Literature DB >> 21587908

10-Hy-droxy-10-(1,3-thia-zol-2-ylmeth-yl)phenanthren-9(10H)-one.

Hoong-Kun Fun, Jia Hao Goh, Yang Liu, Yan Zhang.   

Abstract

In the title phenanthrenone compound, C(18)H(13)NO(2)S, the dihydro-phenanthrene ring system is not planar, with its central ring distorted to a screw-boat conformation. The essentially planar thia-zole ring [maximum deviation = 0.005 (1) Å] is inclined at an inter-planar angle of 23.36 (5)° with respect to the mean plane through the dihydro-phenanthrene ring system. In the crystal packing, inter-molecular O-H⋯N hydrogen bonds link the mol-ecules into infinite chains along the a axis. Weak inter-molecular C-H⋯π inter-actions further stabilize the crystal packing.

Entities:  

Year:  2010        PMID: 21587908      PMCID: PMC3006705          DOI: 10.1107/S1600536810022439

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to and applications of phenanthrenone derivatives, see: Bloom (1961 ▶); Kumagai et al. (1997 ▶); McClellan (1987 ▶); Meyer & Spengler (1905 ▶); Milko & Roithova (2009 ▶); Mustafa et al. (1956 ▶); Nel et al. (2001 ▶); Schuetzle et al. (1981 ▶); Shimada et al. (2004 ▶); Zhang et al. (2004 ▶). For ring conformations, see: Cremer & Pople (1975 ▶). For related structures, see: Jones et al. (2002 ▶); Li et al. (2003 ▶); Sun et al. (2007 ▶); Wang et al. (2003 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C18H13NO2S M = 307.35 Orthorhombic, a = 12.5623 (17) Å b = 7.3222 (10) Å c = 15.462 (2) Å V = 1422.3 (3) Å3 Z = 4 Mo Kα radiation μ = 0.23 mm−1 T = 100 K 0.33 × 0.17 × 0.17 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.926, T max = 0.962 14577 measured reflections 3814 independent reflections 3635 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.074 S = 1.03 3814 reflections 203 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.21 e Å−3 Absolute structure: Flack (1983 ▶), 1674 Friedel pairs Flack parameter: 0.04 (5) Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810022439/wn2393sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022439/wn2393Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C18H13NO2SF(000) = 640
Mr = 307.35Dx = 1.435 Mg m3
Orthorhombic, Pna21Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2c -2nCell parameters from 7790 reflections
a = 12.5623 (17) Åθ = 3.1–30.1°
b = 7.3222 (10) ŵ = 0.23 mm1
c = 15.462 (2) ÅT = 100 K
V = 1422.3 (3) Å3Block, colourless
Z = 40.33 × 0.17 × 0.17 mm
