Literature DB >> 21582966

2,6-Bis(2-chloro-ethyl)-8b,8c-diphenyl-perhydro-2,3a,4a,6,7a,8a-hexa-azacyclo-penta-[def]fluorene-4,8-dithione.

Yandong Wu1, Yichong Sun.   

Abstract

In the title mol-ecule, C(24)H(26)Cl(2)N(6)S(2), the two phenyl rings form a dihedral angle of 51.95 (7)° and the distance between their centroids is 4.156 (8) Å. The crystal packing exhibits weak inter-molecular C-H⋯S and C-H⋯N hydrogen bonds.

Entities:  

Year:  2009        PMID: 21582966      PMCID: PMC2969207          DOI: 10.1107/S1600536809024118

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For applications of glycoluril derivatives, see: Wu et al. (2002 ▶). For a related structure, see: Wang & Xi (2009 ▶). For details of the synthesis, see: Ramos & Rosen (1981 ▶).

Experimental

Crystal data

C24H26Cl2N6S2 M = 533.53 Monoclinic, a = 8.7566 (2) Å b = 14.0877 (3) Å c = 20.8575 (5) Å β = 99.525 (1)° V = 2537.52 (10) Å3 Z = 4 Mo Kα radiation μ = 0.45 mm−1 T = 298 K 0.23 × 0.20 × 0.10 mm

Data collection

Bruker SMART 4K CCD area-detector diffractometer Absorption correction: none 16129 measured reflections 4979 independent reflections 3375 reflections with I > 2σ(I) R int = 0.078

