Literature DB >> 21588038

8-Methyl-2-[4-(trifluoro-meth-yl)phen-yl]-8H-pyrazolo-[4,3-e][1,2,4]triazolo[1,5-c]pyrimidin-5-amine methanol disolvate.

Anton V Dolzhenko, Geok Kheng Tan, Anna V Dolzhenko, Lip Lin Koh, Giorgia Pastorin.   

Abstract

In the title compound, C(14)H(10)F(3)N(7)·2CH(4)O, the heterocyclic ring system is essentially planar (r.m.s. deviation = 0.009 Å) and makes a dihedral angle of 6.91 (8)° with the attached benzene ring. In the crystal, the main mol-ecules form centrosymmetric R(2) (2)(8) dimers via pairs of N-H⋯N hydrogen bonds between the amino groups and pyrimidine N atoms. One of the independent methanol mol-ecules and its inversion equivalent are linked to the dimers via O-H⋯N and N-H⋯O hydrogen bonds, forming R(4) (4)(16) graph-set motifs. The dimers along with the hydrogen-bonded methanol mol-ecules are stacked along the a axis, with π-π inter-actions between the pyrazole and triazole rings [centroid-centroid distance = 3.4953 (10) Å].

Entities:  

Year:  2010        PMID: 21588038      PMCID: PMC3007048          DOI: 10.1107/S1600536810024591

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For reviews on pyrazolo­[4,3-e][1,2,4]triazolo[1,5-c]pyrimidine adenosine receptor antagonists, see: Baraldi et al. (2006 ▶); Cacciari et al. (2007 ▶). For the general method used for the synthesis of the title compound, see: Dolzhenko et al. (2009 ▶); Cheong et al. (2010 ▶). For the crystal structures of related pyrazolo­[4,3-e][1,2,4]triazolo[1,5-c]pyrimidines, see: Ferretti et al. (2006 ▶); Mezheritsky et al. (2004 ▶); Tyurin et al. (2005 ▶); Xiao & Shi (2007 ▶). For graph-set analysis of hydrogen bonding, see: Bernstein et al. (1995 ▶).

Experimental

Crystal data

C14H10F3N7·2CH4O M = 397.37 Monoclinic, a = 4.6179 (3) Å b = 17.1149 (10) Å c = 22.7627 (13) Å β = 94.323 (1)° V = 1793.93 (19) Å3 Z = 4 Mo Kα radiation μ = 0.12 mm−1 T = 223 K 0.58 × 0.32 × 0.12 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2001 ▶) T min = 0.932, T max = 0.985 12385 measured reflections 4076 independent reflections 3538 reflections with I > 2σ(I) R int = 0.027

