Literature DB >> 21579224

Bis[2-(2,4-dinitro-benz-yl)pyridinium] biphenyl-4,4'-disulfonate trihydrate.

Graham Smith, Urs D Wermuth, David J Young.   

Abstract

In the structure of the title salt, 2C(12)H(10)N(3)O(4) (+)·C(12)H(8)O(6)S(2) (2-)·3H(2)O, determined at 173 K, the biphenyl-4,4'-disulfonate dianions lie across crystallographic inversion centres with the sulfonate groups inter-acting head-to-head through centrosymmetric cyclic bis-(water)-bridged hydrogen-bonding associations [graph set R(4) (4)(11)], forming chains. The 2-(2,4-dinitro-benz-yl)pyridinium cations are linked to these chains through pyridinium-water N-H⋯O hydrogen bonds and a two-dimensional network is formed through water bridges between sulfonate and 2-nitro O atoms, while the structure also has weak cation-anion π-π aromatic ring inter-actions [minimum ring centroid separation = 3.8441 (13) Å].

Entities:  

Year:  2010        PMID: 21579224      PMCID: PMC2979160          DOI: 10.1107/S1600536810014819

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For structural data on 2-(2,4-dinitro­benz­yl)pyridine and related compounds, see Seff & Trueblood (1968 ▶); Scherl et al. (1996 ▶); Naumov et al. (2002 ▶, 2005 ▶). For bipyridine-4,4′-disulfonate compounds, see: Swift et al. (1998 ▶); Swift & Ward (1998 ▶); Holman & Ward (2000 ▶); Liao et al. (2001 ▶). For graph-set notation, see: Etter et al. (1990 ▶).

Experimental

Crystal data

2C12H10N3O4 +·C12H8O6S2 2−·3H2O M = 886.83 Triclinic, a = 8.3897 (3) Å b = 10.6455 (4) Å c = 11.7405 (5) Å α = 97.879 (3)° β = 96.926 (3)° γ = 112.066 (4)° V = 945.53 (7) Å3 Z = 1 Mo Kα radiation μ = 0.23 mm−1 T = 173 K 0.30 × 0.25 × 0.15 mm

Data collection

Oxford Diffraction Gemini-S CCD-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.98, T max = 0.99 8964 measured reflections 3844 independent reflections 3441 reflections with I > 2σ(I) R int = 0.020