Refinement

R[F 2 > 2σ(F 2)] = 0.064 wR(F 2) = 0.164 S = 1.02 4979 reflections 307 parameters H-atom parameters constrained Δρmax = 0.63 e Å−3 Δρmin = −0.51 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1999 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809024118/cv2576sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809024118/cv2576Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C24H26Cl2N6S2F(000) = 1112
Mr = 533.53Dx = 1.397 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2851 reflections
a = 8.7566 (2) Åθ = 2.5–21.7°
b = 14.0877 (3) ŵ = 0.45 mm1
c = 20.8575 (5) ÅT = 298 K
β = 99.525 (1)°Block, colourless
V = 2537.52 (10) Å30.23 × 0.20 × 0.10 mm
Z = 4
Bruker SMART 4K CCD area-detector diffractometer3375 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.078
graphiteθmax = 26.0°, θmin = 1.8°
φ and ω scansh = −10→10
16129 measured reflectionsk = −17→17
4979 independent reflectionsl = −18→25
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.064Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.164H-atom parameters constrained
S = 1.02w = 1/[σ2(Fo2) + (0.0798P)2] where P = (Fo2 + 2Fc2)/3
4979 reflections(Δ/σ)max < 0.001
307 parametersΔρmax = 0.63 e Å3
0 restraintsΔρmin = −0.51 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.5265 (5)0.0996 (4)0.4154 (2)0.0757 (13)
H1A0.44970.08980.44340.091*
H1B0.54580.16730.41360.091*
C20.4639 (4)0.0657 (3)0.34973 (18)0.0501 (9)
H2A0.4466−0.00220.35160.060*
H2B0.36420.09560.33560.060*
C30.5429 (3)0.0178 (2)0.24750 (17)0.0394 (8)
H3A0.5366−0.04610.26410.047*
H3B0.63240.02100.22570.047*
C40.5586 (4)0.1811 (2)0.27789 (16)0.0393 (8)
H4A0.64830.19250.25720.047*
H4B0.56430.22420.31450.047*
C50.2613 (3)−0.0038 (2)0.19965 (15)0.0319 (7)
C60.2848 (3)0.2397 (2)0.24636 (15)0.0314 (7)
C70.3878 (3)0.13561 (19)0.17632 (14)0.0281 (7)
C80.4933 (3)0.1550 (2)0.12701 (15)0.0342 (7)
C90.5363 (4)0.0818 (3)0.08934 (17)0.0493 (9)
H90.50210.02030.09470.059*
C100.6305 (5)0.1006 (4)0.0436 (2)0.0679 (13)
H100.65920.05160.01820.081*
C110.6819 (5)0.1918 (4)0.0354 (2)0.0725 (14)
H110.74450.20410.00440.087*
C120.6409 (4)0.2640 (3)0.0727 (2)0.0670 (12)
H120.67630.32530.06760.080*
C130.5465 (4)0.2455 (3)0.11833 (18)0.0494 (9)
H130.51840.29490.14360.059*
C140.2095 (3)0.14683 (19)0.15257 (14)0.0278 (7)
C150.1585 (3)0.1754 (2)0.08262 (15)0.0336 (7)
C160.1323 (4)0.1075 (3)0.03430 (17)0.0496 (9)
H160.14400.04360.04500.060*
C170.0888 (5)0.1341 (3)−0.02984 (19)0.0687 (12)
H170.07190.0879−0.06210.082*
C180.0703 (5)0.2282 (4)−0.0463 (2)0.0752 (14)
H180.03920.2458−0.08940.090*
C190.0978 (5)0.2958 (3)0.0012 (2)0.0714 (13)
H190.08700.3597−0.00980.086*
C200.1416 (4)0.2694 (3)0.06534 (18)0.0522 (10)
H200.15990.31590.09730.063*
C21−0.0141 (3)0.0516 (2)0.17475 (16)0.0345 (7)
H21A−0.07840.06570.13340.041*
H21B−0.0404−0.01170.18760.041*
C220.0005 (3)0.2145 (2)0.20563 (17)0.0384 (8)
H22A−0.06280.23410.16520.046*
H22B−0.01630.25930.23910.046*
C230.0225 (4)0.0944 (2)0.28981 (15)0.0383 (8)
