Literature DB >> 21588229

2-(2,4-Dinitro-benz-yl)pyridinium 2-hy-droxy-3,5-dinitro-benzoate.

Graham Smith, Urs D Wermuth, David J Young.   

Abstract

In the structure of the title salt, C(12)H(10)N(3)O(4) (+)·C(7)H(3)N(2)O(7) (-), the cations and the anions are linked by a single N(+)-H⋯O(carbox-yl) hydrogen bond, the discrete cation-anion unit having no inter-molecular associations other than weak cation-anion aromatic ring π-π inter-actions [ring centroid separation = 3.7320 (14) Å] and a number of weak inter-unit aromatic C-H⋯O contacts. An intramolecular C-H⋯O hydrox-yl-carboxyl hydrogen bond occurs in the anion.

Entities:  

Year:  2010        PMID: 21588229      PMCID: PMC3007337          DOI: 10.1107/S1600536810024888

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structural data on 2-(2,4-dinitro­benz­yl)pyridine and related compounds, see: Seff & Trueblood (1968 ▶); Scherl et al. (1996 ▶); Naumov et al. (2002 ▶, 2005 ▶); Smith, Wermuth & Young (2010 ▶). For some structures of 3,5-dinitro­salicylic acid salts of Lewis bases, see: Smith et al. (2002 ▶, 2003 ▶, 2007 ▶); Smith, Cotton et al. (2010 ▶).

Experimental

Crystal data

C12H10N3O4 +·C7H3N2O7 − M = 487.34 Monoclinic, a = 7.1550 (2) Å b = 21.7356 (5) Å c = 13.2080 (4) Å β = 104.424 (3)° V = 1989.34 (10) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 200 K 0.40 × 0.35 × 0.18 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.960, T max = 0.982 13759 measured reflections 3910 independent reflections 2865 reflections with I > 2σ(I) R int = 0.025