Bruker APEXII DUO CCD area-detector diffractometer3814 independent reflections
Radiation source: fine-focus sealed tube3635 reflections with I > 2σ(I)
graphiteRint = 0.028
φ and ω scansθmax = 30.1°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −17→17
Tmin = 0.926, Tmax = 0.962k = −10→9
14577 measured reflectionsl = −17→21
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.074w = 1/[σ2(Fo2) + (0.0445P)2 + 0.2177P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3814 reflectionsΔρmax = 0.32 e Å3
203 parametersΔρmin = −0.21 e Å3
1 restraintAbsolute structure: Flack (1983), 1674 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.04 (5)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.53518 (2)0.49600 (5)0.78827 (3)0.02005 (8)
O10.58478 (9)0.98317 (13)0.74430 (7)0.0204 (2)
O20.68596 (7)0.68224 (13)0.67503 (6)0.01555 (18)
N10.36431 (8)0.62424 (14)0.72334 (7)0.0147 (2)
C10.56431 (10)0.94441 (17)0.66980 (9)0.0141 (2)
C20.48837 (10)1.05126 (17)0.61503 (9)0.0141 (2)
C30.40687 (10)1.14942 (18)0.65511 (9)0.0175 (2)
H3A0.40231.15310.71510.021*
C40.33251 (11)1.24171 (19)0.60461 (10)0.0204 (3)
H4A0.27691.30480.63070.025*
C50.34165 (11)1.23923 (19)0.51504 (10)0.0211 (3)
H5A0.29231.30210.48160.025*
C60.42365 (10)1.14409 (18)0.47484 (9)0.0181 (3)
H6A0.42891.14430.41480.022*
C70.49871 (10)1.04759 (17)0.52450 (8)0.0145 (2)
C80.59038 (10)0.95064 (18)0.48531 (8)0.0137 (2)
C90.62580 (11)0.98991 (18)0.40142 (9)0.0165 (2)
H9A0.58781.07170.36730.020*
C100.71727 (10)0.90792 (19)0.36852 (9)0.0182 (3)
H10A0.74040.93620.31300.022*
C110.77403 (10)0.78396 (19)0.41853 (9)0.0178 (2)
H11A0.83550.73030.39670.021*
C120.73877 (10)0.74002 (18)0.50145 (9)0.0155 (2)
H12A0.77610.65540.53450.019*
C130.64729 (9)0.82280 (17)0.53514 (8)0.0133 (2)
C140.60853 (9)0.77241 (17)0.62538 (8)0.0129 (2)
C150.51421 (10)0.63447 (17)0.61865 (8)0.0141 (2)
H15A0.46040.68440.58040.017*
H15B0.53980.52160.59330.017*
C160.46450 (9)0.59352 (16)0.70480 (8)0.0136 (2)
C170.34056 (11)0.56729 (19)0.80632 (9)0.0183 (3)
H17A0.27270.57860.82980.022*
C180.42275 (12)0.49388 (19)0.85133 (10)0.0196 (3)
H18A0.41880.44940.90760.024*
H1O20.7346 (14)0.751 (3)0.6817 (12)0.021 (4)*
U11U22U33U12U13U23
S10.01201 (13)0.02777 (17)0.02038 (16)0.00009 (11)−0.00259 (13)0.01058 (13)
O10.0226 (5)0.0242 (5)0.0144 (5)0.0006 (4)−0.0024 (4)−0.0021 (4)
O20.0109 (4)0.0177 (4)0.0181 (4)−0.0014 (3)−0.0036 (3)0.0040 (3)
N10.0123 (5)0.0154 (5)0.0162 (5)−0.0003 (4)−0.0006 (4)0.0018 (4)