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.104 S = 1.03 3844 reflections 296 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrysAlis CCD (Oxford Diffraction, 2008 ▶); cell refinement: CrysAlis RED (Oxford Diffraction, 2008 ▶); data reduction: CrysAlis RED; program(s) used to solve structure: SIR92 (Altomare et al., 1994 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 1999 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810014819/ng2763sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810014819/ng2763Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
2C12H10N3O4+·C12H8O6S22·3H2OZ = 1
Mr = 886.83F(000) = 460
Triclinic, P1Dx = 1.557 Mg m3
Hall symbol: -P 1Melting point: 413 K
a = 8.3897 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 10.6455 (4) ÅCell parameters from 5908 reflections
c = 11.7405 (5) Åθ = 3.0–32.3°
α = 97.879 (3)°µ = 0.23 mm1
β = 96.926 (3)°T = 173 K
γ = 112.066 (4)°Prism, colourless
V = 945.53 (7) Å30.30 × 0.25 × 0.15 mm
Oxford Diffraction Gemini-S CCD-detector diffractometer3844 independent reflections
Radiation source: Enhance (Mo) X-ray source3441 reflections with I > 2σ(I)
graphiteRint = 0.020
Detector resolution: 16.08 pixels mm-1θmax = 26.5°, θmin = 3.0°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −13→13
Tmin = 0.98, Tmax = 0.99l = −14→14
8964 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.104H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0505P)2 + 0.4454P] where P = (Fo2 + 2Fc2)/3
3844 reflections(Δ/σ)max = 0.001
296 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
O210.5436 (2)0.07535 (18)0.71892 (15)0.0487 (6)
O220.51554 (19)0.13704 (18)0.55354 (14)0.0460 (5)
O410.9552 (2)0.10842 (19)0.32892 (14)0.0548 (6)
O421.2220 (2)0.1865 (2)0.41565 (15)0.0627 (7)
N10.7507 (2)0.15288 (18)1.02586 (14)0.0291 (5)
N210.6039 (2)0.12314 (17)0.63793 (15)0.0319 (5)
N411.0680 (2)0.15615 (18)0.41645 (15)0.0350 (5)
C20.8078 (2)0.1261 (2)0.92656 (16)0.0276 (5)
C30.8089 (3)−0.0026 (2)0.89375 (18)0.0348 (6)
C40.7505 (3)−0.1008 (2)0.9630 (2)0.0403 (7)
C50.6935 (3)−0.0690 (2)1.06403 (19)0.0400 (7)
C60.6954 (3)0.0601 (2)1.09439 (18)0.0364 (7)
C110.9122 (2)0.21211 (18)0.74513 (16)0.0256 (5)
C210.7921 (2)0.16202 (18)0.63956 (16)0.0260 (5)
C310.8394 (2)0.14506 (19)0.53166 (17)0.0278 (5)
C411.0145 (2)0.17560 (19)0.53089 (16)0.0275 (5)
C511.1393 (2)0.2235 (2)0.63196 (17)0.0303 (6)
C611.0871 (2)0.2431 (2)0.73779 (17)0.0291 (6)
C710.8663 (3)0.2446 (2)0.86313 (17)0.0318 (6)
S4A0.60027 (6)0.49714 (5)0.81725 (4)0.0279 (2)
O41A0.71609 (19)0.57569 (16)0.92704 (12)0.0391 (5)
O42A0.51335 (19)0.35151 (15)0.81872 (14)0.0412 (5)
O43A0.4786 (2)0.55635 (18)0.77623 (13)0.0436 (5)
C1A0.9443 (2)0.50258 (19)0.54441 (16)0.0272 (6)
C2A0.7662 (3)0.4645 (3)0.51220 (19)0.0576 (9)
C3A0.6617 (3)0.4658 (3)0.59494 (19)0.0531 (9)
C4A0.7357 (2)0.50677 (19)0.71157 (16)0.0263 (6)
C5A0.9122 (3)0.5469 (2)0.74546 (18)0.0399 (6)
C6A1.0155 (3)0.5444 (2)0.66214 (19)0.0409 (7)
O1W0.7300 (2)0.39624 (19)1.07848 (14)0.0422 (6)
O2W0.4510 (4)0.7847 (3)0.7040 (3)0.0475 (11)0.500
H10.746 (4)0.240 (3)1.049 (2)0.059 (8)*
H30.84830−0.023800.825900.0420*
H40.75000−0.188300.940900.0480*
H50.65440−0.134201.110600.0480*
H60.658400.083801.162600.0440*
H310.757000.114400.462600.0330*
H511.256200.242100.629000.0360*
H611.171100.278200.806200.0350*
H710.967900.319200.912600.0380*
H720.773800.278000.852400.0380*
