Literature DB >> 21587890

Polythia-zide.

Thomas Gelbrich1, Mairi F Haddow, Ulrich J Griesser.   

Abstract

The crystal structure of the title compound, C(11)H(13)ClF(3)N(3)O(4)S(3) (systematic name: 6-chloro-2-methyl-3-{[(2,2,2-trifluoro-eth-yl)sulfan-yl]meth-yl}-3,4-dihydro-2H-1,2,4-benzothia-diazine-7-sul-f-on-amide 1,1-diox-ide; CRN: 346-18-9), exhibits a two-dimensional network of hydrogen-bonded mol-ecules parallel to (01). The NH and NH(2) groups act as donor sites and the sulfonyl O atoms as acceptor sites in N-H⋯O hydrogen bonds, and a C-H⋯O interaction also occurs. The thiadiazine ring adopts an envelope conformation with the N atom bonded to sulfur at the tip of the flap, and the methyl substituent is in an axial position.

Entities:  

Year:  2010        PMID: 21587890      PMCID: PMC3006947          DOI: 10.1107/S1600536810022105

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the preparation of polythia­zide, see: McManus (1961 ▶). For a comprehensive description of polythia­zide, see: Negendra Vara et al. (1991 ▶). For a preliminary crystallographic study at room temperature, see Dupont & Dideberg (1970 ▶). For crystal structures of polymorphs and solvates of related thia­zide compounds, see: Zhou et al. (2006 ▶); Johnston et al. (2007a ▶,b ▶); Johnston et al. (2007 ▶); Fernandes, Florence et al. (2006 ▶); Fernandes, Shankland et al. (2007 ▶); Johnston et al. (2008 ▶); Fabbiani et al. (2007 ▶); Fernandes, Johnston et al. (2007 ▶); Fernandes, Leech et al. (2007 ▶).

Experimental

Crystal data

C11H13ClF3N3O4S3 M = 439.87 Monoclinic, a = 14.6659 (7) Å b = 9.5498 (6) Å c = 13.6720 (7) Å β = 116.149 (3)° V = 1718.87 (16) Å3 Z = 4 Mo Kα radiation μ = 0.64 mm−1 T = 120 K 0.12 × 0.10 × 0.06 mm

Data collection

Bruker-Nonius Roper CCD camera on κ-goniostat diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 2007 ▶) T min = 0.927, T max = 0.963 9021 measured reflections 3197 independent reflections 2768 reflections with I > 2σ(I) R int = 0.055