Refinement

R[F 2 > 2σ(F 2)] = 0.054 wR(F 2) = 0.145 S = 1.05 4076 reflections 266 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.35 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810024591/ci5111sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810024591/ci5111Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C14H10F3N7·2CH4OF(000) = 824
Mr = 397.37Dx = 1.471 Mg m3
Monoclinic, P21/nMelting point: 573 K
Hall symbol: -P 2ynMo Kα radiation, λ = 0.71073 Å
a = 4.6179 (3) ÅCell parameters from 4421 reflections
b = 17.1149 (10) Åθ = 2.4–27.2°
c = 22.7627 (13) ŵ = 0.12 mm1
β = 94.323 (1)°T = 223 K
V = 1793.93 (19) Å3Block, colourless
Z = 40.58 × 0.32 × 0.12 mm
Bruker SMART APEX CCD diffractometer4076 independent reflections
Radiation source: fine-focus sealed tube3538 reflections with I > 2σ(I)
graphiteRint = 0.027
φ and ω scansθmax = 27.5°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Sheldrick, 2001)h = −5→5
Tmin = 0.932, Tmax = 0.985k = −21→22
12385 measured reflectionsl = −23→29
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.054Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0746P)2 + 0.7421P] where P = (Fo2 + 2Fc2)/3
4076 reflections(Δ/σ)max = 0.001
266 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1S0.5063 (3)0.68580 (11)0.08136 (7)0.0581 (4)
H1S0.45070.68820.04590.087*
C1S0.8079 (5)0.68768 (18)0.08766 (13)0.0684 (7)
H1S10.87350.74150.08870.103*
H1S20.88520.66110.05460.103*
H1S30.87560.66170.12400.103*
C2S0.1594 (6)0.15803 (13)0.27649 (11)0.0581 (6)
H2S10.20280.19170.31030.087*
H2S20.17790.10380.28870.087*
H2S3−0.03740.16780.26020.087*
F11.4952 (3)0.39342 (8)0.43457 (6)0.0616 (4)
F21.2039 (3)0.48312 (8)0.45616 (5)0.0550 (4)
F31.5562 (3)0.50993 (9)0.40469 (6)0.0642 (4)
N1−0.3122 (3)0.23144 (9)0.07561 (7)0.0362 (3)
N2−0.2997 (3)0.29563 (9)0.04026 (7)0.0375 (4)
N3−0.0193 (3)0.41222 (8)0.04749 (6)0.0365 (4)
N40.3019 (3)0.41895 (8)0.13254 (6)0.0296 (3)
N50.5146 (3)0.45421 (8)0.16847 (6)0.0309 (3)
N60.3934 (3)0.33542 (8)0.20487 (6)0.0286 (3)
N70.2815 (4)0.51915 (10)0.06445 (8)0.0461 (4)
H7A0.402 (5)0.5454 (13)0.0863 (10)0.044 (6)*
H7B0.204 (5)0.5402 (14)0.0312 (11)0.052 (6)*
C1−0.1317 (4)0.23497 (10)0.12400 (8)0.0343 (4)
H1−0.10810.19710.15390.041*
C20.0145 (4)0.30557 (9)0.12153 (7)0.0301 (4)
C3−0.0985 (4)0.34097 (10)0.06864 (7)0.0322 (4)
C40.1813 (4)0.45034 (10)0.07964 (7)0.0336 (4)
C50.2331 (4)0.34778 (9)0.15530 (7)0.0276 (3)
C60.5597 (4)0.40191 (9)0.21105 (7)0.0269 (3)
C70.7738 (3)0.41460 (9)0.26155 (7)0.0274 (3)
C80.9154 (4)0.48630 (10)0.26875 (7)0.0326 (4)
H80.87860.52610.24070.039*
C91.1098 (4)0.49892 (10)0.31706 (8)0.0343 (4)
H91.20410.54740.32210.041*
C101.1650 (4)0.43965 (10)0.35808 (7)0.0307 (4)
C111.0299 (4)0.36786 (10)0.35067 (8)0.0343 (4)
H111.07100.32770.37820.041*
C120.8337 (4)0.35550 (10)0.30243 (8)0.0331 (4)
H120.74070.30680.29740.040*
C131.3561 (4)0.45625 (11)0.41268 (8)0.0368 (4)