H23A0.01570.14850.31800.046*
H23B0.13130.08060.29060.046*
C24−0.0531 (4)0.0101 (2)0.31604 (17)0.0429 (8)
H24A−0.0589−0.04250.28570.052*
H24B−0.15730.02620.32230.052*
Cl10.69817 (17)0.04249 (16)0.44949 (7)0.1337 (8)
Cl20.06244 (11)−0.02216 (7)0.39222 (5)0.0585 (3)
N10.5631 (3)0.08436 (18)0.30145 (13)0.0382 (7)
N20.4172 (3)0.20160 (16)0.23108 (12)0.0304 (6)
N30.4014 (3)0.03855 (16)0.20014 (13)0.0301 (6)
N40.1644 (3)0.21709 (16)0.19809 (12)0.0303 (6)
N50.1496 (3)0.05305 (16)0.16642 (12)0.0289 (6)
N6−0.0485 (3)0.11945 (18)0.22321 (13)0.0356 (6)
S10.23332 (10)−0.10921 (6)0.23090 (5)0.0516 (3)
S20.27222 (11)0.30702 (6)0.31074 (4)0.0461 (3)
U11U22U33U12U13U23
C10.065 (3)0.104 (4)0.059 (3)0.015 (3)0.015 (2)0.001 (3)
C20.041 (2)0.064 (2)0.045 (2)−0.0041 (17)0.0059 (17)0.0122 (19)
C30.0314 (17)0.0371 (18)0.049 (2)0.0063 (14)0.0052 (16)0.0086 (16)
C40.0339 (18)0.0444 (19)0.040 (2)−0.0068 (14)0.0066 (15)−0.0017 (16)
C50.0287 (16)0.0280 (16)0.040 (2)0.0012 (12)0.0087 (14)−0.0048 (14)
C60.0374 (17)0.0230 (15)0.0350 (19)0.0003 (12)0.0097 (15)0.0045 (13)
C70.0300 (16)0.0241 (15)0.0307 (17)0.0008 (12)0.0068 (13)−0.0010 (13)
C80.0279 (16)0.0418 (19)0.0333 (18)−0.0004 (13)0.0061 (14)0.0005 (15)
C90.042 (2)0.061 (2)0.047 (2)0.0026 (17)0.0154 (18)−0.0076 (19)
C100.050 (2)0.112 (4)0.046 (3)0.015 (2)0.023 (2)−0.014 (2)
C110.047 (2)0.124 (4)0.051 (3)−0.011 (3)0.021 (2)0.016 (3)
C120.057 (3)0.088 (3)0.058 (3)−0.022 (2)0.015 (2)0.019 (3)
C130.057 (2)0.051 (2)0.043 (2)−0.0113 (17)0.0161 (18)0.0069 (17)
C140.0305 (16)0.0233 (15)0.0313 (17)0.0030 (12)0.0105 (13)−0.0017 (13)
C150.0329 (17)0.0358 (17)0.0340 (19)0.0058 (13)0.0113 (14)−0.0005 (14)
C160.070 (3)0.044 (2)0.036 (2)0.0072 (18)0.0130 (19)−0.0031 (17)
C170.102 (4)0.073 (3)0.031 (2)0.007 (3)0.011 (2)−0.009 (2)
C180.093 (4)0.102 (4)0.032 (2)0.020 (3)0.016 (2)0.022 (3)
C190.103 (4)0.063 (3)0.051 (3)0.023 (2)0.019 (3)0.024 (2)
C200.073 (3)0.042 (2)0.043 (2)0.0065 (18)0.012 (2)0.0064 (18)
C210.0276 (16)0.0409 (18)0.0349 (19)−0.0010 (13)0.0048 (14)0.0002 (15)
C220.0340 (17)0.0412 (19)0.041 (2)0.0118 (14)0.0105 (15)−0.0007 (16)
C230.0374 (18)0.0450 (19)0.034 (2)−0.0018 (15)0.0086 (15)−0.0027 (15)
C240.0354 (18)0.053 (2)0.041 (2)−0.0052 (15)0.0065 (16)0.0053 (17)
Cl10.0874 (10)0.253 (2)0.0537 (8)0.0758 (12)−0.0083 (7)0.0002 (10)
Cl20.0556 (6)0.0663 (6)0.0516 (6)−0.0015 (5)0.0029 (5)0.0170 (5)
N10.0297 (14)0.0429 (16)0.0413 (17)0.0002 (12)0.0033 (12)0.0062 (13)
N20.0316 (14)0.0296 (13)0.0307 (15)−0.0033 (11)0.0076 (11)−0.0015 (11)
N30.0241 (13)0.0236 (13)0.0426 (16)0.0012 (10)0.0058 (11)0.0019 (11)
N40.0342 (14)0.0255 (13)0.0319 (15)0.0052 (10)0.0077 (12)−0.0022 (11)
N50.0270 (13)0.0264 (13)0.0340 (15)−0.0008 (10)0.0074 (11)0.0005 (11)
N60.0320 (14)0.0409 (16)0.0356 (16)0.0058 (11)0.0105 (12)0.0000 (12)
S10.0454 (5)0.0260 (5)0.0856 (8)−0.0009 (4)0.0169 (5)0.0123 (5)
S20.0600 (6)0.0389 (5)0.0420 (6)−0.0011 (4)0.0163 (5)−0.0135 (4)
C1—C21.469 (6)C12—C131.384 (5)
