| Literature DB >> 21587908 |
Hoong-Kun Fun, Jia Hao Goh, Yang Liu, Yan Zhang.
Abstract
In the title phenanthrenone compound, C(18)H(13)NO(2)S, the dihydro-phenanthrene ring system is not planar, with its central ring distorted to a screw-boat conformation. The essentially planar thia-zole ring [maximum deviation = 0.005 (1) Å] is inclined at an inter-planar angle of 23.36 (5)° with respect to the mean plane through the dihydro-phenanthrene ring system. In the crystal packing, inter-molecular O-H⋯N hydrogen bonds link the mol-ecules into infinite chains along the a axis. Weak inter-molecular C-H⋯π inter-actions further stabilize the crystal packing.Entities:
Year: 2010 PMID: 21587908 PMCID: PMC3006705 DOI: 10.1107/S1600536810022439
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C18H13NO2S | |
| Orthorhombic, | Mo |
| Hall symbol: P 2c -2n | Cell parameters from 7790 reflections |
| θ = 3.1–30.1° | |
| µ = 0.23 mm−1 | |
| Block, colourless | |
| 0.33 × 0.17 × 0.17 mm |
| Bruker APEXII DUO CCD area-detector diffractometer | 3814 independent reflections |
| Radiation source: fine-focus sealed tube | 3635 reflections with |
| graphite | |
| φ and ω scans | θmax = 30.1°, θmin = 3.1° |
| Absorption correction: multi-scan ( | |
| 14577 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max < 0.001 | |
| 3814 reflections | Δρmax = 0.32 e Å−3 |
| 203 parameters | Δρmin = −0.21 e Å−3 |
| 1 restraint | Absolute structure: Flack (1983), 1674 Friedel pairs |
| Primary atom site location: structure-invariant direct methods | Flack parameter: 0.04 (5) |
| Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| S1 | 0.53518 (2) | 0.49600 (5) | 0.78827 (3) | 0.02005 (8) | |
| O1 | 0.58478 (9) | 0.98317 (13) | 0.74430 (7) | 0.0204 (2) | |
| O2 | 0.68596 (7) | 0.68224 (13) | 0.67503 (6) | 0.01555 (18) | |
| N1 | 0.36431 (8) | 0.62424 (14) | 0.72334 (7) | 0.0147 (2) | |
| C1 | 0.56431 (10) | 0.94441 (17) | 0.66980 (9) | 0.0141 (2) | |
| C2 | 0.48837 (10) | 1.05126 (17) | 0.61503 (9) | 0.0141 (2) | |
| C3 | 0.40687 (10) | 1.14942 (18) | 0.65511 (9) | 0.0175 (2) | |
| H3A | 0.4023 | 1.1531 | 0.7151 | 0.021* | |
| C4 | 0.33251 (11) | 1.24171 (19) | 0.60461 (10) | 0.0204 (3) | |
| H4A | 0.2769 | 1.3048 | 0.6307 | 0.025* | |
| C5 | 0.34165 (11) | 1.23923 (19) | 0.51504 (10) | 0.0211 (3) | |
| H5A | 0.2923 | 1.3021 | 0.4816 | 0.025* | |
| C6 | 0.42365 (10) | 1.14409 (18) | 0.47484 (9) | 0.0181 (3) | |
| H6A | 0.4289 | 1.1443 | 0.4148 | 0.022* | |
| C7 | 0.49871 (10) | 1.04759 (17) | 0.52450 (8) | 0.0145 (2) | |
| C8 | 0.59038 (10) | 0.95064 (18) | 0.48531 (8) | 0.0137 (2) | |