C14−0.5043 (5)0.16731 (12)0.05670 (10)0.0464 (5)
H14A−0.42410.13960.02450.070*
H14B−0.69400.18790.04360.070*
H14C−0.52290.13170.08940.070*
O2S0.3553 (4)0.17366 (9)0.23347 (8)0.0626 (5)
H2S0.38190.22150.23140.094*
U11U22U33U12U13U23
O1S0.0507 (9)0.0792 (12)0.0434 (8)−0.0125 (8)−0.0029 (7)−0.0038 (8)
C1S0.0505 (14)0.0805 (18)0.0727 (17)0.0068 (12)−0.0050 (12)−0.0207 (14)
C2S0.0740 (16)0.0445 (12)0.0554 (13)0.0039 (11)0.0027 (12)0.0023 (10)
F10.0664 (9)0.0601 (8)0.0537 (8)0.0231 (7)−0.0252 (6)−0.0033 (6)
F20.0506 (7)0.0806 (9)0.0333 (6)0.0123 (6)0.0006 (5)−0.0145 (6)
F30.0544 (8)0.0857 (10)0.0502 (7)−0.0294 (7)−0.0117 (6)0.0062 (7)
N10.0395 (8)0.0307 (8)0.0381 (8)−0.0050 (6)0.0010 (6)−0.0035 (6)
N20.0428 (9)0.0336 (8)0.0348 (8)−0.0033 (6)−0.0047 (6)−0.0025 (6)
N30.0491 (9)0.0286 (7)0.0300 (7)−0.0014 (6)−0.0081 (6)0.0023 (6)
N40.0391 (8)0.0237 (7)0.0254 (7)−0.0008 (5)−0.0027 (5)−0.0003 (5)
N50.0385 (8)0.0260 (7)0.0273 (7)−0.0014 (6)−0.0036 (6)−0.0018 (5)
N60.0343 (7)0.0250 (7)0.0264 (7)0.0006 (5)0.0011 (5)0.0003 (5)
N70.0665 (12)0.0316 (8)0.0369 (9)−0.0117 (8)−0.0177 (8)0.0086 (7)
C10.0389 (9)0.0310 (9)0.0332 (9)−0.0026 (7)0.0030 (7)−0.0004 (7)
C20.0350 (9)0.0278 (8)0.0274 (8)0.0001 (6)0.0019 (6)−0.0020 (6)
C30.0382 (9)0.0286 (8)0.0292 (8)0.0018 (7)−0.0014 (7)−0.0029 (6)
C40.0441 (10)0.0277 (8)0.0279 (8)0.0018 (7)−0.0037 (7)0.0018 (6)
C50.0335 (8)0.0232 (7)0.0264 (7)0.0026 (6)0.0040 (6)−0.0013 (6)
C60.0322 (8)0.0234 (7)0.0253 (7)0.0024 (6)0.0031 (6)−0.0008 (6)
C70.0295 (8)0.0277 (8)0.0252 (7)0.0032 (6)0.0029 (6)−0.0008 (6)
C80.0402 (9)0.0272 (8)0.0299 (8)−0.0004 (7)−0.0010 (7)0.0052 (6)
C90.0374 (9)0.0300 (8)0.0349 (9)−0.0041 (7)−0.0011 (7)−0.0002 (7)
C100.0281 (8)0.0361 (9)0.0279 (8)0.0051 (7)0.0022 (6)−0.0005 (7)
C110.0398 (9)0.0312 (9)0.0314 (8)0.0042 (7)−0.0016 (7)0.0068 (7)
C120.0394 (9)0.0252 (8)0.0344 (9)−0.0010 (7)0.0000 (7)0.0021 (6)
C130.0350 (9)0.0426 (10)0.0323 (9)0.0037 (7)0.0002 (7)−0.0005 (7)
C140.0476 (11)0.0386 (10)0.0526 (12)−0.0119 (9)0.0009 (9)−0.0091 (8)
O2S0.0839 (12)0.0294 (7)0.0764 (11)0.0002 (8)0.0186 (9)0.0034 (7)
O1S—C1S1.390 (3)N7—C41.321 (2)
O1S—H1S0.83N7—H7A0.85 (2)
C1S—H1S10.97N7—H7B0.89 (2)
C1S—H1S20.97C1—C21.387 (2)
C1S—H1S30.97C1—H10.94
C2S—O2S1.408 (3)C2—C31.412 (2)
C2S—H2S10.97C2—C51.419 (2)
C2S—H2S20.97C6—C71.475 (2)
C2S—H2S30.97C7—C121.388 (2)
F1—C131.330 (2)C7—C81.394 (2)
F2—C131.338 (2)C8—C91.383 (2)
F3—C131.325 (2)C8—H80.94
N1—C11.331 (2)C9—C101.389 (2)
N1—N21.366 (2)C9—H90.94
N1—C141.456 (2)C10—C111.382 (3)
N2—C31.339 (2)C10—C131.496 (2)
N3—C41.310 (2)C11—C121.386 (2)
N3—C31.371 (2)C11—H110.94
N4—N51.3698 (19)C12—H120.94
N4—C51.370 (2)C14—H14A0.97
N4—C41.396 (2)C14—H14B0.97
N5—C61.324 (2)C14—H14C0.97
N6—C51.319 (2)O2S—H2S0.83
N6—C61.374 (2)
C1S—O1S—H1S109.5N6—C5—N4109.56 (14)
O1S—C1S—H1S1109.5N6—C5—C2135.39 (15)
O1S—C1S—H1S2109.5N4—C5—C2115.05 (14)
H1S1—C1S—H1S2109.5N5—C6—N6115.41 (14)