H2A0.715100.437300.433200.0690*
H3A0.541800.439000.571400.0640*
H5A0.963000.575900.824500.0480*
H6A1.135400.571600.686200.0490*
H11W0.662 (4)0.407 (3)1.127 (3)0.069 (9)*
H12W0.719 (4)0.441 (3)1.031 (3)0.062 (9)*
H21W0.460 (5)0.730 (4)0.745 (4)0.060 (10)*0.500
H22W0.515 (5)0.860 (3)0.755 (3)0.065 (10)*0.500
U11U22U33U12U13U23
O210.0343 (8)0.0630 (11)0.0535 (10)0.0155 (8)0.0225 (7)0.0261 (8)
O220.0318 (8)0.0596 (10)0.0475 (9)0.0198 (8)0.0040 (7)0.0119 (8)
O410.0577 (11)0.0678 (12)0.0295 (8)0.0162 (9)0.0131 (8)0.0011 (8)
O420.0491 (10)0.1108 (16)0.0475 (10)0.0453 (11)0.0280 (8)0.0225 (10)
N10.0249 (8)0.0370 (10)0.0239 (8)0.0107 (7)0.0051 (6)0.0052 (7)
N210.0282 (9)0.0288 (9)0.0387 (9)0.0105 (7)0.0107 (7)0.0053 (7)
N410.0446 (10)0.0357 (9)0.0341 (9)0.0210 (8)0.0187 (8)0.0131 (8)
C20.0229 (9)0.0318 (10)0.0246 (9)0.0074 (8)0.0048 (7)0.0042 (8)
C30.0401 (11)0.0317 (11)0.0320 (10)0.0133 (9)0.0092 (9)0.0057 (8)
C40.0397 (12)0.0326 (11)0.0442 (12)0.0116 (10)−0.0008 (9)0.0097 (9)
C50.0294 (11)0.0508 (13)0.0386 (12)0.0104 (10)0.0044 (9)0.0236 (10)
C60.0273 (10)0.0550 (14)0.0270 (10)0.0136 (10)0.0067 (8)0.0152 (9)
C110.0304 (10)0.0207 (9)0.0275 (9)0.0096 (8)0.0115 (7)0.0068 (7)
C210.0253 (9)0.0213 (9)0.0334 (10)0.0094 (7)0.0102 (7)0.0075 (7)
C310.0301 (10)0.0254 (9)0.0275 (9)0.0106 (8)0.0058 (7)0.0054 (7)
C410.0331 (10)0.0259 (9)0.0287 (9)0.0140 (8)0.0134 (8)0.0090 (8)
C510.0265 (10)0.0333 (10)0.0366 (11)0.0141 (8)0.0132 (8)0.0116 (8)
C610.0286 (10)0.0302 (10)0.0286 (10)0.0115 (8)0.0051 (8)0.0072 (8)
C710.0381 (11)0.0269 (10)0.0294 (10)0.0106 (9)0.0131 (8)0.0034 (8)
S4A0.0314 (3)0.0369 (3)0.0266 (2)0.0204 (2)0.0159 (2)0.0132 (2)
O41A0.0427 (8)0.0521 (9)0.0272 (7)0.0214 (7)0.0150 (6)0.0081 (6)
O42A0.0408 (8)0.0418 (9)0.0492 (9)0.0168 (7)0.0242 (7)0.0205 (7)
O43A0.0532 (9)0.0702 (11)0.0371 (8)0.0471 (9)0.0254 (7)0.0254 (8)
C1A0.0332 (10)0.0285 (10)0.0298 (10)0.0170 (8)0.0174 (8)0.0136 (8)
C2A0.0474 (14)0.127 (2)0.0247 (11)0.0570 (16)0.0166 (10)0.0264 (13)
C3A0.0385 (12)0.113 (2)0.0303 (11)0.0483 (14)0.0158 (10)0.0256 (13)
C4A0.0325 (10)0.0283 (10)0.0295 (9)0.0187 (8)0.0174 (8)0.0129 (8)
C5A0.0303 (10)0.0487 (13)0.0278 (10)0.0045 (9)0.0116 (8)−0.0068 (9)
C6A0.0241 (10)0.0476 (13)0.0370 (11)0.0014 (9)0.0144 (8)−0.0061 (10)
O1W0.0555 (10)0.0677 (11)0.0272 (8)0.0456 (9)0.0177 (7)0.0154 (8)
O2W0.0471 (19)0.0426 (18)0.0560 (15)0.0206 (15)0.0161 (15)0.0066 (15)
S4A—O42A1.4479 (16)C21—C311.381 (3)
S4A—O43A1.4558 (19)C31—C411.382 (3)
S4A—C4A1.7687 (19)C41—C511.378 (3)
S4A—O41A1.4481 (15)C51—C611.381 (3)
O21—N211.214 (2)C3—H30.9300
O22—N211.224 (2)C4—H40.9300
O41—N411.213 (2)C5—H50.9300
O42—N411.210 (3)C6—H60.9300
O1W—H11W0.88 (4)C31—H310.9300
O1W—H12W0.80 (3)C51—H510.9300
O2W—H21W0.82 (4)C61—H610.9300
O2W—H22W0.87 (3)C71—H710.9700
N1—C61.342 (3)C71—H720.9700
N1—C21.348 (2)C1A—C2A1.381 (3)
N21—C211.471 (3)C1A—C6A1.378 (3)
N41—C411.479 (3)C1A—C1Ai1.491 (3)
N1—H10.95 (3)C2A—C3A1.387 (4)
C2—C31.375 (3)C3A—C4A1.371 (3)
C2—C711.506 (3)C4A—C5A1.367 (3)
C3—C41.392 (3)C5A—C6A1.387 (3)
C4—C51.378 (3)C2A—H2A0.9300
C5—C61.365 (3)C3A—H3A0.9300
C11—C611.394 (3)C5A—H5A0.9300
C11—C711.512 (3)C6A—H6A0.9300
C11—C211.396 (3)
O43A—S4A—C4A105.78 (9)C2—C3—H3120.00
O41A—S4A—C4A106.12 (9)C4—C3—H3120.00
O41A—S4A—O42A112.56 (9)C5—C4—H4120.00
O41A—S4A—O43A113.37 (10)C3—C4—H4120.00
O42A—S4A—O43A112.51 (10)C6—C5—H5121.00
O42A—S4A—C4A105.74 (9)C4—C5—H5121.00
H11W—O1W—H12W104 (3)N1—C6—H6120.00
H21W—O2W—H22W97 (4)C5—C6—H6120.00
C2—N1—C6123.13 (19)C41—C31—H31121.00
O21—N21—O22123.47 (19)C21—C31—H31121.00
O22—N21—C21118.33 (17)C61—C51—H51121.00
O21—N21—C21118.17 (17)C41—C51—H51121.00
O42—N41—C41118.02 (17)C11—C61—H61119.00
O41—N41—O42123.59 (19)C51—C61—H61119.00
O41—N41—C41118.38 (18)H71—C71—H72107.00
C6—N1—H1117.1 (16)C2—C71—H72108.00
C2—N1—H1119.8 (16)C11—C71—H71108.00
N1—C2—C3118.39 (18)C11—C71—H72108.00
N1—C2—C71114.88 (18)C2—C71—H71108.00
C3—C2—C71126.73 (18)C1Ai—C1A—C2A121.47 (17)
C2—C3—C4119.4 (2)C1Ai—C1A—C6A121.02 (18)
C3—C4—C5120.3 (2)C2A—C1A—C6A117.51 (19)
C4—C5—C6118.71 (19)C1A—C2A—C3A121.5 (2)
N1—C6—C5120.0 (2)C2A—C3A—C4A119.8 (2)
C61—C11—C71118.98 (18)S4A—C4A—C5A120.50 (15)
C21—C11—C71124.29 (18)C3A—C4A—C5A119.8 (2)
C21—C11—C61116.55 (17)S4A—C4A—C3A119.64 (17)
C11—C21—C31123.34 (17)C4A—C5A—C6A120.1 (2)
N21—C21—C11120.82 (16)C1A—C6A—C5A121.4 (2)
N21—C21—C31115.84 (16)C1A—C2A—H2A119.00
C21—C31—C41117.06 (17)C3A—C2A—H2A119.00
N41—C41—C51119.43 (17)C4A—C3A—H3A120.00
C31—C41—C51122.50 (17)C2A—C3A—H3A120.00
N41—C41—C31118.07 (17)C4A—C5A—H5A120.00
C41—C51—C61118.54 (17)C6A—C5A—H5A120.00
C11—C61—C51121.97 (18)C1A—C6A—H6A119.00
C2—C71—C11115.69 (17)C5A—C6A—H6A119.00
O43A—S4A—C4A—C5A137.52 (17)C61—C11—C21—C31−1.2 (3)
O42A—S4A—C4A—C3A73.2 (2)C71—C11—C21—N21−6.5 (3)
O41A—S4A—C4A—C3A−167.09 (19)C71—C11—C21—C31173.82 (18)
O41A—S4A—C4A—C5A16.81 (19)C21—C11—C61—C51−1.0 (3)
O42A—S4A—C4A—C5A−102.95 (18)C71—C11—C61—C51−176.22 (18)
O43A—S4A—C4A—C3A−46.4 (2)N21—C21—C31—C41−177.51 (17)
C6—N1—C2—C71−179.2 (2)C11—C21—C31—C412.2 (3)
C6—N1—C2—C30.2 (3)C21—C31—C41—N41179.06 (17)
C2—N1—C6—C5−0.7 (3)C21—C31—C41—C51−1.2 (3)
O21—N21—C21—C11−32.8 (3)C31—C41—C51—C61−0.8 (3)
O21—N21—C21—C31146.90 (19)N41—C41—C51—C61178.96 (18)
O22—N21—C21—C31−31.1 (3)C41—C51—C61—C111.9 (3)
O22—N21—C21—C11149.17 (19)C6A—C1A—C2A—C3A−1.1 (4)
O42—N41—C41—C31178.02 (19)C1Ai—C1A—C2A—C3A178.3 (2)
O42—N41—C41—C51−1.7 (3)C2A—C1A—C6A—C5A0.7 (3)
O41—N41—C41—C51176.96 (19)C1Ai—C1A—C6A—C5A−178.72 (19)
O41—N41—C41—C31−3.3 (3)C2A—C1A—C1Ai—C2Ai−180.0 (2)
N1—C2—C71—C11−173.63 (18)C2A—C1A—C1Ai—C6Ai0.7 (3)
N1—C2—C3—C40.4 (3)C6A—C1A—C1Ai—C2Ai−0.7 (3)
C71—C2—C3—C4179.8 (2)C6A—C1A—C1Ai—C6Ai180.0 (2)
C3—C2—C71—C117.0 (3)C1A—C2A—C3A—C4A0.6 (4)
C2—C3—C4—C5−0.6 (4)C2A—C3A—C4A—S4A−175.7 (2)
C3—C4—C5—C60.1 (4)C2A—C3A—C4A—C5A0.4 (4)
C4—C5—C6—N10.5 (4)S4A—C4A—C5A—C6A175.26 (16)
C21—C11—C71—C288.6 (2)C3A—C4A—C5A—C6A−0.8 (3)
C61—C11—C71—C2−96.6 (2)C4A—C5A—C6A—C1A0.3 (3)
C61—C11—C21—N21178.55 (17)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1W0.95 (3)1.71 (3)2.655 (3)175 (3)
O1W—H11W···O43Aii0.88 (4)1.84 (4)2.716 (2)175 (3)
O1W—H12W···O41A0.80 (3)2.01 (3)2.806 (2)172 (3)
O2W—H21W···O43A0.82 (4)1.99 (4)2.761 (4)155 (4)
O2W—H22W···O21iii0.87 (3)2.32 (3)2.867 (2)124 (3)
C2A—H2A···O2Wiv0.932.463.195 (4)136
C4—H4···O41Av0.932.403.309 (3)165
C5—H5···O42Avi0.932.533.427 (3)163
C5A—H5A···O41A0.932.522.897 (3)105
C5A—H5A···O1Wvii0.932.583.232 (3)128
C6—H6···O2Wii0.932.443.316 (4)156
C6—H6···O21vi0.932.603.265 (3)129
C71—H72···O210.972.462.799 (3)100
C71—H72···O42A0.972.593.558 (3)176
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1W0.95 (3)1.71 (3)2.655 (3)175 (3)
O1W—H11W⋯O43Ai0.88 (4)1.84 (4)2.716 (2)175 (3)
O1W—H12W⋯O41A0.80 (3)2.01 (3)2.806 (2)172 (3)
O2W—H21W⋯O43A0.82 (4)1.99 (4)2.761 (4)155 (4)
O2W—H22W⋯O21ii0.87 (3)2.32 (3)2.867 (2)124 (3)

