| Literature DB >> 21587898 |
Yan Yang1.
Abstract
The title compound, C(36)H(34)N(4)O(4)S(2), is a thio-glycoluril derivative, which bears two phenyl substituents on its convex face and two meth-oxy substituted o-xylylenes as sidewalls of the molecular clip. There is one half-mol-ecule in the asymmetric unit: a crystallographic twofold axis generates the complete molecule. The non-planar seven-membered rings adopt chair conformations, while the two five-membered rings exhibit envelope conformations and make a dihedral angle of 68.46 (12)°. The O atoms of the meth-oxy groups are coplanar with the six-membered o-xylylene sidewalls.Entities:
Year: 2010 PMID: 21587898 PMCID: PMC3006729 DOI: 10.1107/S160053681002204X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C36H34N4O4S2 | |
| Monoclinic, | Mo |
| Hall symbol: -C 2yc | Cell parameters from 2697 reflections |
| θ = 2.5–21.3° | |
| µ = 0.21 mm−1 | |
| β = 115.961 (3)° | Block, colorless |
| 0.23 × 0.20 × 0.10 mm | |
| Bruker SMART CCD area-detector diffractometer | 2279 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 27.0°, θmin = 2.1° |
| phi and ω scans | |
| 13570 measured reflections | |
| 3546 independent reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3546 reflections | (Δ/σ)max = 0.001 |
| 210 parameters | Δρmax = 0.29 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of |
| S1 | 0.11451 (4) | 0.22118 (5) | 0.14339 (5) | 0.0528 (3) | |
| N1 | 0.09215 (11) | 0.31734 (13) | 0.27979 (13) | 0.0335 (5) | |
| N2 | −0.00738 (11) | 0.34780 (13) | 0.14082 (13) | 0.0325 (4) | |
| C13 | 0.07957 (13) | 0.50126 (16) | 0.32973 (15) | 0.0343 (5) | |
| C9 | 0.16813 (14) | 0.27755 (17) | 0.35521 (17) | 0.0388 (6) | |
| H9A | 0.1970 | 0.3371 | 0.3949 | 0.047* | |
| H9B | 0.2036 | 0.2489 | 0.3294 | 0.047* | |
| C12 | 0.03855 (13) | 0.39284 (16) | 0.29759 (15) | 0.0306 (5) | |
| C10 | 0.06573 (14) | 0.29489 (16) | 0.18917 (16) | 0.0326 (5) | |
| O2 | 0.06197 (14) | 0.16264 (16) | 0.57355 (15) | 0.0713 (6) | |
| O1 | 0.24132 (13) | 0.08009 (14) | 0.37734 (15) | 0.0683 (6) | |
| C1 | 0.15415 (14) | 0.19204 (17) | 0.41322 (17) | 0.0393 (6) | |
| C2 | 0.10798 (15) | 0.21274 (17) | 0.46227 (17) | 0.0406 (6) | |
| C6 | 0.19350 (16) | 0.09225 (18) | 0.42349 (19) | 0.0477 (7) | |
| C18 | 0.13789 (15) | 0.53676 (19) | 0.30210 (19) | 0.0497 (7) | |
| H18 | 0.1560 | 0.4916 | 0.2688 | 0.060* | |
| C11 | −0.06462 (15) | 0.31850 (18) | 0.04628 (16) | 0.0392 (6) | |
| H11A | −0.0343 | 0.3157 | 0.0092 | 0.047* | |
| H11B | −0.1060 | 0.3742 | 0.0209 | 0.047* | |
| C3 | 0.10368 (17) | 0.1344 (2) | 0.52320 (19) | 0.0512 (7) | |
