Literature DB >> 21588279

(E)-1-(2-Nitro-benzyl-idene)-2-phenyl-hydrazine.

Hazoor Ahmad Shad, M Nawaz Tahir, Muhammad Ilyas Tariq, Muhammad Sarfraz, Shahbaz Ahmad.   

Abstract

The asymmetric unit of the title compound, C(13)H(11)N(3)O(2), contains two mol-ecules with slightly different conformations: the dihedral angle between the aromatic rings is 13.01 (10)° in one mol-ecule and 14.05 (10)° in the other. Both mol-ecules feature short intra-molecular C-H⋯O contacts, which generate S(6) rings. In the crystal, both mol-ecules form inversion dimers linked by pairs of N-H⋯O hydrogen bonds, thereby generating R(2) (2)(16) rings.

Entities:  

Year:  2010        PMID: 21588279      PMCID: PMC3007397          DOI: 10.1107/S1600536810025882

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background information on Schiff bases and related crystal structures, see: Mufakkar et al. (2010 ▶); Tahir et al. (2010 ▶). For graph-set notation, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C13H11N3O2 M = 241.25 Orthorhombic, a = 19.4021 (13) Å b = 12.1065 (7) Å c = 20.0554 (11) Å V = 4710.8 (5) Å3 Z = 16 Mo Kα radiation μ = 0.10 mm−1 T = 296 K 0.32 × 0.28 × 0.24 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2005 ▶) T min = 0.972, T max = 0.979 18932 measured reflections 4260 independent reflections 2577 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.045 wR(F 2) = 0.117 S = 1.01 4260 reflections 325 parameters H-atom parameters constrained Δρmax = 0.16 e Å−3 Δρmin = −0.14 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810025882/hb5534sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810025882/hb5534Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H11N3O2F(000) = 2016
Mr = 241.25Dx = 1.361 Mg m3
Orthorhombic, PbcaMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ac 2abCell parameters from 2577 reflections
a = 19.4021 (13) Åθ = 2.2–25.3°
b = 12.1065 (7) ŵ = 0.10 mm1
c = 20.0554 (11) ÅT = 296 K
V = 4710.8 (5) Å3Prism, violet
Z = 160.32 × 0.28 × 0.24 mm
Bruker Kappa APEXII CCD diffractometer4260 independent reflections
Radiation source: fine-focus sealed tube2577 reflections with I > 2σ(I)
graphiteRint = 0.041
Detector resolution: 8.20 pixels mm-1θmax = 25.3°, θmin = 2.2°
ω scansh = −21→23
Absorption correction: multi-scan (SADABS; Bruker, 2005)k = −13→14
Tmin = 0.972, Tmax = 0.979l = −24→24
18932 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.045Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.117H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.0426P)2 + 0.9743P] where P = (Fo2 + 2Fc2)/3
4260 reflections(Δ/σ)max < 0.001
