| Literature DB >> 21588038 |
Anton V Dolzhenko, Geok Kheng Tan, Anna V Dolzhenko, Lip Lin Koh, Giorgia Pastorin.
Abstract
In the title compound, C(14)H(10)F(3)N(7)·2CH(4)O, the heterocyclic ring system is essentially planar (r.m.s. deviation = 0.009 Å) and makes a dihedral angle of 6.91 (8)° with the attached benzene ring. In the crystal, the main mol-ecules form centrosymmetric R(2) (2)(8) dimers via pairs of N-H⋯N hydrogen bonds between the amino groups and pyrimidine N atoms. One of the independent methanol mol-ecules and its inversion equivalent are linked to the dimers via O-H⋯N and N-H⋯O hydrogen bonds, forming R(4) (4)(16) graph-set motifs. The dimers along with the hydrogen-bonded methanol mol-ecules are stacked along the a axis, with π-π inter-actions between the pyrazole and triazole rings [centroid-centroid distance = 3.4953 (10) Å].Entities:
Year: 2010 PMID: 21588038 PMCID: PMC3007048 DOI: 10.1107/S1600536810024591
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C14H10F3N7·2CH4O | |
| Monoclinic, | Melting point: 573 K |
| Hall symbol: -P 2yn | Mo |
| Cell parameters from 4421 reflections | |
| θ = 2.4–27.2° | |
| µ = 0.12 mm−1 | |
| β = 94.323 (1)° | |
| Block, colourless | |
| 0.58 × 0.32 × 0.12 mm |
| Bruker SMART APEX CCD diffractometer | 4076 independent reflections |
| Radiation source: fine-focus sealed tube | 3538 reflections with |
| graphite | |
| φ and ω scans | θmax = 27.5°, θmin = 1.5° |
| Absorption correction: multi-scan ( | |
| 12385 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 4076 reflections | (Δ/σ)max = 0.001 |
| 266 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.21 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1S | 0.5063 (3) | 0.68580 (11) | 0.08136 (7) | 0.0581 (4) | |
| H1S | 0.4507 | 0.6882 | 0.0459 | 0.087* | |
| C1S | 0.8079 (5) | 0.68768 (18) | 0.08766 (13) | 0.0684 (7) | |
| H1S1 | 0.8735 | 0.7415 | 0.0887 | 0.103* | |
| H1S2 | 0.8852 | 0.6611 | 0.0546 | 0.103* | |
| H1S3 | 0.8756 | 0.6617 | 0.1240 | 0.103* | |
| C2S | 0.1594 (6) | 0.15803 (13) | 0.27649 (11) | 0.0581 (6) | |
| H2S1 | 0.2028 | 0.1917 | 0.3103 | 0.087* | |
| H2S2 | 0.1779 | 0.1038 | 0.2887 | 0.087* | |
| H2S3 | −0.0374 | 0.1678 | 0.2602 | 0.087* | |
| F1 | 1.4952 (3) | 0.39342 (8) | 0.43457 (6) | 0.0616 (4) | |
| F2 | 1.2039 (3) | 0.48312 (8) | 0.45616 (5) | 0.0550 (4) | |