O1S—C1S—H1S3109.5N5—C6—C7122.01 (14)
H1S1—C1S—H1S3109.5N6—C6—C7122.58 (14)
H1S2—C1S—H1S3109.5C12—C7—C8119.65 (15)
O2S—C2S—H2S1109.5C12—C7—C6120.21 (15)
O2S—C2S—H2S2109.5C8—C7—C6120.14 (14)
H2S1—C2S—H2S2109.5C9—C8—C7120.09 (15)
O2S—C2S—H2S3109.5C9—C8—H8120.0
H2S1—C2S—H2S3109.5C7—C8—H8120.0
H2S2—C2S—H2S3109.5C8—C9—C10119.71 (16)
C1—N1—N2113.54 (14)C8—C9—H9120.1
C1—N1—C14127.47 (16)C10—C9—H9120.1
N2—N1—C14118.95 (15)C11—C10—C9120.58 (16)
C3—N2—N1103.90 (14)C11—C10—C13120.16 (16)
C4—N3—C3116.28 (14)C9—C10—C13119.11 (16)
N5—N4—C5110.01 (13)C10—C11—C12119.62 (15)
N5—N4—C4124.55 (14)C10—C11—H11120.2
C5—N4—C4125.41 (14)C12—C11—H11120.2
C6—N5—N4101.84 (13)C11—C12—C7120.34 (16)
C5—N6—C6103.18 (13)C11—C12—H12119.8
C4—N7—H7A123.1 (15)C7—C12—H12119.8
C4—N7—H7B117.2 (15)F3—C13—F1106.84 (16)
H7A—N7—H7B119 (2)F3—C13—F2105.89 (16)
N1—C1—C2106.40 (15)F1—C13—F2105.45 (15)
N1—C1—H1126.8F3—C13—C10113.04 (15)
C2—C1—H1126.8F1—C13—C10113.31 (15)
C1—C2—C3104.97 (15)F2—C13—C10111.71 (14)
C1—C2—C5138.58 (16)N1—C14—H14A109.5
C3—C2—C5116.45 (15)N1—C14—H14B109.5
N2—C3—N3122.67 (15)H14A—C14—H14B109.5
N2—C3—C2111.18 (15)N1—C14—H14C109.5
N3—C3—C2126.15 (15)H14A—C14—H14C109.5
N3—C4—N7122.99 (16)H14B—C14—H14C109.5
N3—C4—N4120.64 (15)C2S—O2S—H2S109.5
N7—C4—N4116.37 (16)
C1—N1—N2—C30.3 (2)C1—C2—C5—N60.6 (4)
C14—N1—N2—C3−177.53 (16)C3—C2—C5—N6−178.44 (18)
C5—N4—N5—C6−0.34 (17)C1—C2—C5—N4−179.5 (2)
C4—N4—N5—C6−178.42 (15)C3—C2—C5—N41.4 (2)
N2—N1—C1—C2−0.4 (2)N4—N5—C6—N60.51 (18)
C14—N1—C1—C2177.22 (17)N4—N5—C6—C7−179.41 (14)
N1—C1—C2—C30.29 (19)C5—N6—C6—N5−0.49 (19)
N1—C1—C2—C5−178.9 (2)C5—N6—C6—C7179.44 (14)
N1—N2—C3—N3179.97 (16)N5—C6—C7—C12−174.11 (16)
N1—N2—C3—C2−0.1 (2)N6—C6—C7—C126.0 (2)
C4—N3—C3—N2−179.75 (17)N5—C6—C7—C86.4 (2)
C4—N3—C3—C20.3 (3)N6—C6—C7—C8−173.47 (15)
C1—C2—C3—N2−0.1 (2)C12—C7—C8—C9−1.4 (3)
C5—C2—C3—N2179.25 (15)C6—C7—C8—C9178.09 (16)
C1—C2—C3—N3179.81 (17)C7—C8—C9—C100.5 (3)
C5—C2—C3—N3−0.8 (3)C8—C9—C10—C110.8 (3)
C3—N3—C4—N7179.18 (18)C8—C9—C10—C13−174.85 (16)
C3—N3—C4—N4−0.5 (3)C9—C10—C11—C12−1.2 (3)
N5—N4—C4—N3179.14 (16)C13—C10—C11—C12174.37 (16)
C5—N4—C4—N31.3 (3)C10—C11—C12—C70.4 (3)
N5—N4—C4—N7−0.6 (3)C8—C7—C12—C110.9 (3)
C5—N4—C4—N7−178.36 (17)C6—C7—C12—C11−178.53 (16)
C6—N6—C5—N40.23 (17)C11—C10—C13—F3154.07 (17)
C6—N6—C5—C2−179.89 (18)C9—C10—C13—F3−30.3 (2)
N5—N4—C5—N60.06 (19)C11—C10—C13—F132.3 (2)
C4—N4—C5—N6178.13 (15)C9—C10—C13—F1−152.04 (17)
N5—N4—C5—C2−179.84 (14)C11—C10—C13—F2−86.6 (2)
C4—N4—C5—C2−1.8 (2)C9—C10—C13—F289.0 (2)
D—H···AD—HH···AD···AD—H···A
O1S—H1S···N2i0.832.052.877 (2)175
O2S—H2S···N60.832.042.853 (2)165
N7—H7A···O1S0.85 (2)2.46 (2)3.050 (2)128 (2)
N7—H7B···N3i0.89 (2)2.09 (3)2.979 (2)179 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1S—H1S⋯N2i0.832.052.877 (2)175
O2S—H2S⋯N60.832.042.853 (2)165
N7—H7A⋯O1S0.85 (2)2.46 (2)3.050 (2)128 (2)
N7—H7B⋯N3i0.89 (2)2.09 (3)2.979 (2)179 (2)