| C9 | 0.62580 (11) | 0.98991 (18) | 0.40142 (9) | 0.0165 (2) | |
| H9A | 0.5878 | 1.0717 | 0.3673 | 0.020* | |
| C10 | 0.71727 (10) | 0.90792 (19) | 0.36852 (9) | 0.0182 (3) | |
| H10A | 0.7404 | 0.9362 | 0.3130 | 0.022* | |
| C11 | 0.77403 (10) | 0.78396 (19) | 0.41853 (9) | 0.0178 (2) | |
| H11A | 0.8355 | 0.7303 | 0.3967 | 0.021* | |
| C12 | 0.73877 (10) | 0.74002 (18) | 0.50145 (9) | 0.0155 (2) | |
| H12A | 0.7761 | 0.6554 | 0.5345 | 0.019* | |
| C13 | 0.64729 (9) | 0.82280 (17) | 0.53514 (8) | 0.0133 (2) | |
| C14 | 0.60853 (9) | 0.77241 (17) | 0.62538 (8) | 0.0129 (2) | |
| C15 | 0.51421 (10) | 0.63447 (17) | 0.61865 (8) | 0.0141 (2) | |
| H15A | 0.4604 | 0.6844 | 0.5804 | 0.017* | |
| H15B | 0.5398 | 0.5216 | 0.5933 | 0.017* | |
| C16 | 0.46450 (9) | 0.59352 (16) | 0.70480 (8) | 0.0136 (2) | |
| C17 | 0.34056 (11) | 0.56729 (19) | 0.80632 (9) | 0.0183 (3) | |
| H17A | 0.2727 | 0.5786 | 0.8298 | 0.022* | |
| C18 | 0.42275 (12) | 0.49388 (19) | 0.85133 (10) | 0.0196 (3) | |
| H18A | 0.4188 | 0.4494 | 0.9076 | 0.024* | |
| H1O2 | 0.7346 (14) | 0.751 (3) | 0.6817 (12) | 0.021 (4)* |
| S1 | 0.01201 (13) | 0.02777 (17) | 0.02038 (16) | 0.00009 (11) | −0.00259 (13) | 0.01058 (13) |
| O1 | 0.0226 (5) | 0.0242 (5) | 0.0144 (5) | 0.0006 (4) | −0.0024 (4) | −0.0021 (4) |
| O2 | 0.0109 (4) | 0.0177 (4) | 0.0181 (4) | −0.0014 (3) | −0.0036 (3) | 0.0040 (3) |
| N1 | 0.0123 (5) | 0.0154 (5) | 0.0162 (5) | −0.0003 (4) | −0.0006 (4) | 0.0018 (4) |
| C1 | 0.0112 (5) | 0.0160 (5) | 0.0151 (6) | −0.0008 (4) | 0.0008 (4) | 0.0009 (5) |
| C2 | 0.0136 (5) | 0.0141 (6) | 0.0146 (6) | −0.0009 (4) | −0.0010 (4) | −0.0002 (4) |
| C3 | 0.0171 (6) | 0.0169 (6) | 0.0186 (6) | −0.0006 (5) | 0.0023 (5) | −0.0023 (5) |
| C4 | 0.0161 (6) | 0.0169 (6) | 0.0283 (7) | 0.0022 (5) | 0.0013 (5) | −0.0031 (5) |
| C5 | 0.0172 (6) | 0.0177 (6) | 0.0283 (7) | 0.0014 (5) | −0.0039 (5) | 0.0035 (6) |
| C6 | 0.0176 (6) | 0.0191 (6) | 0.0175 (6) | −0.0013 (5) | −0.0028 (5) | 0.0031 (5) |
| C7 | 0.0130 (5) | 0.0133 (5) | 0.0172 (7) | −0.0012 (5) | 0.0001 (5) | 0.0009 (4) |
| C8 | 0.0121 (5) | 0.0158 (6) | 0.0132 (6) | −0.0023 (4) | 0.0002 (4) | −0.0005 (4) |
| C9 | 0.0159 (6) | 0.0192 (6) | 0.0145 (6) | −0.0037 (4) | −0.0014 (5) | 0.0018 (5) |
| C10 | 0.0160 (6) | 0.0253 (7) | 0.0135 (6) | −0.0069 (5) | 0.0023 (5) | −0.0007 (5) |
| C11 | 0.0122 (5) | 0.0221 (6) | 0.0191 (6) | −0.0032 (4) | 0.0018 (5) | −0.0042 (5) |
| C12 | 0.0124 (5) | 0.0175 (6) | 0.0167 (6) | −0.0023 (4) | −0.0003 (4) | −0.0019 (4) |
| C13 | 0.0118 (5) | 0.0147 (5) | 0.0134 (6) | −0.0036 (4) | 0.0003 (4) | −0.0009 (4) |