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.153 S = 1.08 3910 reflections 320 parameters H-atom parameters constrained Δρmax = 0.75 e Å−3 Δρmin = −0.32 e Å−3 Data collection: CrysAlis PRO (Oxford Diffraction, 2009 ▶); cell refinement: CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810024888/ez2219sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024888/ez2219Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H10N3O4+·C7H3N2O7F(000) = 1000
Mr = 487.34Dx = 1.627 Mg m3
Monoclinic, P21/cMelting point: 383 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 7.1550 (2) ÅCell parameters from 6248 reflections
b = 21.7356 (5) Åθ = 3.1–28.7°
c = 13.2080 (4) ŵ = 0.14 mm1
β = 104.424 (3)°T = 200 K
V = 1989.34 (10) Å3Plate, yellow
Z = 40.40 × 0.35 × 0.18 mm
Oxford Diffraction Gemini-S CCD-detector diffractometer3910 independent reflections
Radiation source: Enhance (Mo) X-ray source2865 reflections with I > 2σ(I)
graphiteRint = 0.025
ω scansθmax = 26.0°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→5
Tmin = 0.960, Tmax = 0.982k = −26→26
13759 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.153H-atom parameters constrained
S = 1.08w = 1/[σ2(Fo2) + (0.0819P)2 + 0.673P] where P = (Fo2 + 2Fc2)/3
3910 reflections(Δ/σ)max < 0.001
320 parametersΔρmax = 0.75 e Å3
0 restraintsΔρmin = −0.32 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O211.2566 (3)0.22969 (10)0.63986 (18)0.0562 (8)
O221.1932 (4)0.18930 (12)0.48691 (19)0.0733 (10)
O410.7828 (4)0.00564 (10)0.43481 (18)0.0635 (9)
O420.6790 (3)−0.02169 (9)0.56819 (19)0.0577 (8)
N10.6649 (3)0.32238 (8)0.69232 (15)0.0274 (6)
N211.1587 (3)0.19783 (10)0.57118 (18)0.0365 (7)
N410.7462 (3)0.01652 (11)0.5177 (2)0.0458 (8)
C20.7755 (3)0.28074 (10)0.75516 (18)0.0267 (7)
C30.7361 (4)0.26743 (11)0.84941 (19)0.0316 (7)
C40.5867 (4)0.29735 (12)0.87819 (19)0.0345 (8)
C50.4801 (4)0.34101 (12)0.8133 (2)0.0376 (8)
C60.5212 (4)0.35297 (12)0.7190 (2)0.0359 (8)
C110.8856 (3)0.19180 (10)0.65949 (17)0.0250 (7)
C210.9877 (3)0.16655 (10)0.59134 (18)0.0268 (7)
C310.9395 (3)0.11127 (11)0.5400 (2)0.0322 (8)
C410.7909 (4)0.07812 (11)0.5632 (2)0.0353 (8)
C510.6845 (4)0.10000 (12)0.6292 (2)0.0359 (8)
C610.7296 (3)0.15746 (11)0.67349 (19)0.0307 (7)
C710.9381 (3)0.25231 (10)0.7169 (2)0.0308 (7)
O2A0.7053 (3)0.51546 (8)0.39374 (15)0.0389 (6)
O11A0.7728 (2)0.34274 (8)0.51916 (13)0.0363 (6)
O12A0.6246 (3)0.43376 (8)0.50643 (15)0.0404 (6)
O31A0.8926 (3)0.60447 (8)0.32114 (17)0.0482 (7)
O32A1.0404 (4)0.57457 (11)0.20856 (19)0.0703 (10)
O51A1.4121 (3)0.38998 (10)0.28140 (17)0.0514 (7)
O52A1.3387 (3)0.32069 (9)0.38239 (19)0.0536 (7)
N31A0.9667 (3)0.56457 (10)0.28107 (17)0.0388 (7)
N51A1.3139 (3)0.37048 (10)0.33857 (18)0.0375 (7)
C1A0.8825 (3)0.42179 (10)0.42470 (17)0.0254 (6)
C2A0.8508 (3)0.48139 (11)0.38128 (18)0.0276 (7)
C3A0.9808 (4)0.50221 (10)0.32341 (18)0.0293 (7)
C4A1.1287 (3)0.46614 (11)0.30776 (18)0.0296 (7)
C5A1.1555 (3)0.40898 (11)0.35306 (18)0.0278 (7)
C6A1.0358 (3)0.38671 (10)0.41266 (18)0.0268 (7)
C11A0.7494 (3)0.39730 (11)0.48798 (18)0.0294 (7)
H10.691000.328800.629000.0330*
H30.809700.238400.893700.0380*
H40.558300.287900.941400.0410*
H50.381700.362100.833000.0450*
H60.449800.382100.673800.0430*
H311.004400.097000.491800.0390*
H510.584900.076800.643500.0430*
H610.652900.173800.714200.0370*
H711.047000.245500.776300.0370*
H720.978500.281200.670500.0370*
H2A0.648000.493800.439200.0470*
H4A1.209200.480200.267200.0350*