| F3 | 1.5562 (3) | 0.50993 (9) | 0.40469 (6) | 0.0642 (4) | |
| N1 | −0.3122 (3) | 0.23144 (9) | 0.07561 (7) | 0.0362 (3) | |
| N2 | −0.2997 (3) | 0.29563 (9) | 0.04026 (7) | 0.0375 (4) | |
| N3 | −0.0193 (3) | 0.41222 (8) | 0.04749 (6) | 0.0365 (4) | |
| N4 | 0.3019 (3) | 0.41895 (8) | 0.13254 (6) | 0.0296 (3) | |
| N5 | 0.5146 (3) | 0.45421 (8) | 0.16847 (6) | 0.0309 (3) | |
| N6 | 0.3934 (3) | 0.33542 (8) | 0.20487 (6) | 0.0286 (3) | |
| N7 | 0.2815 (4) | 0.51915 (10) | 0.06445 (8) | 0.0461 (4) | |
| H7A | 0.402 (5) | 0.5454 (13) | 0.0863 (10) | 0.044 (6)* | |
| H7B | 0.204 (5) | 0.5402 (14) | 0.0312 (11) | 0.052 (6)* | |
| C1 | −0.1317 (4) | 0.23497 (10) | 0.12400 (8) | 0.0343 (4) | |
| H1 | −0.1081 | 0.1971 | 0.1539 | 0.041* | |
| C2 | 0.0145 (4) | 0.30557 (9) | 0.12153 (7) | 0.0301 (4) | |
| C3 | −0.0985 (4) | 0.34097 (10) | 0.06864 (7) | 0.0322 (4) | |
| C4 | 0.1813 (4) | 0.45034 (10) | 0.07964 (7) | 0.0336 (4) | |
| C5 | 0.2331 (4) | 0.34778 (9) | 0.15530 (7) | 0.0276 (3) | |
| C6 | 0.5597 (4) | 0.40191 (9) | 0.21105 (7) | 0.0269 (3) | |
| C7 | 0.7738 (3) | 0.41460 (9) | 0.26155 (7) | 0.0274 (3) | |
| C8 | 0.9154 (4) | 0.48630 (10) | 0.26875 (7) | 0.0326 (4) | |
| H8 | 0.8786 | 0.5261 | 0.2407 | 0.039* | |
| C9 | 1.1098 (4) | 0.49892 (10) | 0.31706 (8) | 0.0343 (4) | |
| H9 | 1.2041 | 0.5474 | 0.3221 | 0.041* | |
| C10 | 1.1650 (4) | 0.43965 (10) | 0.35808 (7) | 0.0307 (4) | |
| C11 | 1.0299 (4) | 0.36786 (10) | 0.35067 (8) | 0.0343 (4) | |
| H11 | 1.0710 | 0.3277 | 0.3782 | 0.041* | |
| C12 | 0.8337 (4) | 0.35550 (10) | 0.30243 (8) | 0.0331 (4) | |
| H12 | 0.7407 | 0.3068 | 0.2974 | 0.040* | |
| C13 | 1.3561 (4) | 0.45625 (11) | 0.41268 (8) | 0.0368 (4) | |
| C14 | −0.5043 (5) | 0.16731 (12) | 0.05670 (10) | 0.0464 (5) | |
| H14A | −0.4241 | 0.1396 | 0.0245 | 0.070* | |
| H14B | −0.6940 | 0.1879 | 0.0436 | 0.070* | |
| H14C | −0.5229 | 0.1317 | 0.0894 | 0.070* | |
| O2S | 0.3553 (4) | 0.17366 (9) | 0.23347 (8) | 0.0626 (5) | |
| H2S | 0.3819 | 0.2215 | 0.2314 | 0.094* |
| O1S | 0.0507 (9) | 0.0792 (12) | 0.0434 (8) | −0.0125 (8) | −0.0029 (7) | −0.0038 (8) |
| C1S | 0.0505 (14) | 0.0805 (18) | 0.0727 (17) | 0.0068 (12) | −0.0050 (12) | −0.0207 (14) |
| C2S | 0.0740 (16) | 0.0445 (12) | 0.0554 (13) | 0.0039 (11) | 0.0027 (12) | 0.0023 (10) |
| F1 | 0.0664 (9) | 0.0601 (8) | 0.0537 (8) | 0.0231 (7) | −0.0252 (6) | −0.0033 (6) |