| C14 | 0.05429 (16) | 0.56979 (18) | 0.37978 (18) | 0.0463 (7) | |
| H14 | 0.0150 | 0.5469 | 0.3988 | 0.056* | |
| C4 | 0.14195 (17) | 0.0364 (2) | 0.5309 (2) | 0.0578 (8) | |
| H4 | 0.1379 | −0.0156 | 0.5701 | 0.069* | |
| C17 | 0.16966 (18) | 0.6394 (2) | 0.3237 (2) | 0.0655 (9) | |
| H17 | 0.2086 | 0.6631 | 0.3045 | 0.079* | |
| C5 | 0.18588 (18) | 0.0156 (2) | 0.4811 (2) | 0.0564 (8) | |
| H5 | 0.2108 | −0.0508 | 0.4863 | 0.068* | |
| C15 | 0.0865 (2) | 0.6717 (2) | 0.4019 (2) | 0.0638 (9) | |
| H15 | 0.0693 | 0.7170 | 0.4360 | 0.077* | |
| C16 | 0.1438 (2) | 0.7055 (2) | 0.3733 (2) | 0.0731 (10) | |
| H16 | 0.1654 | 0.7742 | 0.3878 | 0.088* | |
| C7 | 0.2729 (2) | −0.0224 (2) | 0.3750 (3) | 0.0859 (11) | |
| H7A | 0.2924 | −0.0550 | 0.4348 | 0.129* | |
| H7B | 0.3178 | −0.0162 | 0.3583 | 0.129* | |
| H7C | 0.2301 | −0.0658 | 0.3302 | 0.129* | |
| C8 | 0.0599 (2) | 0.0907 (3) | 0.6401 (2) | 0.0865 (11) | |
| H8A | 0.0241 | 0.0319 | 0.6094 | 0.130* | |
| H8B | 0.0396 | 0.1269 | 0.6787 | 0.130* | |
| H8C | 0.1146 | 0.0643 | 0.6775 | 0.130* |
| S1 | 0.0520 (5) | 0.0520 (4) | 0.0612 (5) | 0.0130 (3) | 0.0311 (4) | −0.0081 (3) |
| N1 | 0.0300 (11) | 0.0293 (9) | 0.0435 (12) | 0.0043 (7) | 0.0181 (9) | 0.0014 (8) |
| N2 | 0.0341 (11) | 0.0273 (9) | 0.0390 (11) | 0.0020 (8) | 0.0189 (9) | −0.0016 (8) |
| C13 | 0.0316 (13) | 0.0300 (11) | 0.0397 (13) | −0.0029 (9) | 0.0141 (10) | 0.0006 (9) |
| C9 | 0.0268 (13) | 0.0385 (13) | 0.0466 (14) | 0.0035 (10) | 0.0118 (11) | 0.0042 (10) |
| C12 | 0.0317 (12) | 0.0264 (10) | 0.0391 (12) | 0.0013 (9) | 0.0205 (10) | 0.0006 (9) |
| C10 | 0.0327 (13) | 0.0270 (11) | 0.0395 (14) | −0.0012 (9) | 0.0170 (11) | 0.0011 (9) |
| O2 | 0.0922 (16) | 0.0662 (13) | 0.0746 (14) | 0.0174 (11) | 0.0543 (13) | 0.0311 (11) |
| O1 | 0.0756 (15) | 0.0481 (11) | 0.0968 (17) | 0.0248 (10) | 0.0521 (13) | 0.0162 (10) |
| C1 | 0.0328 (14) | 0.0343 (12) | 0.0433 (14) | 0.0000 (10) | 0.0097 (11) | 0.0030 (10) |
| C2 | 0.0390 (14) | 0.0331 (12) | 0.0430 (14) | −0.0015 (10) | 0.0118 (12) | 0.0037 (10) |
| C6 | 0.0452 (16) | 0.0364 (13) | 0.0582 (17) | 0.0053 (11) | 0.0197 (13) | 0.0014 (11) |
| C18 | 0.0428 (16) | 0.0428 (14) | 0.0692 (19) | −0.0048 (11) | 0.0300 (14) | 0.0017 (12) |
| C11 | 0.0397 (14) | 0.0408 (13) | 0.0357 (13) | 0.0020 (10) | 0.0153 (11) | −0.0017 (10) |
| C3 | 0.0549 (18) | 0.0474 (15) | 0.0536 (17) | −0.0009 (13) | 0.0259 (14) | 0.0083 (12) |
| C14 | 0.0582 (17) | 0.0334 (13) | 0.0518 (16) | −0.0035 (11) | 0.0284 (14) | −0.0037 (11) |
| C4 | 0.063 (2) | 0.0437 (15) | 0.0596 (18) | 0.0013 (13) | 0.0207 (16) | 0.0190 (13) |