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.098 S = 1.06 3197 reflections 239 parameters 5 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.32 e Å−3 Δρmin = −0.41 e Å−3 Absolute structure: Flack (1983 ▶), 1504 Friedel pairs Flack parameter: 0.12 (8) Data collection: COLLECT (Hooft, 1998 ▶); cell refinement: DENZO (Otwinowski & Minor, 1997 ▶) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810022105/kj2150sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022105/kj2150Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H13ClF3N3O4S3F(000) = 896
Mr = 439.87Dx = 1.700 Mg m3
Monoclinic, CcMo Kα radiation, λ = 0.71073 Å
Hall symbol: C -2ycCell parameters from 11202 reflections
a = 14.6659 (7) Åθ = 2.9–27.5°
b = 9.5498 (6) ŵ = 0.64 mm1
c = 13.6720 (7) ÅT = 120 K
β = 116.149 (3)°Plate, colourless
V = 1718.87 (16) Å30.12 × 0.10 × 0.06 mm
Z = 4
Bruker-Nonius Roper CCD camera on κ-goniostat diffractometer3197 independent reflections
Radiation source: Bruker–Nonius FR591 rotating anode2768 reflections with I > 2σ(I)
graphiteRint = 0.055
Detector resolution: 9.091 pixels mm-1θmax = 26.0°, θmin = 3.3°
φ & ω scansh = −17→18
Absorption correction: multi-scan (SADABS; Sheldrick, 2007)k = −11→11
Tmin = 0.927, Tmax = 0.963l = −15→16
9021 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.042H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.098w = 1/[σ2(Fo2) + (0.0435P)2 + 0.009P] where P = (Fo2 + 2Fc2)/3
S = 1.06(Δ/σ)max < 0.001
3197 reflectionsΔρmax = 0.32 e Å3
239 parametersΔρmin = −0.41 e Å3
5 restraintsAbsolute structure: Flack (1983), 1504 Friedel pairs
Primary atom site location: structure-invariant direct methodsFlack parameter: 0.12 (8)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl10.88627 (8)0.03391 (10)0.90846 (8)0.0280 (2)
S10.94030 (7)0.63949 (10)0.76867 (7)0.0226 (2)
S20.77245 (7)0.12532 (10)0.65142 (8)0.0241 (2)
S31.04262 (8)0.75479 (12)1.17195 (8)0.0262 (2)
O10.9673 (2)0.6291 (3)0.6804 (2)0.0285 (7)
O20.8556 (2)0.7293 (3)0.7536 (2)0.0272 (7)
O30.7388 (2)0.2033 (3)0.5523 (2)0.0348 (7)
O40.6988 (2)0.0628 (3)0.6808 (2)0.0344 (7)
N11.0394 (2)0.6927 (4)0.8780 (3)0.0228 (7)
N21.0131 (3)0.5322 (3)0.9992 (3)0.0214 (7)
H1N1.043 (4)0.502 (6)1.067 (2)0.052 (16)*
N30.8417 (3)−0.0017 (4)0.6449 (3)0.0255 (8)
H2N0.892 (3)0.022 (5)0.631 (4)0.050 (16)*
H3N0.856 (4)−0.066 (4)0.696 (3)0.041 (15)*
C11.0167 (3)0.6786 (4)0.9736 (3)0.0233 (9)
H10.94790.71950.95310.028*
C20.9619 (3)0.4380 (4)0.9200 (3)0.0192 (8)
C30.9196 (3)0.4722 (4)0.8079 (3)0.0193 (8)
C40.8626 (3)0.3757 (4)0.7286 (3)0.0188 (8)
H40.83280.40270.65410.023*
C50.8483 (3)0.2403 (4)0.7563 (3)0.0199 (8)
C60.8960 (3)0.2032 (4)0.8677 (3)0.0192 (8)