C1—Cl11.749 (4)C12—H120.9300
C1—H1A0.9700C13—H130.9300
C1—H1B0.9700C14—N51.468 (3)
C2—N11.459 (4)C14—N41.470 (3)
C2—H2A0.9700C14—C151.508 (4)
C2—H2B0.9700C15—C201.374 (4)
C3—N11.453 (4)C15—C161.381 (4)
C3—N31.480 (4)C16—C171.381 (5)
C3—H3A0.9700C16—H160.9300
C3—H3B0.9700C17—C181.372 (6)
C4—N11.447 (4)C17—H170.9300
C4—N21.473 (4)C18—C191.366 (6)
C4—H4A0.9700C18—H180.9300
C4—H4B0.9700C19—C201.381 (5)
C5—N51.362 (4)C19—H190.9300
C5—N31.363 (4)C20—H200.9300
C5—S11.656 (3)C21—N61.458 (4)
C6—N21.362 (4)C21—N51.472 (4)
C6—N41.369 (4)C21—H21A0.9700
C6—S21.662 (3)C21—H21B0.9700
C7—N31.453 (3)C22—N41.470 (4)
C7—N21.462 (4)C22—N61.471 (4)
C7—C81.517 (4)C22—H22A0.9700
C7—C141.565 (4)C22—H22B0.9700
C8—C131.379 (4)C23—N61.468 (4)
C8—C91.385 (4)C23—C241.506 (4)
C9—C101.386 (5)C23—H23A0.9700
C9—H90.9300C23—H23B0.9700
C10—C111.381 (6)C24—Cl21.795 (3)
C10—H100.9300C24—H24A0.9700
C11—C121.364 (6)C24—H24B0.9700
C11—H110.9300
C2—C1—Cl1113.1 (3)C20—C15—C16118.6 (3)
C2—C1—H1A109.0C20—C15—C14120.8 (3)
Cl1—C1—H1A109.0C16—C15—C14120.5 (3)
C2—C1—H1B109.0C17—C16—C15120.4 (3)
Cl1—C1—H1B109.0C17—C16—H16119.8
H1A—C1—H1B107.8C15—C16—H16119.8
N1—C2—C1114.3 (3)C18—C17—C16120.4 (4)
N1—C2—H2A108.7C18—C17—H17119.8
C1—C2—H2A108.7C16—C17—H17119.8
N1—C2—H2B108.7C19—C18—C17119.6 (4)
C1—C2—H2B108.7C19—C18—H18120.2
H2A—C2—H2B107.6C17—C18—H18120.2
N1—C3—N3111.8 (2)C18—C19—C20120.1 (4)
N1—C3—H3A109.3C18—C19—H19120.0
N3—C3—H3A109.3C20—C19—H19120.0
N1—C3—H3B109.3C15—C20—C19121.0 (4)
N3—C3—H3B109.3C15—C20—H20119.5
H3A—C3—H3B107.9C19—C20—H20119.5
N1—C4—N2112.5 (2)N6—C21—N5112.9 (2)
N1—C4—H4A109.1N6—C21—H21A109.0
N2—C4—H4A109.1N5—C21—H21A109.0
N1—C4—H4B109.1N6—C21—H21B109.0
N2—C4—H4B109.1N5—C21—H21B109.0
H4A—C4—H4B107.8H21A—C21—H21B107.8
N5—C5—N3108.4 (2)N4—C22—N6112.3 (2)
N5—C5—S1126.0 (2)N4—C22—H22A109.1
N3—C5—S1125.5 (2)N6—C22—H22A109.1
N2—C6—N4108.5 (3)N4—C22—H22B109.1
N2—C6—S2125.9 (2)N6—C22—H22B109.1
N4—C6—S2125.5 (2)H22A—C22—H22B107.9
N3—C7—N2109.7 (2)N6—C23—C24113.0 (3)
N3—C7—C8112.1 (2)N6—C23—H23A109.0
N2—C7—C8111.5 (2)C24—C23—H23A109.0
N3—C7—C14103.0 (2)N6—C23—H23B109.0
N2—C7—C14102.7 (2)C24—C23—H23B109.0
C8—C7—C14117.1 (2)H23A—C23—H23B107.8
C13—C8—C9118.9 (3)C23—C24—Cl2107.7 (2)
C13—C8—C7120.8 (3)C23—C24—H24A110.2
C9—C8—C7120.3 (3)Cl2—C24—H24A110.2
C10—C9—C8119.8 (4)C23—C24—H24B110.2
C10—C9—H9120.1Cl2—C24—H24B110.2
C8—C9—H9120.1H24A—C24—H24B108.5
C11—C10—C9120.4 (4)C4—N1—C3110.6 (3)
C11—C10—H10119.8C4—N1—C2114.7 (3)
C9—C10—H10119.8C3—N1—C2114.1 (3)
C12—C11—C10120.0 (4)C6—N2—C7112.7 (2)
C12—C11—H11120.0C6—N2—C4125.2 (3)
C10—C11—H11120.0C7—N2—C4114.4 (2)
C11—C12—C13119.7 (4)C5—N3—C7112.7 (2)
C11—C12—H12120.1C5—N3—C3124.9 (3)
C13—C12—H12120.1C7—N3—C3115.2 (2)
C8—C13—C12121.2 (4)C6—N4—C14112.0 (2)
C8—C13—H13119.4C6—N4—C22125.0 (3)
C12—C13—H13119.4C14—N4—C22115.1 (2)
N5—C14—N4109.6 (2)C5—N5—C14112.3 (2)
N5—C14—C15111.8 (2)C5—N5—C21124.3 (2)
N4—C14—C15112.1 (2)C14—N5—C21115.0 (2)
N5—C14—C7102.5 (2)C21—N6—C23113.2 (2)
N4—C14—C7102.9 (2)C21—N6—C22108.8 (2)