| C17 | 0.0486 (18) | 0.0531 (17) | 0.091 (2) | −0.0183 (14) | 0.0267 (17) | 0.0117 (16) |
| C5 | 0.065 (2) | 0.0345 (14) | 0.0639 (19) | 0.0073 (12) | 0.0226 (16) | 0.0073 (13) |
| C15 | 0.090 (2) | 0.0359 (14) | 0.0624 (19) | −0.0065 (15) | 0.0304 (17) | −0.0115 (13) |
| C16 | 0.084 (3) | 0.0387 (16) | 0.080 (2) | −0.0232 (16) | 0.021 (2) | −0.0042 (15) |
| C7 | 0.112 (3) | 0.055 (2) | 0.113 (3) | 0.0199 (19) | 0.070 (3) | −0.0035 (18) |
| C8 | 0.099 (3) | 0.095 (3) | 0.076 (2) | 0.009 (2) | 0.048 (2) | 0.036 (2) |
| S1—C10 | 1.652 (2) | C6—C5 | 1.381 (4) |
| N1—C10 | 1.351 (3) | C18—C17 | 1.386 (4) |
| N1—C9 | 1.462 (3) | C18—H18 | 0.9300 |
| N1—C12 | 1.465 (3) | C11—C2i | 1.511 (3) |
| N2—C10 | 1.371 (3) | C11—H11A | 0.9700 |
| N2—C12i | 1.450 (3) | C11—H11B | 0.9700 |
| N2—C11 | 1.462 (3) | C3—C4 | 1.384 (4) |
| C13—C18 | 1.381 (3) | C14—C15 | 1.381 (3) |
| C13—C14 | 1.382 (3) | C14—H14 | 0.9300 |
| C13—C12 | 1.522 (3) | C4—C5 | 1.375 (4) |
| C9—C1 | 1.511 (3) | C4—H4 | 0.9300 |
| C9—H9A | 0.9700 | C17—C16 | 1.364 (4) |
| C9—H9B | 0.9700 | C17—H17 | 0.9300 |
| C12—N2i | 1.450 (3) | C5—H5 | 0.9300 |
| C12—C12i | 1.553 (4) | C15—C16 | 1.369 (4) |
| O2—C3 | 1.370 (3) | C15—H15 | 0.9300 |
| O2—C8 | 1.412 (3) | C16—H16 | 0.9300 |
| O1—C6 | 1.369 (3) | C7—H7A | 0.9600 |
| O1—C7 | 1.410 (3) | C7—H7B | 0.9600 |
| C1—C2 | 1.398 (3) | C7—H7C | 0.9600 |
| C1—C6 | 1.409 (3) | C8—H8A | 0.9600 |
| C2—C3 | 1.412 (3) | C8—H8B | 0.9600 |
| C2—C11i | 1.511 (3) | C8—H8C | 0.9600 |
| C10—N1—C9 | 125.79 (19) | N2—C11—H11A | 108.6 |
| C10—N1—C12 | 113.23 (17) | C2i—C11—H11A | 108.6 |
| C9—N1—C12 | 120.91 (18) | N2—C11—H11B | 108.6 |
| C10—N2—C12i | 111.24 (18) | C2i—C11—H11B | 108.6 |
| C10—N2—C11 | 122.26 (18) | H11A—C11—H11B | 107.6 |
| C12i—N2—C11 | 120.09 (18) | O2—C3—C4 | 123.7 (2) |
| C18—C13—C14 | 118.6 (2) | O2—C3—C2 | 116.3 (2) |
| C18—C13—C12 | 120.1 (2) | C4—C3—C2 | 120.0 (3) |
| C14—C13—C12 | 121.1 (2) | C15—C14—C13 | 121.0 (3) |
| N1—C9—C1 | 113.92 (19) | C15—C14—H14 | 119.5 |
| N1—C9—H9A | 108.8 | C13—C14—H14 | 119.5 |
| C1—C9—H9A | 108.8 | C5—C4—C3 | 120.4 (2) |
| N1—C9—H9B | 108.8 | C5—C4—H4 | 119.8 |
| C1—C9—H9B | 108.8 | C3—C4—H4 | 119.8 |
| H9A—C9—H9B | 107.7 | C16—C17—C18 | 120.0 (3) |
| N2i—C12—N1 | 111.61 (16) | C16—C17—H17 | 120.0 |
| N2i—C12—C13 | 112.90 (18) | C18—C17—H17 | 120.0 |
| N1—C12—C13 | 112.20 (18) | C4—C5—C6 | 120.8 (2) |
| N2i—C12—C12i | 103.2 (2) | C4—C5—H5 | 119.6 |
| N1—C12—C12i | 100.82 (17) | C6—C5—H5 | 119.6 |
| C13—C12—C12i | 115.23 (12) | C16—C15—C14 | 119.4 (3) |
| N1—C10—N2 | 108.02 (18) | C16—C15—H15 | 120.3 |
| N1—C10—S1 | 126.35 (17) | C14—C15—H15 | 120.3 |
| N2—C10—S1 | 125.57 (17) | C17—C16—C15 | 120.7 (3) |