Symmetry codes: (i) ; (ii) .

  7 in total

1.  Metric Engineering of Crystalline Inclusion Compounds by Structural Mimicry This work was supported in part by the MRSEC Program of the National Science Foundation (Award Number DMR-9809364) and by the Natural Sciences and Engineering Research Council of Canada (postdoctoral fellowship for K.T.H.).

Authors: 
Journal:  Angew Chem Int Ed Engl       Date:  2000-05       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Graph-set analysis of hydrogen-bond patterns in organic crystals.

Authors:  M C Etter; J C MacDonald; J Bernstein
Journal:  Acta Crystallogr B       Date:  1990-04-01

4.  Intramolecular nitro-assisted proton transfer in photoirradiated 2-(2',4'-dinitrobenzyl)pyridine: polarized optical spectroscopic study and electronic structure calculations.

Authors:  Pance Naumov; Kenji Sakurai; Tadahiko Ishikawa; Junichi Takahashi; Shin-ya Koshihara; Yuji Ohashi
Journal:  J Phys Chem A       Date:  2005-08-18       Impact factor: 2.781

5.  Bis(beta-alaninium) biphenyl-4,4'-disulfonate.

Authors:  C Z Liao; X L Feng; J H Yao; J Cai
Journal:  Acta Crystallogr C       Date:  2001-10-12       Impact factor: 1.172

6.  Structure of the photocolored 2-(2',4'-dinitrobenzyl)pyridine crystal: two-photon induced solid-state proton transfer with minor structural perturbation.

Authors:  Pance Naumov; Akiko Sekine; Hidehiro Uekusa; Yuji Ohashi
Journal:  J Am Chem Soc       Date:  2002-07-24       Impact factor: 15.419

7.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  7 in total
  2 in total

1.  2-(2,4-Dinitro-benz-yl)pyridinium 2-hy-droxy-3,5-dinitro-benzoate.

Authors:  Graham Smith; Urs D Wermuth; David J Young
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-07-03

2.  Bis(4-carbamoylpiperidinium) biphenyl-4,4'-disulfonate.

Authors:  Graham Smith; Urs D Wermuth; David J Young
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-11-13
  2 in total

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