Literature DB >> 21588054

Methyl 2-[(4-chloro-2-meth-oxy-5-oxo-2,5-dihydro-furan-3-yl)amino]-acetate.

Yang-Qing Mo1, Zhao-Yang Wang, Jian-Hua Fu, Hua-Cai Fang.   

Abstract

The title compound, C(8)H(10)ClNO(5), was obtained via a tandem Michael addition-elimination reaction of 3,4-dichloro-5-meth-oxy-furan-2(5H)-one and glycine methyl ester in the presence of triethyl-amine. The mol-ecular structure contains an approximately planar [maximum atomic deviation = 0.010 (2) Å] five-membered furan-one ring. The crystal packing is stabilized by inter-molecular N-H⋯O and weak C-H⋯O hydrogen bonding.

Entities:  

Year:  2010        PMID: 21588054      PMCID: PMC3007059          DOI: 10.1107/S160053681002461X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For biologicallly active 4-amino-2(5H)-furan­ones, see: Kimura et al. (2000 ▶); Tanoury et al. (2008 ▶). For related furan­one structures, see: Song et al. (2009b ▶); Li et al. (2009 ▶). For the synthesis, see: Song et al. (2009a ▶).

Experimental

Crystal data

C8H10ClNO5 M = 235.62 Monoclinic, a = 5.1366 (10) Å b = 9.8316 (19) Å c = 20.685 (4) Å β = 102.532 (4)° V = 1019.7 (3) Å3 Z = 4 Mo Kα radiation μ = 0.38 mm−1 T = 296 K 0.21 × 0.21 × 0.21 mm

Data collection

Bruker APEXII CCD diffractometer 3333 measured reflections 1714 independent reflections 1221 reflections with I > 2σ(I) R int = 0.019