H6A1.058900.348300.444300.0320*
U11U22U33U12U13U23
O210.0376 (11)0.0622 (13)0.0758 (15)−0.0202 (10)0.0272 (11)−0.0216 (12)
O220.0767 (17)0.0939 (18)0.0687 (15)−0.0332 (14)0.0546 (14)−0.0196 (14)
O410.0775 (17)0.0640 (14)0.0585 (14)−0.0200 (12)0.0349 (13)−0.0309 (12)
O420.0637 (14)0.0356 (11)0.0721 (15)−0.0054 (10)0.0135 (12)0.0012 (11)
N10.0292 (10)0.0257 (9)0.0297 (10)−0.0008 (8)0.0120 (9)0.0026 (8)
N210.0322 (12)0.0356 (11)0.0477 (13)−0.0004 (10)0.0212 (11)0.0017 (11)
N410.0363 (13)0.0420 (13)0.0597 (16)−0.0027 (10)0.0132 (12)−0.0135 (12)
C20.0264 (12)0.0207 (10)0.0338 (13)−0.0042 (9)0.0093 (10)−0.0031 (10)
C30.0344 (13)0.0284 (12)0.0306 (13)−0.0009 (10)0.0057 (11)0.0015 (10)
C40.0373 (14)0.0405 (14)0.0283 (13)−0.0064 (11)0.0133 (11)−0.0037 (11)
C50.0367 (14)0.0408 (14)0.0391 (14)0.0066 (12)0.0164 (12)−0.0033 (12)
C60.0341 (13)0.0337 (13)0.0412 (14)0.0074 (11)0.0121 (12)0.0054 (11)
C110.0219 (11)0.0259 (11)0.0270 (12)0.0036 (9)0.0055 (9)0.0055 (9)
C210.0223 (11)0.0304 (12)0.0289 (12)0.0020 (9)0.0087 (9)0.0049 (10)
C310.0296 (13)0.0357 (13)0.0335 (13)0.0058 (10)0.0121 (11)−0.0016 (11)
C410.0301 (13)0.0322 (13)0.0440 (15)0.0014 (10)0.0098 (11)−0.0072 (12)
C510.0292 (13)0.0363 (13)0.0455 (15)−0.0065 (11)0.0153 (12)−0.0050 (12)
C610.0277 (12)0.0289 (12)0.0393 (13)0.0007 (10)0.0158 (11)−0.0019 (11)
C710.0284 (12)0.0265 (12)0.0396 (14)−0.0002 (10)0.0123 (11)0.0002 (11)
O2A0.0345 (10)0.0364 (10)0.0512 (11)0.0054 (8)0.0209 (9)0.0012 (8)
O11A0.0406 (10)0.0372 (10)0.0350 (9)−0.0063 (8)0.0169 (8)0.0018 (8)
O12A0.0391 (10)0.0429 (10)0.0475 (11)−0.0027 (8)0.0266 (9)−0.0072 (9)
O31A0.0479 (12)0.0313 (10)0.0636 (13)0.0026 (9)0.0108 (11)0.0013 (9)
O32A0.101 (2)0.0591 (14)0.0630 (15)−0.0014 (13)0.0434 (15)0.0203 (12)
O51A0.0386 (11)0.0653 (13)0.0604 (13)0.0026 (9)0.0311 (10)−0.0076 (11)
O52A0.0403 (11)0.0374 (11)0.0861 (16)0.0093 (9)0.0215 (11)0.0020 (11)
N31A0.0385 (12)0.0389 (12)0.0385 (12)−0.0018 (10)0.0087 (10)0.0062 (10)
N51A0.0249 (11)0.0425 (13)0.0475 (13)0.0001 (9)0.0133 (10)−0.0094 (11)
C1A0.0254 (11)0.0286 (11)0.0228 (11)−0.0030 (9)0.0073 (9)−0.0043 (10)
C2A0.0258 (12)0.0325 (12)0.0255 (12)−0.0010 (10)0.0082 (10)−0.0051 (10)
C3A0.0316 (13)0.0290 (12)0.0274 (12)−0.0018 (10)0.0074 (10)0.0015 (10)
C4A0.0262 (12)0.0385 (13)0.0265 (12)−0.0069 (10)0.0113 (10)−0.0032 (11)
C5A0.0226 (11)0.0327 (12)0.0288 (12)−0.0007 (10)0.0076 (10)−0.0091 (10)
C6A0.0265 (12)0.0273 (12)0.0266 (11)−0.0024 (9)0.0065 (10)−0.0019 (10)
C11A0.0285 (12)0.0352 (13)0.0264 (12)−0.0073 (10)0.0104 (10)−0.0061 (10)
O21—N211.215 (3)C11—C611.393 (3)
O22—N211.213 (3)C11—C711.518 (3)
O41—N411.211 (3)C21—C311.381 (3)
O42—N411.235 (3)C31—C411.381 (4)
O2A—C2A1.321 (3)C41—C511.377 (4)
O11A—C11A1.253 (3)C51—C611.383 (4)
O12A—C11A1.262 (3)C3—H30.9300
O31A—N31A1.206 (3)C4—H40.9300
O32A—N31A1.222 (3)C5—H50.9300
O51A—N51A1.228 (3)C6—H60.9300
O52A—N51A1.219 (3)C31—H310.9300
O2A—H2A0.9300C51—H510.9300
N1—C61.343 (4)C61—H610.9300
N1—C21.344 (3)C71—H710.9700
N21—C211.481 (3)C71—H720.9700
N41—C411.470 (3)C1A—C6A1.377 (3)
N1—H10.9100C1A—C11A1.512 (3)
N31A—C3A1.460 (3)C1A—C2A1.412 (3)
N51A—C5A1.459 (3)C2A—C3A1.417 (4)
C2—C711.511 (3)C3A—C4A1.373 (4)
C2—C31.374 (3)C4A—C5A1.372 (3)
C3—C41.383 (4)C5A—C6A1.387 (3)
C4—C51.375 (4)C4A—H4A0.9300
C5—C61.374 (4)C6A—H6A0.9300
C11—C211.405 (3)
C2A—O2A—H2A106.00C5—C4—H4120.00
C2—N1—C6122.9 (2)C3—C4—H4120.00
O21—N21—C21118.4 (2)C6—C5—H5121.00
O22—N21—C21117.5 (2)C4—C5—H5120.00