325 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.14 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.02767 (9)0.48801 (15)−0.11736 (8)0.0811 (7)
O2−0.03824 (10)0.64989 (16)−0.15815 (9)0.0982 (8)
N10.12471 (9)0.27574 (14)−0.00241 (8)0.0646 (7)
N20.12334 (8)0.38691 (13)0.00220 (8)0.0546 (6)
N3−0.01209 (9)0.58595 (18)−0.11891 (9)0.0642 (7)
C10.15768 (10)0.21311 (16)0.04626 (10)0.0519 (7)
C20.15290 (12)0.09962 (17)0.04246 (10)0.0634 (8)
C30.18603 (12)0.03400 (19)0.08869 (12)0.0709 (9)
C40.22378 (12)0.0800 (2)0.13901 (11)0.0709 (10)
C50.22787 (12)0.1929 (2)0.14304 (11)0.0716 (10)
C60.19503 (11)0.26019 (18)0.09740 (10)0.0621 (8)
C70.08784 (11)0.44017 (16)−0.04126 (10)0.0568 (8)
C80.08420 (10)0.56020 (16)−0.03663 (9)0.0505 (7)
C90.03909 (11)0.62879 (17)−0.07170 (9)0.0528 (7)
C100.03841 (13)0.74245 (19)−0.06341 (12)0.0724 (9)
C110.08391 (15)0.79155 (19)−0.02040 (13)0.0799 (10)
C120.12983 (13)0.7266 (2)0.01410 (12)0.0764 (10)
C130.13014 (11)0.61467 (18)0.00641 (10)0.0621 (8)
O30.53109 (9)0.28838 (15)0.13060 (9)0.0901 (8)
O40.52867 (11)0.44681 (16)0.08338 (9)0.1054 (8)
N40.37407 (9)0.07450 (14)0.24028 (8)0.0580 (6)
N50.38069 (8)0.18402 (13)0.25032 (8)0.0529 (6)
N60.51143 (10)0.38409 (18)0.12819 (9)0.0680 (8)
C140.33940 (10)0.00973 (16)0.28709 (10)0.0501 (7)
C150.30960 (11)0.05488 (18)0.34361 (10)0.0608 (8)
C160.27540 (12)−0.0131 (2)0.38795 (11)0.0713 (9)
C170.27064 (12)−0.1249 (2)0.37713 (12)0.0723 (9)
C180.30009 (12)−0.16936 (18)0.32096 (12)0.0706 (9)
C190.33432 (11)−0.10272 (17)0.27593 (11)0.0610 (8)
C200.41511 (10)0.23954 (16)0.20722 (10)0.0539 (7)
C210.42235 (10)0.35828 (16)0.21663 (9)0.0487 (7)
C220.46637 (10)0.42733 (17)0.18061 (10)0.0527 (7)
C230.47060 (12)0.53979 (18)0.19184 (11)0.0642 (8)
C240.43038 (13)0.58790 (19)0.23970 (12)0.0719 (9)
C250.38560 (12)0.5228 (2)0.27580 (11)0.0678 (9)
C260.38167 (11)0.41148 (18)0.26445 (10)0.0596 (8)
H10.105130.24344−0.035570.0775*
H20.127230.067160.008560.0761*
H30.18261−0.042440.085550.0851*
H40.246300.035600.169950.0851*
H50.253320.224890.177270.0858*
H60.198070.336610.101120.0746*
H70.064840.40278−0.075110.0682*
H100.007070.78539−0.087060.0868*
H110.083740.86777−0.014610.0959*
H120.161120.759520.043090.0917*
H130.161810.573000.030470.0745*
H4A0.391170.044550.205090.0696*
H150.312600.130380.351660.0729*
H160.255240.017390.425790.0856*
H170.24775−0.169930.407480.0868*
H180.29697−0.244920.313180.0848*
H190.35401−0.133560.237980.0732*
H200.435050.204670.170680.0647*
H230.500810.582730.166840.0770*
H240.433180.663410.247770.0862*
H250.357760.554830.308220.0814*
H260.350830.369690.289430.0716*
U11U22U33U12U13U23