C10.0112 (5)0.0160 (5)0.0151 (6)−0.0008 (4)0.0008 (4)0.0009 (5)
C20.0136 (5)0.0141 (6)0.0146 (6)−0.0009 (4)−0.0010 (4)−0.0002 (4)
C30.0171 (6)0.0169 (6)0.0186 (6)−0.0006 (5)0.0023 (5)−0.0023 (5)
C40.0161 (6)0.0169 (6)0.0283 (7)0.0022 (5)0.0013 (5)−0.0031 (5)
C50.0172 (6)0.0177 (6)0.0283 (7)0.0014 (5)−0.0039 (5)0.0035 (6)
C60.0176 (6)0.0191 (6)0.0175 (6)−0.0013 (5)−0.0028 (5)0.0031 (5)
C70.0130 (5)0.0133 (5)0.0172 (7)−0.0012 (5)0.0001 (5)0.0009 (4)
C80.0121 (5)0.0158 (6)0.0132 (6)−0.0023 (4)0.0002 (4)−0.0005 (4)
C90.0159 (6)0.0192 (6)0.0145 (6)−0.0037 (4)−0.0014 (5)0.0018 (5)
C100.0160 (6)0.0253 (7)0.0135 (6)−0.0069 (5)0.0023 (5)−0.0007 (5)
C110.0122 (5)0.0221 (6)0.0191 (6)−0.0032 (4)0.0018 (5)−0.0042 (5)
C120.0124 (5)0.0175 (6)0.0167 (6)−0.0023 (4)−0.0003 (4)−0.0019 (4)
C130.0118 (5)0.0147 (5)0.0134 (6)−0.0036 (4)0.0003 (4)−0.0009 (4)
C140.0107 (5)0.0152 (5)0.0128 (5)−0.0009 (4)−0.0016 (4)0.0009 (4)
C150.0113 (5)0.0156 (6)0.0155 (6)−0.0019 (4)−0.0009 (4)0.0017 (4)
C160.0118 (5)0.0144 (5)0.0146 (6)−0.0017 (4)−0.0030 (4)0.0027 (4)
C170.0157 (6)0.0212 (6)0.0181 (7)−0.0007 (5)0.0017 (5)0.0022 (5)
C180.0170 (6)0.0262 (7)0.0156 (7)−0.0048 (5)−0.0008 (5)0.0072 (5)
S1—C181.7164 (16)C7—C81.4823 (18)
S1—C161.7217 (13)C8—C91.4011 (18)
O1—C11.2140 (17)C8—C131.4075 (18)
O2—C141.4041 (14)C9—C101.3927 (19)
O2—H1O20.798 (19)C9—H9A0.9300
N1—C161.3103 (16)C10—C111.3894 (19)
N1—C171.3818 (17)C10—H10A0.9300
C1—C21.4965 (18)C11—C121.3942 (19)
C1—C141.5383 (18)C11—H11A0.9300
C2—C31.3961 (18)C12—C131.3998 (17)
C2—C71.4060 (18)C12—H12A0.9300
C3—C41.393 (2)C13—C141.5232 (17)
C3—H3A0.9300C14—C151.5605 (17)
C4—C51.390 (2)C15—C161.5014 (18)
C4—H4A0.9300C15—H15A0.9700
C5—C61.390 (2)C15—H15B0.9700
C5—H5A0.9300C17—C181.3562 (19)
C6—C71.4064 (18)C17—H17A0.9300
C6—H6A0.9300C18—H18A0.9300
C18—S1—C1690.30 (7)C9—C10—H10A119.9
C14—O2—H1O2107.7 (13)C10—C11—C12119.98 (12)
C16—N1—C17111.03 (11)C10—C11—H11A120.0
O1—C1—C2123.35 (12)C12—C11—H11A120.0
O1—C1—C14122.59 (12)C11—C12—C13120.21 (12)
C2—C1—C14113.93 (11)C11—C12—H12A119.9
C3—C2—C7121.31 (12)C13—C12—H12A119.9
C3—C2—C1119.04 (12)C12—C13—C8120.08 (12)
C7—C2—C1119.64 (12)C12—C13—C14119.90 (11)
C4—C3—C2119.52 (13)C8—C13—C14120.01 (11)
C4—C3—H3A120.2O2—C14—C13113.16 (10)
C2—C3—H3A120.2O2—C14—C1113.02 (10)
C5—C4—C3119.81 (13)C13—C14—C1109.04 (10)
C5—C4—H4A120.1O2—C14—C15104.96 (10)
C3—C4—H4A120.1C13—C14—C15109.78 (10)
C4—C5—C6120.89 (13)C1—C14—C15106.59 (10)
C4—C5—H5A119.6C16—C15—C14112.70 (10)
C6—C5—H5A119.6C16—C15—H15A109.1