| F2 | 0.0506 (7) | 0.0806 (9) | 0.0333 (6) | 0.0123 (6) | 0.0006 (5) | −0.0145 (6) |
| F3 | 0.0544 (8) | 0.0857 (10) | 0.0502 (7) | −0.0294 (7) | −0.0117 (6) | 0.0062 (7) |
| N1 | 0.0395 (8) | 0.0307 (8) | 0.0381 (8) | −0.0050 (6) | 0.0010 (6) | −0.0035 (6) |
| N2 | 0.0428 (9) | 0.0336 (8) | 0.0348 (8) | −0.0033 (6) | −0.0047 (6) | −0.0025 (6) |
| N3 | 0.0491 (9) | 0.0286 (7) | 0.0300 (7) | −0.0014 (6) | −0.0081 (6) | 0.0023 (6) |
| N4 | 0.0391 (8) | 0.0237 (7) | 0.0254 (7) | −0.0008 (5) | −0.0027 (5) | −0.0003 (5) |
| N5 | 0.0385 (8) | 0.0260 (7) | 0.0273 (7) | −0.0014 (6) | −0.0036 (6) | −0.0018 (5) |
| N6 | 0.0343 (7) | 0.0250 (7) | 0.0264 (7) | 0.0006 (5) | 0.0011 (5) | 0.0003 (5) |
| N7 | 0.0665 (12) | 0.0316 (8) | 0.0369 (9) | −0.0117 (8) | −0.0177 (8) | 0.0086 (7) |
| C1 | 0.0389 (9) | 0.0310 (9) | 0.0332 (9) | −0.0026 (7) | 0.0030 (7) | −0.0004 (7) |
| C2 | 0.0350 (9) | 0.0278 (8) | 0.0274 (8) | 0.0001 (6) | 0.0019 (6) | −0.0020 (6) |
| C3 | 0.0382 (9) | 0.0286 (8) | 0.0292 (8) | 0.0018 (7) | −0.0014 (7) | −0.0029 (6) |
| C4 | 0.0441 (10) | 0.0277 (8) | 0.0279 (8) | 0.0018 (7) | −0.0037 (7) | 0.0018 (6) |
| C5 | 0.0335 (8) | 0.0232 (7) | 0.0264 (7) | 0.0026 (6) | 0.0040 (6) | −0.0013 (6) |
| C6 | 0.0322 (8) | 0.0234 (7) | 0.0253 (7) | 0.0024 (6) | 0.0031 (6) | −0.0008 (6) |
| C7 | 0.0295 (8) | 0.0277 (8) | 0.0252 (7) | 0.0032 (6) | 0.0029 (6) | −0.0008 (6) |
| C8 | 0.0402 (9) | 0.0272 (8) | 0.0299 (8) | −0.0004 (7) | −0.0010 (7) | 0.0052 (6) |
| C9 | 0.0374 (9) | 0.0300 (8) | 0.0349 (9) | −0.0041 (7) | −0.0011 (7) | −0.0002 (7) |
| C10 | 0.0281 (8) | 0.0361 (9) | 0.0279 (8) | 0.0051 (7) | 0.0022 (6) | −0.0005 (7) |
| C11 | 0.0398 (9) | 0.0312 (9) | 0.0314 (8) | 0.0042 (7) | −0.0016 (7) | 0.0068 (7) |
| C12 | 0.0394 (9) | 0.0252 (8) | 0.0344 (9) | −0.0010 (7) | 0.0000 (7) | 0.0021 (6) |
| C13 | 0.0350 (9) | 0.0426 (10) | 0.0323 (9) | 0.0037 (7) | 0.0002 (7) | −0.0005 (7) |
| C14 | 0.0476 (11) | 0.0386 (10) | 0.0526 (12) | −0.0119 (9) | 0.0009 (9) | −0.0091 (8) |
| O2S | 0.0839 (12) | 0.0294 (7) | 0.0764 (11) | 0.0002 (8) | 0.0186 (9) | 0.0034 (7) |
| O1S—C1S | 1.390 (3) | N7—C4 | 1.321 (2) |
| O1S—H1S | 0.83 | N7—H7A | 0.85 (2) |
| C1S—H1S1 | 0.97 | N7—H7B | 0.89 (2) |
| C1S—H1S2 | 0.97 | C1—C2 | 1.387 (2) |
| C1S—H1S3 | 0.97 | C1—H1 | 0.94 |
| C2S—O2S | 1.408 (3) | C2—C3 | 1.412 (2) |