C70.9523 (3)0.2976 (4)0.9475 (3)0.0206 (8)
H70.98490.26861.02150.025*
C81.1391 (3)0.6397 (5)0.8917 (3)0.0289 (10)
H8A1.19330.69810.94470.043*
H8B1.14210.64300.82160.043*
H8C1.14800.54280.91800.043*
C91.0919 (3)0.7580 (4)1.0712 (3)0.0251 (9)
H9A1.09850.85571.05090.030*
H9B1.15950.71291.10040.030*
C101.1529 (3)0.8004 (6)1.2942 (3)0.0360 (11)
H10A1.15190.74721.35580.043*
H10B1.21430.77151.28650.043*
C111.1605 (4)0.9502 (6)1.3201 (4)0.0438 (13)
F11.2461 (3)0.9823 (5)1.4089 (3)0.0842 (14)
F21.1618 (3)1.0300 (4)1.2398 (3)0.0708 (10)
F31.0838 (2)0.9967 (4)1.3395 (3)0.0656 (10)
U11U22U33U12U13U23
Cl10.0427 (6)0.0181 (5)0.0234 (5)−0.0054 (4)0.0147 (4)−0.0008 (4)
S10.0297 (5)0.0179 (5)0.0215 (5)0.0026 (4)0.0125 (4)0.0038 (4)
S20.0276 (5)0.0226 (6)0.0185 (5)−0.0012 (5)0.0069 (4)−0.0028 (4)
S30.0322 (5)0.0254 (6)0.0257 (5)−0.0050 (4)0.0172 (4)−0.0072 (4)
O10.0404 (17)0.0296 (17)0.0201 (15)−0.0011 (13)0.0175 (13)0.0038 (12)
O20.0278 (15)0.0215 (16)0.0331 (17)0.0057 (13)0.0141 (13)0.0059 (13)
O30.0458 (18)0.0267 (17)0.0168 (15)0.0028 (14)0.0000 (12)−0.0001 (12)
O40.0300 (16)0.0406 (19)0.0346 (18)−0.0126 (15)0.0161 (14)−0.0130 (15)
N10.0321 (19)0.0193 (18)0.0214 (18)−0.0022 (15)0.0157 (15)−0.0036 (14)
N20.0327 (18)0.0143 (17)0.0176 (18)−0.0026 (14)0.0116 (15)0.0015 (13)
N30.034 (2)0.020 (2)0.025 (2)0.0027 (16)0.0156 (16)−0.0014 (15)
C10.036 (2)0.017 (2)0.021 (2)−0.0040 (18)0.0165 (17)−0.0021 (16)
C20.0214 (19)0.019 (2)0.017 (2)0.0023 (16)0.0083 (16)−0.0020 (16)
C30.024 (2)0.016 (2)0.019 (2)0.0041 (16)0.0111 (16)0.0020 (16)
C40.0179 (18)0.019 (2)0.017 (2)0.0053 (16)0.0061 (15)0.0013 (16)
C50.022 (2)0.019 (2)0.019 (2)−0.0006 (17)0.0092 (17)−0.0054 (16)
C60.0242 (19)0.017 (2)0.018 (2)0.0004 (16)0.0109 (16)0.0005 (16)
C70.028 (2)0.019 (2)0.0131 (19)−0.0031 (17)0.0075 (15)0.0003 (15)
C80.021 (2)0.041 (3)0.025 (2)0.0011 (19)0.0104 (17)0.0052 (19)
C90.032 (2)0.023 (2)0.021 (2)0.0007 (18)0.0118 (17)−0.0009 (17)
C100.033 (2)0.054 (3)0.020 (2)0.004 (2)0.0101 (18)−0.002 (2)
C110.040 (3)0.054 (4)0.044 (3)−0.020 (2)0.024 (2)−0.021 (3)
F10.066 (2)0.128 (4)0.062 (2)−0.063 (2)0.0310 (18)−0.056 (2)
F20.095 (2)0.052 (2)0.072 (2)−0.0414 (19)0.043 (2)−0.0140 (18)
F30.069 (2)0.052 (2)0.095 (3)−0.0182 (17)0.053 (2)−0.0440 (19)
Cl1—C61.736 (4)C2—C31.415 (5)
S1—O11.429 (3)C2—C71.416 (6)
S1—O21.448 (3)C3—C41.388 (5)
S1—N11.640 (3)C4—C51.390 (5)
S1—C31.753 (4)C4—H40.9500
S2—O31.430 (3)C5—C61.412 (5)
S2—O41.437 (3)C6—C71.375 (5)
S2—N31.610 (4)C7—H70.9500
S2—C51.759 (4)C8—H8A0.9800
S3—C101.794 (4)C8—H8B0.9800
S3—C91.816 (4)C8—H8C0.9800
N1—C81.480 (5)C9—H9A0.9900
N1—C11.490 (5)C9—H9B0.9900
N2—C21.353 (5)C10—C111.467 (7)
N2—C11.447 (5)C10—H10A0.9900
N2—H1N0.88 (2)C10—H10B0.9900
N3—H2N0.87 (2)C11—F31.340 (6)