C15—C14—C7117.0 (2)C23—N6—C22111.1 (3)
Cl1—C1—C2—N1−63.9 (4)C8—C7—N2—C6132.9 (3)
N3—C7—C8—C13−153.4 (3)C14—C7—N2—C66.7 (3)
N2—C7—C8—C13−29.9 (4)N3—C7—N2—C448.9 (3)
C14—C7—C8—C1388.0 (4)C8—C7—N2—C4−75.9 (3)
N3—C7—C8—C927.4 (4)C14—C7—N2—C4157.9 (2)
N2—C7—C8—C9150.9 (3)N1—C4—N2—C693.6 (3)
C14—C7—C8—C9−91.2 (3)N1—C4—N2—C7−53.5 (3)
C13—C8—C9—C10−0.4 (5)N5—C5—N3—C710.2 (3)
C7—C8—C9—C10178.8 (3)S1—C5—N3—C7−172.8 (2)
C8—C9—C10—C110.1 (6)N5—C5—N3—C3158.9 (3)
C9—C10—C11—C120.4 (7)S1—C5—N3—C3−24.0 (4)
C10—C11—C12—C13−0.6 (7)N2—C7—N3—C5103.0 (3)
C9—C8—C13—C120.2 (5)C8—C7—N3—C5−132.5 (3)
C7—C8—C13—C12−179.0 (3)C14—C7—N3—C5−5.8 (3)
C11—C12—C13—C80.3 (6)N2—C7—N3—C3−48.9 (3)
N3—C7—C14—N5−0.4 (3)C8—C7—N3—C375.5 (3)
N2—C7—C14—N5−114.4 (2)C14—C7—N3—C3−157.8 (2)
C8—C7—C14—N5123.1 (3)N1—C3—N3—C5−95.3 (3)
N3—C7—C14—N4113.5 (2)N1—C3—N3—C752.8 (3)
N2—C7—C14—N4−0.6 (3)N2—C6—N4—C1410.1 (3)
C8—C7—C14—N4−123.1 (3)S2—C6—N4—C14−172.8 (2)
N3—C7—C14—C15−123.1 (3)N2—C6—N4—C22157.3 (2)
N2—C7—C14—C15122.9 (3)S2—C6—N4—C22−25.5 (4)
C8—C7—C14—C150.3 (4)N5—C14—N4—C6102.9 (3)
N5—C14—C15—C20151.7 (3)C15—C14—N4—C6−132.2 (3)
N4—C14—C15—C2028.1 (4)C7—C14—N4—C6−5.6 (3)
C7—C14—C15—C20−90.5 (3)N5—C14—N4—C22−47.8 (3)
N5—C14—C15—C16−30.2 (4)C15—C14—N4—C2277.1 (3)
N4—C14—C15—C16−153.9 (3)C7—C14—N4—C22−156.4 (2)
C7—C14—C15—C1687.5 (4)N6—C22—N4—C6−92.4 (3)
C20—C15—C16—C17−0.5 (5)N6—C22—N4—C1454.0 (3)
C14—C15—C16—C17−178.6 (3)N3—C5—N5—C14−10.4 (3)
C15—C16—C17—C18−0.3 (6)S1—C5—N5—C14172.6 (2)
C16—C17—C18—C191.1 (7)N3—C5—N5—C21−156.7 (3)
C17—C18—C19—C20−1.0 (7)S1—C5—N5—C2126.3 (4)
C16—C15—C20—C190.7 (5)N4—C14—N5—C5−102.4 (3)
C14—C15—C20—C19178.7 (3)C15—C14—N5—C5132.6 (3)
C18—C19—C20—C150.1 (7)C7—C14—N5—C56.5 (3)
N6—C23—C24—Cl2171.8 (2)N4—C14—N5—C2147.2 (3)
N2—C4—N1—C354.4 (3)C15—C14—N5—C21−77.8 (3)
N2—C4—N1—C2−76.3 (3)C7—C14—N5—C21156.1 (2)
N3—C3—N1—C4−53.6 (3)N6—C21—N5—C592.0 (3)
N3—C3—N1—C277.5 (3)N6—C21—N5—C14−53.5 (3)
C1—C2—N1—C4−77.7 (4)N5—C21—N6—C23−68.8 (3)
C1—C2—N1—C3153.3 (3)N5—C21—N6—C2255.2 (3)
N4—C6—N2—C7−10.6 (3)C24—C23—N6—C21−71.7 (3)
S2—C6—N2—C7172.3 (2)C24—C23—N6—C22165.6 (2)
N4—C6—N2—C4−158.2 (3)N4—C22—N6—C21−55.4 (3)
S2—C6—N2—C424.7 (4)N4—C22—N6—C2369.9 (3)
N3—C7—N2—C6−102.3 (3)
D—H···AD—HH···AD···AD—H···A
C24—H24B···N1i0.972.553.485 (4)162
C22—H22B···S1ii0.972.803.607 (3)141
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C24—H24B⋯N1i0.972.553.485 (4)162
C22—H22B⋯S1ii0.972.803.607 (3)141

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-05-29

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Journal:  J Org Chem       Date:  2002-08-09       Impact factor: 4.354

  3 in total
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1.  3,6,14,17-Tetramethoxy-22,23-diphenyl-1,10,12,21-tetraazahexacyclo[19.2.1.0.0.0.0]tetracosa-2(7),3,5,13(18),14,16-hexaene-11,24-di-thione.

Authors:  Yan Yang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-16
  1 in total

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