| C14 | 0.0107 (5) | 0.0152 (5) | 0.0128 (5) | −0.0009 (4) | −0.0016 (4) | 0.0009 (4) |
| C15 | 0.0113 (5) | 0.0156 (6) | 0.0155 (6) | −0.0019 (4) | −0.0009 (4) | 0.0017 (4) |
| C16 | 0.0118 (5) | 0.0144 (5) | 0.0146 (6) | −0.0017 (4) | −0.0030 (4) | 0.0027 (4) |
| C17 | 0.0157 (6) | 0.0212 (6) | 0.0181 (7) | −0.0007 (5) | 0.0017 (5) | 0.0022 (5) |
| C18 | 0.0170 (6) | 0.0262 (7) | 0.0156 (7) | −0.0048 (5) | −0.0008 (5) | 0.0072 (5) |
| S1—C18 | 1.7164 (16) | C7—C8 | 1.4823 (18) |
| S1—C16 | 1.7217 (13) | C8—C9 | 1.4011 (18) |
| O1—C1 | 1.2140 (17) | C8—C13 | 1.4075 (18) |
| O2—C14 | 1.4041 (14) | C9—C10 | 1.3927 (19) |
| O2—H1O2 | 0.798 (19) | C9—H9A | 0.9300 |
| N1—C16 | 1.3103 (16) | C10—C11 | 1.3894 (19) |
| N1—C17 | 1.3818 (17) | C10—H10A | 0.9300 |
| C1—C2 | 1.4965 (18) | C11—C12 | 1.3942 (19) |
| C1—C14 | 1.5383 (18) | C11—H11A | 0.9300 |
| C2—C3 | 1.3961 (18) | C12—C13 | 1.3998 (17) |
| C2—C7 | 1.4060 (18) | C12—H12A | 0.9300 |
| C3—C4 | 1.393 (2) | C13—C14 | 1.5232 (17) |
| C3—H3A | 0.9300 | C14—C15 | 1.5605 (17) |
| C4—C5 | 1.390 (2) | C15—C16 | 1.5014 (18) |
| C4—H4A | 0.9300 | C15—H15A | 0.9700 |
| C5—C6 | 1.390 (2) | C15—H15B | 0.9700 |
| C5—H5A | 0.9300 | C17—C18 | 1.3562 (19) |
| C6—C7 | 1.4064 (18) | C17—H17A | 0.9300 |
| C6—H6A | 0.9300 | C18—H18A | 0.9300 |
| C18—S1—C16 | 90.30 (7) | C9—C10—H10A | 119.9 |
| C14—O2—H1O2 | 107.7 (13) | C10—C11—C12 | 119.98 (12) |
| C16—N1—C17 | 111.03 (11) | C10—C11—H11A | 120.0 |
| O1—C1—C2 | 123.35 (12) | C12—C11—H11A | 120.0 |
| O1—C1—C14 | 122.59 (12) | C11—C12—C13 | 120.21 (12) |
| C2—C1—C14 | 113.93 (11) | C11—C12—H12A | 119.9 |
| C3—C2—C7 | 121.31 (12) | C13—C12—H12A | 119.9 |
| C3—C2—C1 | 119.04 (12) | C12—C13—C8 | 120.08 (12) |
| C7—C2—C1 | 119.64 (12) | C12—C13—C14 | 119.90 (11) |
| C4—C3—C2 | 119.52 (13) | C8—C13—C14 | 120.01 (11) |
| C4—C3—H3A | 120.2 | O2—C14—C13 | 113.16 (10) |
| C2—C3—H3A | 120.2 | O2—C14—C1 | 113.02 (10) |
| C5—C4—C3 | 119.81 (13) | C13—C14—C1 | 109.04 (10) |
| C5—C4—H4A | 120.1 | O2—C14—C15 | 104.96 (10) |
| C3—C4—H4A | 120.1 | C13—C14—C15 | 109.78 (10) |
| C4—C5—C6 | 120.89 (13) | C1—C14—C15 | 106.59 (10) |
| C4—C5—H5A | 119.6 | C16—C15—C14 | 112.70 (10) |
| C6—C5—H5A | 119.6 | C16—C15—H15A | 109.1 |
| C5—C6—C7 | 120.29 (13) | C14—C15—H15A | 109.1 |
| C5—C6—H6A | 119.9 | C16—C15—H15B | 109.1 |
| C7—C6—H6A | 119.9 | C14—C15—H15B | 109.1 |
| C2—C7—C6 | 118.17 (12) | H15A—C15—H15B | 107.8 |
| C2—C7—C8 | 119.20 (11) | N1—C16—C15 | 124.01 (11) |
| C6—C7—C8 | 122.56 (12) | N1—C16—S1 | 113.74 (10) |
| C9—C8—C13 | 118.81 (12) | C15—C16—S1 | 122.24 (9) |
| C9—C8—C7 | 121.79 (12) | C18—C17—N1 | 115.57 (12) |