N3—H3N0.884 (19)C11—F21.343 (6)
C1—C91.508 (5)C11—F11.343 (6)
C1—H11.0000
O1—S1—O2117.39 (17)C3—C4—H4119.5
O1—S1—N1109.12 (17)C5—C4—H4119.5
O2—S1—N1107.83 (17)C4—C5—C6117.7 (3)
O1—S1—C3110.15 (18)C4—C5—S2118.4 (3)
O2—S1—C3109.29 (18)C6—C5—S2123.9 (3)
N1—S1—C3101.91 (18)C7—C6—C5122.0 (4)
O3—S2—O4119.56 (19)C7—C6—Cl1117.5 (3)
O3—S2—N3107.61 (19)C5—C6—Cl1120.5 (3)
O4—S2—N3105.8 (2)C6—C7—C2120.3 (3)
O3—S2—C5106.11 (18)C6—C7—H7119.8
O4—S2—C5108.34 (18)C2—C7—H7119.8
N3—S2—C5109.11 (19)N1—C8—H8A109.5
C10—S3—C9101.8 (2)N1—C8—H8B109.5
C8—N1—C1116.6 (3)H8A—C8—H8B109.5
C8—N1—S1116.0 (3)N1—C8—H8C109.5
C1—N1—S1108.8 (2)H8A—C8—H8C109.5
C2—N2—C1121.0 (3)H8B—C8—H8C109.5
C2—N2—H1N118 (4)C1—C9—S3106.4 (3)
C1—N2—H1N121 (4)C1—C9—H9A110.5
S2—N3—H2N116 (4)S3—C9—H9A110.5
S2—N3—H3N115 (3)C1—C9—H9B110.5
H2N—N3—H3N115 (5)S3—C9—H9B110.5
N2—C1—N1110.2 (3)H9A—C9—H9B108.6
N2—C1—C9111.2 (3)C11—C10—S3113.7 (4)
N1—C1—C9111.8 (3)C11—C10—H10A108.8
N2—C1—H1107.8S3—C10—H10A108.8
N1—C1—H1107.8C11—C10—H10B108.8
C9—C1—H1107.8S3—C10—H10B108.8
N2—C2—C3122.5 (4)H10A—C10—H10B107.7
N2—C2—C7120.1 (3)F3—C11—F2106.8 (5)
C3—C2—C7117.3 (3)F3—C11—F1106.1 (4)
C4—C3—C2121.2 (4)F2—C11—F1105.4 (4)
C4—C3—S1119.5 (3)F3—C11—C10113.0 (4)
C2—C3—S1119.3 (3)F2—C11—C10112.5 (4)
C3—C4—C5121.1 (3)F1—C11—C10112.5 (5)
D—H···AD—HH···AD···AD—H···A
N2—H1N···O4i0.88 (2)2.21 (4)2.906 (4)135 (4)
N2—H1N···O1ii0.88 (2)2.59 (4)3.230 (4)130 (4)
N3—H3N···O2iii0.88 (2)2.11 (3)2.929 (5)154 (5)
C10—H10B···O2iv0.992.313.267 (5)163
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N⋯O4i0.88 (2)2.21 (4)2.906 (4)135 (4)
N2—H1N⋯O1ii0.88 (2)2.59 (4)3.230 (4)130 (4)
N3—H3N⋯O2iii0.88 (2)2.11 (3)2.929 (5)154 (5)
C10—H10B⋯O2iv0.992.313.267 (5)163

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  Hirshfeld surface analysis of two bendroflumethiazide solvates.

Authors:  Francesca P A Fabbiani; Charlotte K Leech; Kenneth Shankland; Andrea Johnston; Philippe Fernandes; Alastair J Florence; Norman Shankland
Journal:  Acta Crystallogr C       Date:  2007-10-24       Impact factor: 1.172

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Solving molecular crystal structures from X-ray powder diffraction data: the challenges posed by gamma-carbamazepine and chlorothiazide N,N,-dimethylformamide (1/2) solvate.

Authors:  Philippe Fernandes; Kenneth Shankland; Alastair J Florence; Norman Shankland; Andrea Johnston
Journal:  J Pharm Sci       Date:  2007-05       Impact factor: 3.534

4.  Chloro-thia-zide-pyridine (1/3).

Authors:  Andrea Johnston; Alastair J Florence; Alan R Kennedy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-05-17
  4 in total

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