C5—C6—C7120.29 (13)C14—C15—H15A109.1
C5—C6—H6A119.9C16—C15—H15B109.1
C7—C6—H6A119.9C14—C15—H15B109.1
C2—C7—C6118.17 (12)H15A—C15—H15B107.8
C2—C7—C8119.20 (11)N1—C16—C15124.01 (11)
C6—C7—C8122.56 (12)N1—C16—S1113.74 (10)
C9—C8—C13118.81 (12)C15—C16—S1122.24 (9)
C9—C8—C7121.79 (12)C18—C17—N1115.57 (12)
C13—C8—C7119.30 (11)C18—C17—H17A122.2
C10—C9—C8120.78 (13)N1—C17—H17A122.2
C10—C9—H9A119.6C17—C18—S1109.36 (11)
C8—C9—H9A119.6C17—C18—H18A125.3
C11—C10—C9120.11 (12)S1—C18—H18A125.3
C11—C10—H10A119.9
O1—C1—C2—C3−26.56 (19)C7—C8—C13—C12−175.24 (11)
C14—C1—C2—C3149.37 (11)C9—C8—C13—C14−177.89 (11)
O1—C1—C2—C7154.95 (13)C7—C8—C13—C145.58 (17)
C14—C1—C2—C7−29.12 (16)C12—C13—C14—O216.31 (16)
C7—C2—C3—C41.73 (19)C8—C13—C14—O2−164.51 (11)
C1—C2—C3—C4−176.73 (12)C12—C13—C14—C1143.01 (11)
C2—C3—C4—C5−1.7 (2)C8—C13—C14—C1−37.82 (15)
C3—C4—C5—C60.7 (2)C12—C13—C14—C15−100.57 (13)
C4—C5—C6—C70.3 (2)C8—C13—C14—C1578.60 (14)
C3—C2—C7—C6−0.76 (19)O1—C1—C14—O2−8.85 (17)
C1—C2—C7—C6177.69 (11)C2—C1—C14—O2175.19 (10)
C3—C2—C7—C8176.32 (11)O1—C1—C14—C13−135.62 (13)
C1—C2—C7—C8−5.23 (18)C2—C1—C14—C1348.41 (13)
C5—C6—C7—C2−0.27 (19)O1—C1—C14—C15105.94 (13)
C5—C6—C7—C8−177.25 (12)C2—C1—C14—C15−70.03 (13)
C2—C7—C8—C9−158.44 (12)O2—C14—C15—C1664.01 (13)
C6—C7—C8—C918.51 (19)C13—C14—C15—C16−174.07 (10)
C2—C7—C8—C1317.98 (18)C1—C14—C15—C16−56.11 (13)
C6—C7—C8—C13−165.07 (12)C17—N1—C16—C15177.95 (12)
C13—C8—C9—C10−1.71 (19)C17—N1—C16—S1−0.74 (14)
C7—C8—C9—C10174.73 (12)C14—C15—C16—N1120.47 (13)
C8—C9—C10—C110.73 (19)C14—C15—C16—S1−60.94 (14)
C9—C10—C11—C120.69 (19)C18—S1—C16—N10.76 (11)
C10—C11—C12—C13−1.11 (19)C18—S1—C16—C15−177.96 (11)
C11—C12—C13—C80.11 (19)C16—N1—C17—C180.32 (17)
C11—C12—C13—C14179.28 (11)N1—C17—C18—S10.25 (16)
C9—C8—C13—C121.28 (18)C16—S1—C18—C17−0.54 (11)
Cg1 and Cg2 are the centroids of C8–C13 and C2–C7 rings, respectively.
D—H···AD—HH···AD···AD—H···A
O2—H1O2···N1i0.80 (2)1.976 (19)2.7542 (14)165 (2)
C5—H5A···Cg1ii0.932.833.6508 (16)147
C12—H12A···Cg2iii0.932.853.7214 (15)156
C18—H18A···Cg1iv0.932.723.3301 (16)124
Table 1

Hydrogen-bond geometry (Å, °)

Cg1 and Cg2 are the centroids of C8–C13 and C2–C7 rings, respectively.

D—H⋯AD—HH⋯ADAD—H⋯A
O2—H1O2⋯N1i0.80 (2)1.976 (19)2.7542 (14)165 (2)
C5—H5ACg1ii0.932.833.6508 (16)147
C12—H12ACg2iii0.932.853.7214 (15)156
C18—H18ACg1iv0.932.723.3301 (16)124

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

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