| C2S—H2S1 | 0.97 | C2—C5 | 1.419 (2) |
| C2S—H2S2 | 0.97 | C6—C7 | 1.475 (2) |
| C2S—H2S3 | 0.97 | C7—C12 | 1.388 (2) |
| F1—C13 | 1.330 (2) | C7—C8 | 1.394 (2) |
| F2—C13 | 1.338 (2) | C8—C9 | 1.383 (2) |
| F3—C13 | 1.325 (2) | C8—H8 | 0.94 |
| N1—C1 | 1.331 (2) | C9—C10 | 1.389 (2) |
| N1—N2 | 1.366 (2) | C9—H9 | 0.94 |
| N1—C14 | 1.456 (2) | C10—C11 | 1.382 (3) |
| N2—C3 | 1.339 (2) | C10—C13 | 1.496 (2) |
| N3—C4 | 1.310 (2) | C11—C12 | 1.386 (2) |
| N3—C3 | 1.371 (2) | C11—H11 | 0.94 |
| N4—N5 | 1.3698 (19) | C12—H12 | 0.94 |
| N4—C5 | 1.370 (2) | C14—H14A | 0.97 |
| N4—C4 | 1.396 (2) | C14—H14B | 0.97 |
| N5—C6 | 1.324 (2) | C14—H14C | 0.97 |
| N6—C5 | 1.319 (2) | O2S—H2S | 0.83 |
| N6—C6 | 1.374 (2) | ||
| C1S—O1S—H1S | 109.5 | N6—C5—N4 | 109.56 (14) |
| O1S—C1S—H1S1 | 109.5 | N6—C5—C2 | 135.39 (15) |
| O1S—C1S—H1S2 | 109.5 | N4—C5—C2 | 115.05 (14) |
| H1S1—C1S—H1S2 | 109.5 | N5—C6—N6 | 115.41 (14) |
| O1S—C1S—H1S3 | 109.5 | N5—C6—C7 | 122.01 (14) |
| H1S1—C1S—H1S3 | 109.5 | N6—C6—C7 | 122.58 (14) |
| H1S2—C1S—H1S3 | 109.5 | C12—C7—C8 | 119.65 (15) |
| O2S—C2S—H2S1 | 109.5 | C12—C7—C6 | 120.21 (15) |
| O2S—C2S—H2S2 | 109.5 | C8—C7—C6 | 120.14 (14) |
| H2S1—C2S—H2S2 | 109.5 | C9—C8—C7 | 120.09 (15) |
| O2S—C2S—H2S3 | 109.5 | C9—C8—H8 | 120.0 |
| H2S1—C2S—H2S3 | 109.5 | C7—C8—H8 | 120.0 |
| H2S2—C2S—H2S3 | 109.5 | C8—C9—C10 | 119.71 (16) |
| C1—N1—N2 | 113.54 (14) | C8—C9—H9 | 120.1 |
| C1—N1—C14 | 127.47 (16) | C10—C9—H9 | 120.1 |
| N2—N1—C14 | 118.95 (15) | C11—C10—C9 | 120.58 (16) |
| C3—N2—N1 | 103.90 (14) | C11—C10—C13 | 120.16 (16) |
| C4—N3—C3 | 116.28 (14) | C9—C10—C13 | 119.11 (16) |
| N5—N4—C5 | 110.01 (13) | C10—C11—C12 | 119.62 (15) |
| N5—N4—C4 | 124.55 (14) | C10—C11—H11 | 120.2 |
| C5—N4—C4 | 125.41 (14) | C12—C11—H11 | 120.2 |
| C6—N5—N4 | 101.84 (13) | C11—C12—C7 | 120.34 (16) |
| C5—N6—C6 | 103.18 (13) | C11—C12—H12 | 119.8 |
| C4—N7—H7A | 123.1 (15) | C7—C12—H12 | 119.8 |
| C4—N7—H7B | 117.2 (15) | F3—C13—F1 | 106.84 (16) |
| H7A—N7—H7B | 119 (2) | F3—C13—F2 | 105.89 (16) |
| N1—C1—C2 | 106.40 (15) | F1—C13—F2 | 105.45 (15) |
| N1—C1—H1 | 126.8 | F3—C13—C10 | 113.04 (15) |
| C2—C1—H1 | 126.8 | F1—C13—C10 | 113.31 (15) |
| C1—C2—C3 | 104.97 (15) | F2—C13—C10 | 111.71 (14) |
| C1—C2—C5 | 138.58 (16) | N1—C14—H14A | 109.5 |
| C3—C2—C5 | 116.45 (15) | N1—C14—H14B | 109.5 |