O21—N21—O22124.1 (3)N1—C6—H6120.00
O41—N41—O42123.9 (2)C5—C6—H6120.00
O42—N41—C41117.8 (2)C41—C31—H31121.00
O41—N41—C41118.3 (2)C21—C31—H31121.00
C6—N1—H1121.00C41—C51—H51121.00
C2—N1—H1116.00C61—C51—H51121.00
O31A—N31A—O32A122.6 (2)C11—C61—H61119.00
O31A—N31A—C3A119.7 (2)C51—C61—H61119.00
O32A—N31A—C3A117.6 (2)H71—C71—H72108.00
O51A—N51A—C5A117.7 (2)C2—C71—H72109.00
O52A—N51A—C5A118.2 (2)C11—C71—H71109.00
O51A—N51A—O52A124.1 (2)C2—C71—H71109.00
C3—C2—C71124.5 (2)C11—C71—H72109.00
N1—C2—C3118.6 (2)C2A—C1A—C6A120.9 (2)
N1—C2—C71116.9 (2)C2A—C1A—C11A119.2 (2)
C2—C3—C4119.8 (2)C6A—C1A—C11A119.9 (2)
C3—C4—C5120.0 (2)O2A—C2A—C3A122.1 (2)
C4—C5—C6119.0 (3)C1A—C2A—C3A116.8 (2)
N1—C6—C5119.7 (2)O2A—C2A—C1A121.0 (2)
C61—C11—C71120.3 (2)N31A—C3A—C2A120.7 (2)
C21—C11—C71123.7 (2)C2A—C3A—C4A122.2 (2)
C21—C11—C61116.0 (2)N31A—C3A—C4A117.0 (2)
N21—C21—C11121.4 (2)C3A—C4A—C5A118.7 (2)
C11—C21—C31123.3 (2)N51A—C5A—C6A118.9 (2)
N21—C21—C31115.3 (2)C4A—C5A—C6A121.7 (2)
C21—C31—C41117.2 (2)N51A—C5A—C4A119.4 (2)
N41—C41—C51118.4 (2)C1A—C6A—C5A119.6 (2)
N41—C41—C31119.1 (2)O11A—C11A—C1A117.7 (2)
C31—C41—C51122.6 (2)O12A—C11A—C1A117.3 (2)
C41—C51—C61118.2 (2)O11A—C11A—O12A125.0 (2)
C11—C61—C51122.6 (2)C3A—C4A—H4A121.00
C2—C71—C11113.96 (18)C5A—C4A—H4A121.00
C2—C3—H3120.00C1A—C6A—H6A120.00
C4—C3—H3120.00C5A—C6A—H6A120.00
C6—N1—C2—C32.1 (3)C71—C11—C61—C51−175.1 (2)
C6—N1—C2—C71−177.0 (2)C21—C11—C71—C2160.2 (2)
C2—N1—C6—C5−1.4 (4)C61—C11—C71—C2−20.4 (3)
O21—N21—C21—C1129.4 (3)C11—C21—C31—C41−4.3 (4)
O21—N21—C21—C31−149.7 (2)N21—C21—C31—C41174.8 (2)
O22—N21—C21—C11−151.4 (2)C21—C31—C41—N41−174.5 (2)
O22—N21—C21—C3129.5 (3)C21—C31—C41—C514.2 (4)
O41—N41—C41—C31−27.8 (4)C31—C41—C51—C610.0 (4)
O41—N41—C41—C51153.4 (3)N41—C41—C51—C61178.7 (2)
O42—N41—C41—C31149.9 (2)C41—C51—C61—C11−4.5 (4)
O42—N41—C41—C51−28.8 (4)C6A—C1A—C2A—O2A−179.2 (2)
O31A—N31A—C3A—C2A24.4 (4)C6A—C1A—C2A—C3A1.4 (3)
O31A—N31A—C3A—C4A−153.3 (2)C11A—C1A—C2A—O2A−1.1 (3)
O32A—N31A—C3A—C2A−159.1 (2)C11A—C1A—C2A—C3A179.5 (2)
O32A—N31A—C3A—C4A23.2 (3)C2A—C1A—C6A—C5A−3.0 (3)
O51A—N51A—C5A—C4A−3.5 (3)C11A—C1A—C6A—C5A178.9 (2)
O51A—N51A—C5A—C6A176.6 (2)C2A—C1A—C11A—O11A175.0 (2)
O52A—N51A—C5A—C4A177.6 (2)C2A—C1A—C11A—O12A−5.8 (3)
O52A—N51A—C5A—C6A−2.3 (3)C6A—C1A—C11A—O11A−6.9 (3)
C71—C2—C3—C4178.3 (2)C6A—C1A—C11A—O12A172.3 (2)
N1—C2—C71—C11−94.0 (2)O2A—C2A—C3A—N31A4.4 (4)
C3—C2—C71—C1186.9 (3)O2A—C2A—C3A—C4A−178.0 (2)
N1—C2—C3—C4−0.8 (4)C1A—C2A—C3A—N31A−176.2 (2)
C2—C3—C4—C5−1.1 (4)C1A—C2A—C3A—C4A1.4 (3)
C3—C4—C5—C61.7 (4)N31A—C3A—C4A—C5A175.2 (2)
C4—C5—C6—N1−0.5 (4)C2A—C3A—C4A—C5A−2.5 (4)
C61—C11—C21—N21−178.8 (2)C3A—C4A—C5A—N51A−179.0 (2)
C61—C11—C21—C310.2 (3)C3A—C4A—C5A—C6A0.9 (4)
C71—C11—C21—N210.6 (3)N51A—C5A—C6A—C1A−178.2 (2)
C71—C11—C21—C31179.6 (2)C4A—C5A—C6A—C1A1.9 (4)
C21—C11—C61—C514.3 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O11A0.911.722.627 (3)172
O2A—H2A···O12A0.931.612.476 (3)152
C3—H3···O11Ai0.932.483.246 (3)140
C5—H5···O31Aii0.932.563.051 (4)114
C6—H6···O31Aii0.932.483.020 (4)117
C51—H51···O51Aiii0.932.553.137 (4)122
C61—H61···O51Aiii0.932.543.141 (3)123
C71—H72···O11A0.972.553.247 (3)129
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O11A0.911.722.627 (3)172
O2A—H2A⋯O12A0.931.612.476 (3)152
C3—H3⋯O11Ai0.932.483.246 (3)140
C5—H5⋯O31Aii0.932.563.051 (4)114
C6—H6⋯O31Aii0.932.483.020 (4)117
C51—H51⋯O51Aiii0.932.553.137 (4)122
C61—H61⋯O51Aiii0.932.543.141 (3)123
C71—H72⋯O11A0.972.553.247 (3)129