| C13—C8—C7 | 119.30 (11) | C18—C17—H17A | 122.2 |
| C10—C9—C8 | 120.78 (13) | N1—C17—H17A | 122.2 |
| C10—C9—H9A | 119.6 | C17—C18—S1 | 109.36 (11) |
| C8—C9—H9A | 119.6 | C17—C18—H18A | 125.3 |
| C11—C10—C9 | 120.11 (12) | S1—C18—H18A | 125.3 |
| C11—C10—H10A | 119.9 | ||
| O1—C1—C2—C3 | −26.56 (19) | C7—C8—C13—C12 | −175.24 (11) |
| C14—C1—C2—C3 | 149.37 (11) | C9—C8—C13—C14 | −177.89 (11) |
| O1—C1—C2—C7 | 154.95 (13) | C7—C8—C13—C14 | 5.58 (17) |
| C14—C1—C2—C7 | −29.12 (16) | C12—C13—C14—O2 | 16.31 (16) |
| C7—C2—C3—C4 | 1.73 (19) | C8—C13—C14—O2 | −164.51 (11) |
| C1—C2—C3—C4 | −176.73 (12) | C12—C13—C14—C1 | 143.01 (11) |
| C2—C3—C4—C5 | −1.7 (2) | C8—C13—C14—C1 | −37.82 (15) |
| C3—C4—C5—C6 | 0.7 (2) | C12—C13—C14—C15 | −100.57 (13) |
| C4—C5—C6—C7 | 0.3 (2) | C8—C13—C14—C15 | 78.60 (14) |
| C3—C2—C7—C6 | −0.76 (19) | O1—C1—C14—O2 | −8.85 (17) |
| C1—C2—C7—C6 | 177.69 (11) | C2—C1—C14—O2 | 175.19 (10) |
| C3—C2—C7—C8 | 176.32 (11) | O1—C1—C14—C13 | −135.62 (13) |
| C1—C2—C7—C8 | −5.23 (18) | C2—C1—C14—C13 | 48.41 (13) |
| C5—C6—C7—C2 | −0.27 (19) | O1—C1—C14—C15 | 105.94 (13) |
| C5—C6—C7—C8 | −177.25 (12) | C2—C1—C14—C15 | −70.03 (13) |
| C2—C7—C8—C9 | −158.44 (12) | O2—C14—C15—C16 | 64.01 (13) |
| C6—C7—C8—C9 | 18.51 (19) | C13—C14—C15—C16 | −174.07 (10) |
| C2—C7—C8—C13 | 17.98 (18) | C1—C14—C15—C16 | −56.11 (13) |
| C6—C7—C8—C13 | −165.07 (12) | C17—N1—C16—C15 | 177.95 (12) |
| C13—C8—C9—C10 | −1.71 (19) | C17—N1—C16—S1 | −0.74 (14) |
| C7—C8—C9—C10 | 174.73 (12) | C14—C15—C16—N1 | 120.47 (13) |
| C8—C9—C10—C11 | 0.73 (19) | C14—C15—C16—S1 | −60.94 (14) |
| C9—C10—C11—C12 | 0.69 (19) | C18—S1—C16—N1 | 0.76 (11) |
| C10—C11—C12—C13 | −1.11 (19) | C18—S1—C16—C15 | −177.96 (11) |
| C11—C12—C13—C8 | 0.11 (19) | C16—N1—C17—C18 | 0.32 (17) |
| C11—C12—C13—C14 | 179.28 (11) | N1—C17—C18—S1 | 0.25 (16) |
| C9—C8—C13—C12 | 1.28 (18) | C16—S1—C18—C17 | −0.54 (11) |
| Cg1 and Cg2 are the centroids of C8–C13 and C2–C7 rings, respectively. |
| H··· | ||||
| O2—H1O2···N1i | 0.80 (2) | 1.976 (19) | 2.7542 (14) | 165 (2) |
| C5—H5A···Cg1ii | 0.93 | 2.83 | 3.6508 (16) | 147 |
| C12—H12A···Cg2iii | 0.93 | 2.85 | 3.7214 (15) | 156 |
| C18—H18A···Cg1iv | 0.93 | 2.72 | 3.3301 (16) | 124 |
Hydrogen-bond geometry (Å, °)
Cg1 and Cg2 are the centroids of C8–C13 and C2–C7 rings, respectively.
| H⋯ | ||||
|---|---|---|---|---|
| O2—H1 | 0.80 (2) | 1.976 (19) | 2.7542 (14) | 165 (2) |
| C5—H5 | 0.93 | 2.83 | 3.6508 (16) | 147 |
| C12—H12 | 0.93 | 2.85 | 3.7214 (15) | 156 |
| C18—H18 | 0.93 | 2.72 | 3.3301 (16) | 124 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .