Literature DB >> 21588123

Dichloridobis(isoquinoline-κN)zinc(II).

Meng-Jiao Li1, Jing-Jing Nie, Duan-Jun Xu.   

Abstract

In the title compound, [ZnCl(2)(C(9)H(7)N)(2)], the Zn(II) cation is coordinated by two Cl(-) anions and two isoquinoline ligands in a distorted ZnCl(2)N(2) tetra-hedral geometry; the two isoquinoline ring systems are twisted with respect to each other at a dihedral angle of 45.72 (8)°. The parallel isoqiunoline ring systems of adjacent mol-ecules are partially overlapped, with the shorter face-to-face distance of 3.438 (19) Å indicating the existence of weak π-π stacking in the crystal structure.

Entities:  

Year:  2010        PMID: 21588123      PMCID: PMC3007211          DOI: 10.1107/S1600536810024803

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to π-π stacking, see: Deisenhofer & Michel (1989 ▶); Su & Xu (2004 ▶); Xu et al. (2007 ▶). For π-π stacking between isoquinoline ring systems in a CoII complex, see: Li et al. (2010 ▶).

Experimental

Crystal data

[ZnCl2(C9H7N)2] M = 394.58 Monoclinic, a = 7.8956 (15) Å b = 13.363 (2) Å c = 15.677 (2) Å β = 90.220 (8)° V = 1654.0 (5) Å3 Z = 4 Mo Kα radiation μ = 1.81 mm−1 T = 294 K 0.40 × 0.32 × 0.30 mm

Data collection

Rigaku R-AXIS RAPID IP diffractometer Absorption correction: multi-scan (ABSCOR; Higashi, 1995 ▶) T min = 0.788, T max = 0.862 11270 measured reflections 2975 independent reflections 1933 reflections with I > 2σ(I) R int = 0.032

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.153 S = 0.95 2975 reflections 208 parameters H-atom parameters constrained Δρmax = 1.33 e Å−3 Δρmin = −0.39 e Å−3 Data collection: PROCESS-AUTO (Rigaku, 1998 ▶); cell refinement: PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002 ▶); program(s) used to solve structure: SIR92 (Altomare et al., 1993 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810024803/hb5517sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024803/hb5517Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[ZnCl2(C9H7N)2]F(000) = 800
Mr = 394.58Dx = 1.585 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 6266 reflections
a = 7.8956 (15) Åθ = 3.3–24.6°
b = 13.363 (2) ŵ = 1.81 mm1
c = 15.677 (2) ÅT = 294 K
β = 90.220 (8)°Prism, colorless
V = 1654.0 (5) Å30.40 × 0.32 × 0.30 mm
Z = 4
Rigaku R-AXIS RAPID IP diffractometer2975 independent reflections
Radiation source: fine-focus sealed tube1933 reflections with I > 2σ(I)
graphiteRint = 0.032
Detector resolution: 10.0 pixels mm-1θmax = 25.2°, θmin = 3.3°
ω scansh = −9→9
Absorption correction: multi-scan (ABSCOR; Higashi, 1995)k = −16→15
Tmin = 0.788, Tmax = 0.862l = −18→17
11270 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.153H-atom parameters constrained
S = 0.95w = 1/[σ2(Fo2) + (0.1036P)2] where P = (Fo2 + 2Fc2)/3
2975 reflections(Δ/σ)max < 0.001
208 parametersΔρmax = 1.33 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Zn0.75125 (6)0.30754 (4)0.25278 (3)0.0408 (2)
Cl10.51169 (15)0.22275 (10)0.27066 (8)0.0597 (4)
Cl20.98654 (16)0.21580 (10)0.25609 (9)0.0616 (4)
N10.7603 (4)0.3828 (3)0.1381 (2)0.0448 (9)
N20.7615 (5)0.4115 (3)0.3490 (2)0.0466 (9)
C10.7034 (6)0.4723 (4)0.1236 (3)0.0482 (11)
H10.65500.50710.16880.058*
C20.7109 (5)0.5212 (3)0.0418 (3)0.0423 (10)
C30.6513 (6)0.6175 (4)0.0286 (3)0.0590 (13)
H30.60420.65400.07310.071*
C40.6632 (7)0.6570 (4)−0.0501 (3)0.0651 (14)
H40.62340.7216−0.05950.078*
C50.7340 (7)0.6037 (5)−0.1187 (3)0.0645 (15)
H50.74090.6337−0.17210.077*
C60.7913 (7)0.5106 (5)−0.1080 (3)0.0620 (14)
H60.83650.4755−0.15380.074*
C70.7822 (6)0.4647 (4)−0.0243 (3)0.0481 (12)
C80.8407 (6)0.3682 (4)−0.0097 (3)0.0589 (13)
H80.88630.3301−0.05360.071*
C90.8294 (6)0.3310 (4)0.0713 (3)0.0559 (12)
H90.87080.26700.08160.067*
C100.7032 (6)0.3890 (4)0.4234 (3)0.0525 (12)
H100.64850.32790.43030.063*
C110.7191 (5)0.4547 (3)0.4968 (3)0.0444 (11)
C120.6585 (7)0.4275 (4)0.5760 (3)0.0620 (14)
H120.60660.36580.58460.074*
C130.6774 (7)0.4941 (5)0.6412 (3)0.0676 (15)
H130.63750.47700.69500.081*
C140.7542 (6)0.5864 (4)0.6299 (3)0.0591 (14)
H140.76380.62970.67610.071*
C150.8152 (6)0.6148 (4)0.5537 (3)0.0582 (13)
H150.86730.67670.54730.070*
C160.7987 (5)0.5473 (3)0.4815 (3)0.0448 (11)
C170.8591 (6)0.5706 (4)0.4020 (3)0.0552 (13)
H170.91200.63160.39200.066*
C180.8402 (6)0.5027 (4)0.3381 (3)0.0551 (13)
H180.88240.51850.28450.066*
U11U22U33U12U13U23
Zn0.0544 (4)0.0332 (3)0.0347 (3)0.0000 (2)0.0035 (2)−0.0002 (2)
Cl10.0625 (8)0.0496 (8)0.0672 (8)−0.0098 (6)0.0145 (6)−0.0045 (6)
Cl20.0638 (8)0.0546 (8)0.0665 (8)0.0131 (6)0.0068 (6)−0.0011 (6)
N10.051 (2)0.042 (2)0.042 (2)−0.0036 (18)−0.0006 (16)0.0036 (17)
N20.053 (2)0.049 (2)0.037 (2)0.0060 (19)0.0019 (16)−0.0027 (18)
C10.053 (3)0.048 (3)0.043 (3)−0.004 (2)−0.002 (2)−0.006 (2)
C20.047 (2)0.043 (3)0.037 (2)−0.007 (2)−0.0001 (19)−0.007 (2)
C30.072 (3)0.050 (3)0.055 (3)0.004 (3)−0.007 (2)−0.003 (3)
C40.073 (3)0.070 (4)0.053 (3)−0.011 (3)−0.010 (3)0.012 (3)