| N2—C3—N3 | 122.67 (15) | H14A—C14—H14B | 109.5 |
| N2—C3—C2 | 111.18 (15) | N1—C14—H14C | 109.5 |
| N3—C3—C2 | 126.15 (15) | H14A—C14—H14C | 109.5 |
| N3—C4—N7 | 122.99 (16) | H14B—C14—H14C | 109.5 |
| N3—C4—N4 | 120.64 (15) | C2S—O2S—H2S | 109.5 |
| N7—C4—N4 | 116.37 (16) | ||
| C1—N1—N2—C3 | 0.3 (2) | C1—C2—C5—N6 | 0.6 (4) |
| C14—N1—N2—C3 | −177.53 (16) | C3—C2—C5—N6 | −178.44 (18) |
| C5—N4—N5—C6 | −0.34 (17) | C1—C2—C5—N4 | −179.5 (2) |
| C4—N4—N5—C6 | −178.42 (15) | C3—C2—C5—N4 | 1.4 (2) |
| N2—N1—C1—C2 | −0.4 (2) | N4—N5—C6—N6 | 0.51 (18) |
| C14—N1—C1—C2 | 177.22 (17) | N4—N5—C6—C7 | −179.41 (14) |
| N1—C1—C2—C3 | 0.29 (19) | C5—N6—C6—N5 | −0.49 (19) |
| N1—C1—C2—C5 | −178.9 (2) | C5—N6—C6—C7 | 179.44 (14) |
| N1—N2—C3—N3 | 179.97 (16) | N5—C6—C7—C12 | −174.11 (16) |
| N1—N2—C3—C2 | −0.1 (2) | N6—C6—C7—C12 | 6.0 (2) |
| C4—N3—C3—N2 | −179.75 (17) | N5—C6—C7—C8 | 6.4 (2) |
| C4—N3—C3—C2 | 0.3 (3) | N6—C6—C7—C8 | −173.47 (15) |
| C1—C2—C3—N2 | −0.1 (2) | C12—C7—C8—C9 | −1.4 (3) |
| C5—C2—C3—N2 | 179.25 (15) | C6—C7—C8—C9 | 178.09 (16) |
| C1—C2—C3—N3 | 179.81 (17) | C7—C8—C9—C10 | 0.5 (3) |
| C5—C2—C3—N3 | −0.8 (3) | C8—C9—C10—C11 | 0.8 (3) |
| C3—N3—C4—N7 | 179.18 (18) | C8—C9—C10—C13 | −174.85 (16) |
| C3—N3—C4—N4 | −0.5 (3) | C9—C10—C11—C12 | −1.2 (3) |
| N5—N4—C4—N3 | 179.14 (16) | C13—C10—C11—C12 | 174.37 (16) |
| C5—N4—C4—N3 | 1.3 (3) | C10—C11—C12—C7 | 0.4 (3) |
| N5—N4—C4—N7 | −0.6 (3) | C8—C7—C12—C11 | 0.9 (3) |
| C5—N4—C4—N7 | −178.36 (17) | C6—C7—C12—C11 | −178.53 (16) |
| C6—N6—C5—N4 | 0.23 (17) | C11—C10—C13—F3 | 154.07 (17) |
| C6—N6—C5—C2 | −179.89 (18) | C9—C10—C13—F3 | −30.3 (2) |
| N5—N4—C5—N6 | 0.06 (19) | C11—C10—C13—F1 | 32.3 (2) |
| C4—N4—C5—N6 | 178.13 (15) | C9—C10—C13—F1 | −152.04 (17) |
| N5—N4—C5—C2 | −179.84 (14) | C11—C10—C13—F2 | −86.6 (2) |
| C4—N4—C5—C2 | −1.8 (2) | C9—C10—C13—F2 | 89.0 (2) |
| H··· | ||||
| O1S—H1S···N2i | 0.83 | 2.05 | 2.877 (2) | 175 |
| O2S—H2S···N6 | 0.83 | 2.04 | 2.853 (2) | 165 |
| N7—H7A···O1S | 0.85 (2) | 2.46 (2) | 3.050 (2) | 128 (2) |
| N7—H7B···N3i | 0.89 (2) | 2.09 (3) | 2.979 (2) | 179 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1 | 0.83 | 2.05 | 2.877 (2) | 175 |
| O2 | 0.83 | 2.04 | 2.853 (2) | 165 |
| N7—H7 | 0.85 (2) | 2.46 (2) | 3.050 (2) | 128 (2) |
| N7—H7 | 0.89 (2) | 2.09 (3) | 2.979 (2) | 179 (2) |
Symmetry code: (i) .