O10.0805 (12)0.0809 (12)0.0818 (12)−0.0026 (10)−0.0189 (9)−0.0115 (9)
O20.0928 (14)0.1218 (15)0.0801 (12)0.0250 (12)−0.0258 (10)0.0245 (11)
N10.0801 (14)0.0509 (11)0.0628 (11)0.0090 (9)−0.0199 (10)−0.0048 (8)
N20.0537 (11)0.0525 (11)0.0575 (10)0.0061 (8)−0.0015 (9)−0.0006 (8)
N30.0593 (12)0.0829 (14)0.0504 (11)0.0128 (11)0.0009 (9)0.0032 (10)
C10.0478 (12)0.0550 (13)0.0530 (12)0.0077 (10)−0.0007 (10)0.0004 (10)
C20.0649 (15)0.0613 (14)0.0640 (14)0.0058 (12)−0.0117 (11)−0.0015 (11)
C30.0731 (16)0.0616 (14)0.0781 (16)0.0093 (12)−0.0048 (14)0.0072 (12)
C40.0629 (16)0.0837 (19)0.0660 (15)0.0187 (13)−0.0016 (12)0.0156 (12)
C50.0583 (15)0.097 (2)0.0595 (14)0.0071 (13)−0.0102 (11)−0.0014 (13)
C60.0562 (14)0.0670 (14)0.0632 (14)0.0044 (11)−0.0053 (11)−0.0060 (11)
C70.0614 (14)0.0557 (14)0.0533 (12)0.0019 (11)−0.0049 (11)−0.0015 (10)
C80.0495 (13)0.0528 (13)0.0492 (11)−0.0008 (10)0.0046 (10)0.0046 (9)
C90.0532 (13)0.0572 (13)0.0479 (12)−0.0021 (10)0.0013 (10)0.0052 (9)
C100.0797 (18)0.0590 (15)0.0784 (16)0.0070 (13)0.0002 (14)0.0158 (12)
C110.098 (2)0.0505 (14)0.0912 (18)−0.0078 (14)0.0007 (16)0.0030 (13)
C120.0789 (18)0.0650 (16)0.0854 (17)−0.0130 (14)−0.0085 (14)−0.0043 (13)
C130.0575 (14)0.0613 (14)0.0674 (14)−0.0010 (11)−0.0072 (12)0.0035 (11)
O30.0841 (13)0.0784 (12)0.1079 (14)−0.0043 (10)0.0345 (10)−0.0129 (10)
O40.1200 (16)0.1156 (15)0.0807 (12)−0.0243 (12)0.0354 (11)0.0206 (11)
N40.0609 (12)0.0537 (11)0.0593 (10)−0.0076 (9)0.0082 (9)0.0003 (8)
N50.0471 (10)0.0521 (11)0.0596 (10)−0.0030 (8)−0.0027 (8)0.0050 (8)
N60.0617 (13)0.0785 (14)0.0639 (12)−0.0201 (11)0.0049 (10)0.0003 (11)
C140.0411 (11)0.0551 (13)0.0540 (12)−0.0017 (10)−0.0054 (10)0.0088 (10)
C150.0600 (14)0.0611 (14)0.0612 (13)0.0017 (11)−0.0018 (11)0.0040 (11)
C160.0699 (16)0.0852 (18)0.0588 (14)0.0048 (14)0.0074 (12)0.0083 (13)
C170.0656 (16)0.0809 (18)0.0705 (15)−0.0069 (13)0.0057 (13)0.0224 (13)
C180.0674 (16)0.0575 (14)0.0870 (17)−0.0081 (12)0.0041 (14)0.0106 (12)
C190.0576 (14)0.0597 (14)0.0657 (13)−0.0019 (11)0.0077 (11)0.0022 (10)
C200.0495 (13)0.0569 (13)0.0554 (12)−0.0045 (10)0.0039 (10)0.0017 (10)
C210.0440 (12)0.0529 (12)0.0493 (11)−0.0018 (10)−0.0045 (10)0.0055 (9)
C220.0500 (12)0.0585 (13)0.0497 (12)−0.0034 (10)−0.0035 (10)0.0027 (10)
C230.0676 (15)0.0598 (15)0.0653 (14)−0.0136 (12)−0.0092 (12)0.0119 (11)
C240.0839 (18)0.0525 (14)0.0793 (16)0.0009 (13)−0.0142 (14)−0.0009 (12)
C250.0714 (16)0.0646 (16)0.0675 (14)0.0105 (12)0.0007 (13)−0.0037 (12)
C260.0556 (14)0.0627 (15)0.0606 (13)0.0006 (11)0.0033 (11)0.0041 (10)
O1—N31.224 (3)C5—H50.9300
O2—N31.215 (3)C6—H60.9300
O3—N61.221 (3)C7—H70.9300
O4—N61.223 (3)C10—H100.9300
N1—C11.392 (3)C11—H110.9300
N1—N21.349 (2)C12—H120.9300
N2—C71.285 (3)C13—H130.9300
N3—C91.467 (3)C14—C191.383 (3)
N1—H10.8600C14—C151.385 (3)
N4—N51.347 (2)C15—C161.382 (3)
N4—C141.396 (3)C16—C171.374 (3)
N5—C201.283 (3)C17—C181.373 (3)
N6—C221.464 (3)C18—C191.381 (3)
N4—H4A0.8600C20—C211.457 (3)
C1—C21.379 (3)C21—C261.399 (3)
C1—C61.379 (3)C21—C221.397 (3)
C2—C31.380 (3)C22—C231.382 (3)
C3—C41.366 (3)C23—C241.367 (3)
C4—C51.372 (3)C24—C251.379 (3)
C5—C61.381 (3)C25—C261.369 (3)
C7—C81.458 (3)C15—H150.9300
C8—C91.397 (3)C16—H160.9300
C8—C131.405 (3)C17—H170.9300
C9—C101.386 (3)C18—H180.9300
C10—C111.370 (4)C19—H190.9300
C11—C121.375 (4)C20—H200.9300
C12—C131.364 (3)C23—H230.9300
C2—H20.9300C24—H240.9300
C3—H30.9300C25—H250.9300
C4—H40.9300C26—H260.9300
N2—N1—C1120.29 (16)C11—C10—H10120.00
N1—N2—C7117.70 (16)C10—C11—H11120.00
O1—N3—O2122.04 (19)C12—C11—H11120.00
O1—N3—C9119.56 (18)C13—C12—H12120.00
O2—N3—C9118.4 (2)C11—C12—H12119.00
N2—N1—H1120.00C12—C13—H13119.00
C1—N1—H1120.00C8—C13—H13119.00
N5—N4—C14119.88 (16)N4—C14—C15122.00 (18)
N4—N5—C20117.69 (16)N4—C14—C19118.58 (18)
O4—N6—C22118.0 (2)C15—C14—C19119.42 (19)
O3—N6—C22119.83 (19)C14—C15—C16119.5 (2)
O3—N6—O4122.2 (2)C15—C16—C17121.2 (2)
C14—N4—H4A120.00C16—C17—C18119.2 (2)
N5—N4—H4A120.00C17—C18—C19120.5 (2)
N1—C1—C6122.54 (18)C14—C19—C18120.2 (2)
N1—C1—C2118.24 (18)N5—C20—C21118.69 (18)
C2—C1—C6119.22 (19)C22—C21—C26115.09 (18)
C1—C2—C3120.3 (2)C20—C21—C22125.64 (18)
C2—C3—C4120.8 (2)C20—C21—C26119.26 (18)
C3—C4—C5118.8 (2)C21—C22—C23122.79 (19)
C4—C5—C6121.5 (2)N6—C22—C21121.51 (18)
C1—C6—C5119.4 (2)N6—C22—C23115.70 (19)
N2—C7—C8118.89 (18)C22—C23—C24120.0 (2)
C7—C8—C9126.23 (18)C23—C24—C25119.0 (2)
C9—C8—C13115.33 (18)C24—C25—C26120.7 (2)
C7—C8—C13118.44 (18)C21—C26—C25122.4 (2)
C8—C9—C10122.40 (19)C14—C15—H15120.00
N3—C9—C10114.96 (19)C16—C15—H15120.00
N3—C9—C8122.63 (18)C15—C16—H16119.00
C9—C10—C11120.0 (2)C17—C16—H16119.00
C10—C11—C12119.1 (2)C16—C17—H17120.00
C11—C12—C13120.9 (2)C18—C17—H17120.00
C8—C13—C12122.2 (2)C17—C18—H18120.00
C3—C2—H2120.00C19—C18—H18120.00
C1—C2—H2120.00C14—C19—H19120.00
C4—C3—H3120.00C18—C19—H19120.00
C2—C3—H3120.00N5—C20—H20121.00
C3—C4—H4121.00C21—C20—H20121.00
C5—C4—H4121.00C22—C23—H23120.00
C6—C5—H5119.00C24—C23—H23120.00
C4—C5—H5119.00C23—C24—H24121.00
C5—C6—H6120.00C25—C24—H24120.00
C1—C6—H6120.00C24—C25—H25120.00
C8—C7—H7121.00C26—C25—H25120.00
N2—C7—H7121.00C21—C26—H26119.00
C9—C10—H10120.00C25—C26—H26119.00
C1—N1—N2—C7−174.85 (18)C7—C8—C13—C12−179.5 (2)
N2—N1—C1—C2174.72 (18)C9—C8—C13—C121.0 (3)
N2—N1—C1—C6−5.8 (3)C13—C8—C9—C10−1.6 (3)