Symmetry code: (i) .

  4 in total

1.  Role of strong intramolecular N-H...N hydrogen bonds in determining the conformation of adenosine-receptor antagonists.

Authors:  Valeria Ferretti; Loretta Pretto; Mojgan Aghazadeh Tabrizi; Paola Gilli
Journal:  Acta Crystallogr B       Date:  2006-07-12

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  The significance of 2-furyl ring substitution with a 2-(para-substituted) aryl group in a new series of pyrazolo-triazolo-pyrimidines as potent and highly selective hA(3) adenosine receptors antagonists: new insights into structure-affinity relationship and receptor-antagonist recognition.

Authors:  Siew Lee Cheong; Anna Dolzhenko; Sonja Kachler; Silvia Paoletta; Stephanie Federico; Barbara Cacciari; Anton Dolzhenko; Karl-Norbert Klotz; Stefano Moro; Giampiero Spalluto; Giorgia Pastorin
Journal:  J Med Chem       Date:  2010-04-22       Impact factor: 7.446

4.  Pyrazolo-triazolo-pyrimidines as adenosine receptor antagonists: A complete structure-activity profile.

Authors:  Barbara Cacciari; Chiara Bolcato; Giampiero Spalluto; Karl-Norbet Klotz; Magdalena Bacilieri; Francesca Deflorian; Stefano Moro
Journal:  Purinergic Signal       Date:  2006-11-14       Impact factor: 3.765

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.