (10)0.0313 (11)−0.0019 (10)
C90.0397 (11)0.0491 (13)0.0401 (11)0.0056 (9)0.0223 (9)0.0022 (9)
C100.0557 (14)0.0427 (13)0.0662 (15)−0.0034 (10)0.0327 (12)−0.0038 (11)
C110.0557 (15)0.0608 (17)0.092 (2)−0.0087 (12)0.0369 (15)−0.0109 (14)
N1—C41.318 (3)C3—H3A0.9300
N1—C51.369 (2)C5—C61.352 (3)
O1—C91.198 (2)C5—C91.475 (3)
C1—C71.353 (3)C6—H6A0.9300
C1—C21.407 (3)C7—C81.482 (3)
C1—H1B0.9300C8—H8A0.9600
N2—C61.366 (2)C8—H8B0.9600
N2—C71.391 (3)C8—H8C0.9600
N2—C41.401 (2)C10—C111.480 (3)
O2—C91.336 (2)C10—H10A0.9700
O2—C101.442 (3)C10—H10B0.9700
C2—C31.357 (4)C11—H11A0.9600
C2—H2A0.9300C11—H11B0.9600
C3—C41.412 (3)C11—H11C0.9600
C4—N1—C5104.84 (16)C1—C7—C8126.6 (2)
C7—C1—C2121.8 (2)N2—C7—C8116.43 (18)
C7—C1—H1B119.1C7—C8—H8A109.5
C2—C1—H1B119.1C7—C8—H8B109.5
C6—N2—C7130.90 (17)H8A—C8—H8B109.5
C6—N2—C4105.97 (16)C7—C8—H8C109.5
C7—N2—C4123.11 (16)H8A—C8—H8C109.5
C9—O2—C10116.01 (17)H8B—C8—H8C109.5
C3—C2—C1121.2 (2)O1—C9—O2124.2 (2)
C3—C2—H2A119.4O1—C9—C5126.1 (2)
C1—C2—H2A119.4O2—C9—C5109.67 (17)
C2—C3—C4119.0 (2)O2—C10—C11107.8 (2)
C2—C3—H3A120.5O2—C10—H10A110.2
C4—C3—H3A120.5C11—C10—H10A110.2
N1—C4—N2111.15 (17)O2—C10—H10B110.2
N1—C4—C3130.93 (19)C11—C10—H10B110.2
N2—C4—C3117.91 (19)H10A—C10—H10B108.5
C6—C5—N1111.79 (19)C10—C11—H11A109.5
C6—C5—C9126.71 (19)C10—C11—H11B109.5
N1—C5—C9121.48 (18)H11A—C11—H11B109.5
C5—C6—N2106.24 (17)C10—C11—H11C109.5
C5—C6—H6A126.9H11A—C11—H11C109.5
N2—C6—H6A126.9H11B—C11—H11C109.5
C1—C7—N2117.0 (2)
C7—C1—C2—C3−0.6 (3)C4—N2—C6—C5−0.42 (19)
C1—C2—C3—C40.4 (3)C2—C1—C7—N20.9 (3)
C5—N1—C4—N2−0.5 (2)C2—C1—C7—C8−177.8 (2)
C5—N1—C4—C3−179.0 (2)C6—N2—C7—C1−178.96 (19)
C6—N2—C4—N10.6 (2)C4—N2—C7—C1−1.2 (3)
C7—N2—C4—N1−177.71 (17)C6—N2—C7—C8−0.2 (3)
C6—N2—C4—C3179.30 (17)C4—N2—C7—C8177.64 (16)
C7—N2—C4—C31.0 (3)C10—O2—C9—O1−2.8 (3)
C2—C3—C4—N1177.8 (2)C10—O2—C9—C5176.75 (17)
C2—C3—C4—N2−0.6 (3)C6—C5—C9—O1171.5 (2)
C4—N1—C5—C60.2 (2)N1—C5—C9—O1−6.9 (3)
C4—N1—C5—C9178.87 (19)C6—C5—C9—O2−8.0 (3)
N1—C5—C6—N20.2 (2)N1—C5—C9—O2173.49 (16)
C9—C5—C6—N2−178.43 (18)C9—O2—C10—C11179.40 (18)
C7—N2—C6—C5177.67 (18)
D—H···AD—HH···AD···AD—H···A
C2—H2A···N1i0.932.593.461 (4)155
C3—H3A···O1i0.932.583.456 (4)157
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C2—H2A⋯N1i0.932.593.461 (4)155
C3—H3A⋯O1i0.932.583.456 (4)157

Symmetry code: (i) .

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