C50.077 (4)0.082 (4)0.034 (3)−0.015 (3)−0.003 (2)0.018 (3)
C60.071 (3)0.074 (4)0.040 (3)−0.006 (3)0.002 (2)0.009 (3)
C70.048 (3)0.046 (3)0.050 (3)−0.006 (2)−0.002 (2)−0.005 (2)
C80.071 (3)0.060 (3)0.045 (3)0.004 (3)0.008 (2)−0.015 (2)
C90.071 (3)0.056 (3)0.041 (3)0.000 (3)0.009 (2)−0.002 (2)
C100.054 (3)0.057 (3)0.046 (3)0.001 (2)0.000 (2)0.001 (2)
C110.041 (2)0.044 (3)0.049 (3)0.005 (2)0.001 (2)0.005 (2)
C120.067 (3)0.061 (4)0.058 (3)−0.002 (3)0.010 (3)0.008 (3)
C130.075 (4)0.078 (4)0.049 (3)0.005 (3)−0.001 (3)−0.012 (3)
C140.069 (3)0.067 (4)0.041 (3)0.011 (3)−0.004 (2)−0.013 (3)
C150.062 (3)0.063 (3)0.050 (3)0.008 (3)−0.005 (2)−0.008 (3)
C160.042 (2)0.049 (3)0.043 (3)0.013 (2)0.0004 (19)0.012 (2)
C170.072 (3)0.038 (3)0.056 (3)−0.003 (2)0.004 (2)0.010 (2)
C180.073 (3)0.043 (3)0.050 (3)0.002 (2)−0.005 (2)−0.007 (2)
Zn—N12.062 (4)C7—C81.388 (7)
Zn—N22.052 (4)C8—C91.366 (7)
Zn—Cl12.2235 (13)C8—H80.9300
Zn—Cl22.2262 (13)C9—H90.9300
N1—C11.298 (6)C10—C111.453 (6)
N1—C91.370 (6)C10—H100.9300
N2—C101.290 (6)C11—C121.381 (7)
N2—C181.379 (6)C11—C161.409 (6)
C1—C21.441 (6)C12—C131.363 (7)
C1—H10.9300C12—H120.9300
C2—C31.385 (7)C13—C141.387 (8)
C2—C71.403 (6)C13—H130.9300
C3—C41.346 (7)C14—C151.344 (7)
C3—H30.9300C14—H140.9300
C4—C51.406 (8)C15—C161.453 (7)
C4—H40.9300C15—H150.9300
C5—C61.334 (8)C16—C171.371 (6)
C5—H50.9300C17—C181.359 (7)
C6—C71.450 (7)C17—H170.9300
C6—H60.9300C18—H180.9300
N2—Zn—N1108.05 (16)C9—C8—C7117.9 (5)
N2—Zn—Cl1106.47 (11)C9—C8—H8121.0
N1—Zn—Cl1112.99 (10)C7—C8—H8121.0
N2—Zn—Cl2108.96 (11)C8—C9—N1123.6 (5)
N1—Zn—Cl2104.91 (11)C8—C9—H9118.2
Cl1—Zn—Cl2115.26 (6)N1—C9—H9118.2
C1—N1—C9118.1 (4)N2—C10—C11123.0 (5)
C1—N1—Zn126.1 (3)N2—C10—H10118.5
C9—N1—Zn115.8 (3)C11—C10—H10118.5
C10—N2—C18118.7 (4)C12—C11—C16122.8 (5)
C10—N2—Zn119.6 (4)C12—C11—C10121.6 (5)
C18—N2—Zn121.6 (3)C16—C11—C10115.6 (4)
N1—C1—C2123.9 (4)C13—C12—C11117.7 (5)
N1—C1—H1118.1C13—C12—H12121.2
C2—C1—H1118.1C11—C12—H12121.2
C3—C2—C7121.8 (4)C12—C13—C14122.1 (5)
C3—C2—C1122.6 (4)C12—C13—H13118.9
C7—C2—C1115.6 (4)C14—C13—H13118.9
C4—C3—C2118.4 (5)C15—C14—C13121.5 (5)
C4—C3—H3120.8C15—C14—H14119.2
C2—C3—H3120.8C13—C14—H14119.2
C3—C4—C5122.1 (5)C14—C15—C16119.1 (5)
C3—C4—H4118.9C14—C15—H15120.5
C5—C4—H4118.9C16—C15—H15120.5
C6—C5—C4120.8 (5)C17—C16—C11120.7 (5)
C6—C5—H5119.6C17—C16—C15122.5 (5)
C4—C5—H5119.6C11—C16—C15116.8 (4)
C5—C6—C7119.3 (5)C18—C17—C16118.7 (5)
C5—C6—H6120.3C18—C17—H17120.6
C7—C6—H6120.3C16—C17—H17120.6
C8—C7—C2120.8 (4)C17—C18—N2123.2 (5)
C8—C7—C6121.7 (5)C17—C18—H18118.4
C2—C7—C6117.5 (5)N2—C18—H18118.4
Table 1

Selected bond lengths (Å)

Zn—N12.062 (4)
Zn—N22.052 (4)
Zn—Cl12.2235 (13)
Zn—Cl22.2262 (13)
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Intramolecular pi-pi stacking in diaquabis(2-hydroxybenzoato-kappaO)bis(1,10-phenanthroline-kappa2N,N')strontium(II).

Authors:  Duan-Jun Xu; Bing-Yu Zhang; Jian-Rong Su; Jing-Jing Nie
Journal:  Acta Crystallogr C       Date:  2007-11-30       Impact factor: 1.172

Review 3.  Nobel lecture. The photosynthetic reaction centre from the purple bacterium Rhodopseudomonas viridis.

Authors:  J Deisenhofer; H Michel
Journal:  EMBO J       Date:  1989-08       Impact factor: 11.598

4.  catena-Poly[[diaqua-bis-(isoquinoline-κN)cobalt(II)]-μ-succinato-κO:O].

Authors:  Meng-Jiao Li; Jing-Jing Nie; Duan-Jun Xu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-26

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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