| C3—O2—C8 | 119.2 (2) | C17—C16—H16 | 119.7 |
| C6—O1—C7 | 118.2 (2) | C15—C16—H16 | 119.7 |
| C2—C1—C6 | 119.4 (2) | O1—C7—H7A | 109.5 |
| C2—C1—C9 | 121.2 (2) | O1—C7—H7B | 109.5 |
| C6—C1—C9 | 119.2 (2) | H7A—C7—H7B | 109.5 |
| C1—C2—C3 | 119.4 (2) | O1—C7—H7C | 109.5 |
| C1—C2—C11i | 121.4 (2) | H7A—C7—H7C | 109.5 |
| C3—C2—C11i | 119.2 (2) | H7B—C7—H7C | 109.5 |
| O1—C6—C5 | 123.9 (2) | O2—C8—H8A | 109.5 |
| O1—C6—C1 | 116.0 (2) | O2—C8—H8B | 109.5 |
| C5—C6—C1 | 120.0 (3) | H8A—C8—H8B | 109.5 |
| C13—C18—C17 | 120.3 (3) | O2—C8—H8C | 109.5 |
| C13—C18—H18 | 119.8 | H8A—C8—H8C | 109.5 |
| C17—C18—H18 | 119.8 | H8B—C8—H8C | 109.5 |
| N2—C11—C2i | 114.50 (19) | ||
| C10—N1—C9—C1 | −106.3 (3) | C7—O1—C6—C5 | 11.7 (4) |
| C12—N1—C9—C1 | 77.1 (3) | C7—O1—C6—C1 | −171.6 (3) |
| C10—N1—C12—N2i | 122.1 (2) | C2—C1—C6—O1 | −176.5 (2) |
| C9—N1—C12—N2i | −60.9 (2) | C9—C1—C6—O1 | −1.2 (3) |
| C10—N1—C12—C13 | −110.1 (2) | C2—C1—C6—C5 | 0.4 (4) |
| C9—N1—C12—C13 | 66.9 (2) | C9—C1—C6—C5 | 175.7 (2) |
| C10—N1—C12—C12i | 13.1 (2) | C14—C13—C18—C17 | −0.5 (4) |
| C9—N1—C12—C12i | −169.92 (18) | C12—C13—C18—C17 | 173.8 (2) |
| C18—C13—C12—N2i | 155.7 (2) | C10—N2—C11—C2i | 70.0 (3) |
| C14—C13—C12—N2i | −30.1 (3) | C12i—N2—C11—C2i | −79.4 (2) |
| C18—C13—C12—N1 | 28.6 (3) | C8—O2—C3—C4 | 2.6 (4) |
| C14—C13—C12—N1 | −157.3 (2) | C8—O2—C3—C2 | −175.9 (3) |
| C18—C13—C12—C12i | −86.0 (3) | C1—C2—C3—O2 | 175.8 (2) |
| C14—C13—C12—C12i | 88.1 (3) | C11i—C2—C3—O2 | −2.3 (4) |
| C9—N1—C10—N2 | −179.57 (19) | C1—C2—C3—C4 | −2.8 (4) |
| C12—N1—C10—N2 | −2.7 (2) | C11i—C2—C3—C4 | 179.0 (2) |
| C9—N1—C10—S1 | −2.1 (3) | C18—C13—C14—C15 | 0.0 (4) |
| C12—N1—C10—S1 | 174.75 (16) | C12—C13—C14—C15 | −174.3 (2) |
| C12i—N2—C10—N1 | −10.2 (2) | O2—C3—C4—C5 | −177.0 (3) |
| C11—N2—C10—N1 | −162.05 (19) | C2—C3—C4—C5 | 1.5 (4) |
| C12i—N2—C10—S1 | 172.29 (15) | C13—C18—C17—C16 | 0.6 (4) |
| C11—N2—C10—S1 | 20.5 (3) | C3—C4—C5—C6 | 0.8 (4) |
| N1—C9—C1—C2 | −61.3 (3) | O1—C6—C5—C4 | 174.9 (2) |
| N1—C9—C1—C6 | 123.5 (2) | C1—C6—C5—C4 | −1.8 (4) |
| C6—C1—C2—C3 | 1.8 (4) | C13—C14—C15—C16 | 0.5 (4) |
| C9—C1—C2—C3 | −173.4 (2) | C18—C17—C16—C15 | −0.2 (5) |
| C6—C1—C2—C11i | 180.0 (2) | C14—C15—C16—C17 | −0.4 (5) |
| C9—C1—C2—C11i | 4.8 (3) |
| Cg1 is the centroid of the C1–C6 ring. |
| H··· | ||||
| C9—H9A···Cg1ii | 0.97 | 2.70 | 3.540 | 145 |
| C11—H11A···O2ii | 0.97 | 2.26 | 2.757 (3) | 111 |
| C14—H14···N2ii | 0.93 | 2.56 | 2.879 (3) | 101 |
| C18—H18···N1 | 0.93 | 2.51 | 2.842 (3) | 102 |
| C9—H9B···S1 | 0.97 | 2.73 | 3.189 (3) | 110 |
| C9—H9B···O1 | 0.97 | 2.25 | 2.748 (3) | 111 |