Symmetry codes: (i) ; (ii) ; (iii) .

  6 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Crystallographic characterization of the first reported crystalline form of the potent hallucinogen (R)-2-amino-1-(8-bromobenzo[1,2-b;5,4-b']difuran-4-yl)propane or 'bromodragonfly': the 1:1 anhydrous proton-transfer compound with 3,5-dinitrosalicylic acid.

Authors:  Graham Smith; Marcus S Cotton; Urs D Wermuth; Sue E Boyd
Journal:  Acta Crystallogr C       Date:  2010-04-15       Impact factor: 1.172

3.  Intramolecular nitro-assisted proton transfer in photoirradiated 2-(2',4'-dinitrobenzyl)pyridine: polarized optical spectroscopic study and electronic structure calculations.

Authors:  Pance Naumov; Kenji Sakurai; Tadahiko Ishikawa; Junichi Takahashi; Shin-ya Koshihara; Yuji Ohashi
Journal:  J Phys Chem A       Date:  2005-08-18       Impact factor: 2.781

4.  Structure of the photocolored 2-(2',4'-dinitrobenzyl)pyridine crystal: two-photon induced solid-state proton transfer with minor structural perturbation.

Authors:  Pance Naumov; Akiko Sekine; Hidehiro Uekusa; Yuji Ohashi
Journal:  J Am Chem Soc       Date:  2002-07-24       Impact factor: 15.419

5.  Bis[2-(2,4-dinitro-benz-yl)pyridinium] biphenyl-4,4'-disulfonate trihydrate.

Authors:  Graham Smith; Urs D Wermuth; David J Young
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-28

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

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