Refinement

R[F 2 > 2σ(F 2)] = 0.036 wR(F 2) = 0.088 S = 1.05 1714 reflections 139 parameters H-atom parameters constrained Δρmax = 0.18 e Å−3 Δρmin = −0.18 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053681002461X/xu2785sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681002461X/xu2785Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H10ClNO5F(000) = 488
Mr = 235.62Dx = 1.535 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 826 reflections
a = 5.1366 (10) Åθ = 2.3–25.2°
b = 9.8316 (19) ŵ = 0.38 mm1
c = 20.685 (4) ÅT = 296 K
β = 102.532 (4)°Cubic, colorless
V = 1019.7 (3) Å30.21 × 0.21 × 0.21 mm
Z = 4
Bruker APEXII CCD diffractometer1221 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.019
graphiteθmax = 25.2°, θmin = 2.0°
φ and ω scansh = −5→6
3333 measured reflectionsk = −5→11
1714 independent reflectionsl = −24→24
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.036Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.088H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0339P)2 + 0.3573P] where P = (Fo2 + 2Fc2)/3
1714 reflections(Δ/σ)max < 0.001
139 parametersΔρmax = 0.18 e Å3
0 restraintsΔρmin = −0.18 e Å3
Experimental. 1H NMR (400 MHz, CDCl3, TMS): 3.52 (3H, s, CH, CH3), 3.82 (3H, s, CH, CH3), 4.29 (2H, s, CH, CH2), 5.75 (1H, s, CH).
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.60822 (13)0.63332 (7)0.79402 (3)0.0553 (3)
O1−0.0366 (3)0.45788 (17)0.69305 (7)0.0483 (5)
O20.1905 (4)0.39330 (18)0.79393 (8)0.0539 (5)
O3−0.0115 (3)0.51417 (18)0.58504 (7)0.0514 (5)
O40.1774 (4)0.86029 (19)0.48157 (8)0.0584 (5)
O50.5179 (4)0.7421 (2)0.54029 (8)0.0643 (6)
N10.3070 (4)0.7560 (2)0.65232 (9)0.0422 (5)
H10.45570.79140.67230.051*
C10.1684 (5)0.4711 (3)0.74761 (11)0.0430 (6)
C20.3270 (5)0.5858 (2)0.73770 (10)0.0391 (6)
C30.2222 (4)0.6466 (2)0.67961 (10)0.0370 (6)
C4−0.0206 (5)0.5655 (3)0.64653 (11)0.0431 (6)
H4−0.17880.62340.64220.052*
C50.2212 (6)0.4363 (3)0.58209 (12)0.0557 (7)
H5A0.23450.36030.61180.084*
H5B0.37670.49250.59480.084*
H5C0.20830.40390.53770.084*
C60.1683 (5)0.8198 (3)0.59157 (11)0.0437 (6)
H6A0.14980.91620.59930.052*
H6B−0.00920.78130.57850.052*
C70.3126 (5)0.8008 (2)0.53614 (11)0.0406 (6)
C80.2996 (7)0.8523 (3)0.42456 (13)0.0732 (9)
H8A0.28230.76140.40720.110*
H8B0.48510.87550.43780.110*
H8C0.21220.91460.39110.110*
U11U22U33U12U13U23
Cl10.0510 (4)0.0741 (5)0.0358 (3)−0.0075 (3)−0.0018 (3)−0.0010 (3)
O10.0403 (11)0.0567 (11)0.0465 (9)−0.0055 (8)0.0062 (7)0.0025 (9)
O20.0549 (12)0.0595 (12)0.0498 (10)0.0069 (9)0.0166 (8)0.0126 (9)
O30.0497 (12)0.0609 (12)0.0378 (9)0.0078 (9)−0.0033 (7)−0.0068 (8)
O40.0615 (13)0.0742 (13)0.0422 (9)0.0274 (10)0.0172 (8)0.0172 (9)
O50.0448 (12)0.0992 (16)0.0502 (10)0.0270 (11)0.0129 (8)0.0102 (10)
N10.0366 (12)0.0530 (13)0.0352 (10)−0.0009 (10)0.0041 (8)0.0014 (10)
C10.0370 (15)0.0543 (16)0.0393 (13)0.0080 (12)0.0119 (10)−0.0011 (13)
C20.0365 (14)0.0498 (15)0.0305 (12)0.0000 (11)0.0061 (9)−0.0013 (11)
C30.0323 (14)0.0465 (14)0.0332 (12)0.0073 (11)0.0094 (9)−0.0029 (11)
C40.0369 (15)0.0519 (16)0.0389 (13)0.0040 (11)0.0045 (10)0.0006 (12)
C50.0641 (19)0.0567 (17)0.0443 (14)0.0112 (14)0.0074 (12)−0.0074 (13)
C60.0427 (16)0.0466 (15)0.0422 (13)0.0086 (12)0.0099 (11)0.0054 (11)
C70.0382 (16)0.0427 (14)0.0400 (13)0.0001 (12)0.0067 (11)−0.0007 (11)
C80.087 (2)0.093 (2)0.0451 (15)0.0227 (19)0.0262 (15)0.0180 (16)
Cl1—C21.712 (2)C2—C31.345 (3)
O1—C11.372 (3)C3—C41.513 (3)
O1—C41.444 (3)C4—H40.9800
O2—C11.212 (3)C5—H5A0.9600
O3—C41.378 (3)C5—H5B0.9600
O3—C51.432 (3)C5—H5C0.9600
O4—C71.326 (3)C6—C71.506 (3)
O4—C81.453 (3)C6—H6A0.9700
O5—C71.189 (3)C6—H6B0.9700
N1—C31.331 (3)C8—H8A0.9600
N1—C61.446 (3)C8—H8B0.9600
N1—H10.8600C8—H8C0.9600
C1—C21.432 (4)
C1—O1—C4109.53 (18)O3—C5—H5A109.5
C4—O3—C5115.52 (18)O3—C5—H5B109.5
C7—O4—C8115.4 (2)H5A—C5—H5B109.5
C3—N1—C6125.0 (2)O3—C5—H5C109.5
C3—N1—H1117.5H5A—C5—H5C109.5
C6—N1—H1117.5H5B—C5—H5C109.5
O2—C1—O1121.0 (2)N1—C6—C7112.1 (2)
O2—C1—C2130.7 (2)N1—C6—H6A109.2
O1—C1—C2108.4 (2)C7—C6—H6A109.2
C3—C2—C1110.4 (2)N1—C6—H6B109.2
C3—C2—Cl1127.0 (2)C7—C6—H6B109.2
C1—C2—Cl1122.65 (18)H6A—C6—H6B107.9
N1—C3—C2129.3 (2)O5—C7—O4124.6 (2)
N1—C3—C4123.20 (19)O5—C7—C6125.5 (2)
C2—C3—C4107.5 (2)O4—C7—C6109.9 (2)
O3—C4—O1111.4 (2)O4—C8—H8A109.5
O3—C4—C3114.9 (2)O4—C8—H8B109.5
O1—C4—C3104.20 (17)H8A—C8—H8B109.5
O3—C4—H4108.7O4—C8—H8C109.5
O1—C4—H4108.7H8A—C8—H8C109.5
C3—C4—H4108.7H8B—C8—H8C109.5
C4—O1—C1—O2178.2 (2)C5—O3—C4—C352.9 (3)
C4—O1—C1—C2−1.2 (2)C1—O1—C4—O3124.6 (2)
O2—C1—C2—C3−177.5 (2)C1—O1—C4—C30.2 (2)
O1—C1—C2—C31.9 (3)N1—C3—C4—O357.7 (3)
O2—C1—C2—Cl12.5 (4)C2—C3—C4—O3−121.2 (2)
O1—C1—C2—Cl1−178.19 (16)N1—C3—C4—O1179.8 (2)
C6—N1—C3—C2−175.1 (2)C2—C3—C4—O11.0 (2)
C6—N1—C3—C46.3 (3)C3—N1—C6—C7−110.6 (3)
C1—C2—C3—N1179.5 (2)C8—O4—C7—O5−1.1 (4)
Cl1—C2—C3—N1−0.4 (4)C8—O4—C7—C6178.5 (2)
C1—C2—C3—C4−1.7 (3)N1—C6—C7—O5−0.7 (4)
Cl1—C2—C3—C4178.33 (18)N1—C6—C7—O4179.7 (2)
C5—O3—C4—O1−65.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.862.062.911 (3)171
C6—H6B···O5ii0.972.423.366 (3)166
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.862.062.911 (3)171
C6—H6B⋯O5ii0.972.423.366 (3)166

Symmetry codes: (i) ; (ii) .

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