N1—N2—C7—C8178.67 (17)N3—C9—C10—C11179.9 (2)
O1—N3—C9—C817.2 (3)C8—C9—C10—C111.2 (3)
O1—N3—C9—C10−161.6 (2)C9—C10—C11—C120.0 (4)
O2—N3—C9—C8−163.5 (2)C10—C11—C12—C13−0.6 (4)
O2—N3—C9—C1017.8 (3)C11—C12—C13—C80.0 (4)
N5—N4—C14—C151.6 (3)N4—C14—C15—C16179.44 (19)
N5—N4—C14—C19−179.04 (18)C19—C14—C15—C160.1 (3)
C14—N4—N5—C20177.50 (18)N4—C14—C19—C18−179.7 (2)
N4—N5—C20—C21179.35 (17)C15—C14—C19—C18−0.3 (3)
O3—N6—C22—C23152.6 (2)C14—C15—C16—C170.3 (3)
O4—N6—C22—C21153.5 (2)C15—C16—C17—C18−0.4 (4)
O3—N6—C22—C21−27.2 (3)C16—C17—C18—C190.2 (4)
O4—N6—C22—C23−26.7 (3)C17—C18—C19—C140.1 (3)
C6—C1—C2—C3−1.0 (3)N5—C20—C21—C22169.55 (19)
N1—C1—C6—C5−178.38 (19)N5—C20—C21—C26−11.8 (3)
N1—C1—C2—C3178.5 (2)C20—C21—C22—N6−0.5 (3)
C2—C1—C6—C51.1 (3)C20—C21—C22—C23179.7 (2)
C1—C2—C3—C40.3 (3)C26—C21—C22—N6−179.12 (18)
C2—C3—C4—C50.4 (3)C26—C21—C22—C231.1 (3)
C3—C4—C5—C6−0.3 (3)C20—C21—C26—C25−179.8 (2)
C4—C5—C6—C1−0.5 (3)C22—C21—C26—C25−1.0 (3)
N2—C7—C8—C9−167.98 (19)N6—C22—C23—C24179.8 (2)
N2—C7—C8—C1312.6 (3)C21—C22—C23—C24−0.3 (3)
C7—C8—C9—N30.3 (3)C22—C23—C24—C25−0.5 (3)
C7—C8—C9—C10178.9 (2)C23—C24—C25—C260.5 (4)
C13—C8—C9—N3179.78 (18)C24—C25—C26—C210.3 (3)
D—H···AD—HH···AD···AD—H···A
C7—H7···O10.932.242.773 (3)116
C20—H20···O30.932.272.788 (3)115
N1—H1···O3i0.862.423.242 (2)161
N4—H4A···O1ii0.862.393.207 (2)158
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7⋯O10.932.242.773 (3)116
C20—H20⋯O30.932.272.788 (3)115
N1—H1⋯O3i0.862.423.242 (2)161
N4—H4A⋯O1ii0.862.393.207 (2)158

Symmetry codes: (i) ; (ii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  (E)-2,3-Dimethyl-N-(2-nitro-benzyl-idene)aniline.

Authors:  M Nawaz Tahir; Muhammad Ilyas Tariq; Shahbaz Ahmad; Muhammad Sarfraz; Abdul Qayyum Ather
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

3.  (E)-1-(4-Meth-oxy-benzyl-idene)-2-phenyl-hydrazine.

Authors:  Muhammad Mufakkar; M Nawaz Tahir; Muhammad Ilyas Tariq; Shahbaz Ahmad; Muhammad Sarfraz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-03

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  2 in total

1.  (E)-1-(4-Chloro-benzyl-idene)-2-phenyl-hydrazine.

Authors:  M Nawaz Tahir; Muhammad Ilyas Tariq; Riaz H Tariq; Muhammad Sarfraz
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-27

2.  Crystal structure and Hirshfeld surface analysis of methyl 4-[(E)-2-(5-bromo-2-meth-oxy-benzyl-idene)hydrazin-yl]-3-nitro-benzoate.

Authors:  Tanvirbanu J Malek; Sahaj A Gandhi; Vijay Barot; Mukesh Patel; Urmila H Patel
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2018-08-14
  2 in total

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