Literature DB >> 21587734

Bis(1,10-phenanthroline-κN,N')(sulfato-κO,O')cadmium(II) propane-1,3-diol solvate.

Kai-Long Zhong1, Jiang-Dong Cui.   

Abstract

In the title compound, [Cd(SO(4))(C(12)H(8)N(2))(2)]·C(3)H(8)O(2), the Cd(II) atom has a distorted octa-hedral coordination composed of four N atoms from two chelating 1,10-phenanthroline ligands and two O atoms from an O,O'-bidentate sulfate group. The two chelating NCCN groups subtend a dihedral angle of 82.21 (9)°. The Cd(II) ion, the S atom and the middle C atom of the propane-1,3-diol solvent mol-ecule are located on special positions, site symmetry 2. The solvate features a pair of O-H⋯O hydrogen bonds with the uncoordinated O atoms of the sulfate ion. The OH group of the propane-1,3-diol solvent is disordered over two positions of equal occupancy.

Entities:  

Year:  2010        PMID: 21587734      PMCID: PMC3006862          DOI: 10.1107/S1600536810022518

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For isostructural compounds, see: Cui et al. (2010 ▶); Ni et al. (2010 ▶); Zhong (2010a ▶). For the ethane-1,2-diol solvate of the title complex, see: Lu et al. (2006 ▶). For background to bidentate-chelating sulfate complexes, see: Zhong et al. (2006 ▶, 2010b ▶); Zhu et al. (2006 ▶). For the preparation, see: Zhong et al. (2010a ▶). For background to coordination polymers, see: Batten & Robson (1998 ▶); Eddaoudi et al. (2001 ▶); Li et al. (2003 ▶).

Experimental

Crystal data

[Cd(SO4)(C12H8N2)2]·C3H8O2 M = 644.98 Monoclinic, a = 17.854 (4) Å b = 12.520 (3) Å c = 13.519 (3) Å β = 123.01 (3)° V = 2534.1 (13) Å3 Z = 4 Mo Kα radiation μ = 1.00 mm−1 T = 223 K 0.40 × 0.30 × 0.20 mm

Data collection

Rigaku Mercury CCD diffractometer Absorption correction: multi-scan (REQAB; Jacobson, 1998 ▶) T min = 0.691, T max = 0.826 8349 measured reflections 2880 independent reflections 2683 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.028 wR(F 2) = 0.072 S = 1.10 2880 reflections 178 parameters 3 restraints H-atom parameters constrained Δρmax = 0.75 e Å−3 Δρmin = −0.65 e Å−3 Data collection: CrystalClear (Rigaku, 2007 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: XP in SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810022518/bq2222sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810022518/bq2222Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Cd(SO4)(C12H8N2)2]·C3H8O2F(000) = 1304
Mr = 644.98Dx = 1.691 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 3776 reflections
a = 17.854 (4) Åθ = 3.1–27.5°
b = 12.520 (3) ŵ = 1.00 mm1
c = 13.519 (3) ÅT = 223 K
β = 123.01 (3)°Block, colorless
V = 2534.1 (13) Å30.40 × 0.30 × 0.20 mm
Z = 4
Rigaku Mercury CCD diffractometer2880 independent reflections
Radiation source: fine-focus sealed tube2683 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 28.5714 pixels mm-1θmax = 27.5°, θmin = 3.1°
ω scansh = −19→23
Absorption correction: multi-scan (REQAB; Jacobson, 1998)k = −12→16
Tmin = 0.691, Tmax = 0.826l = −17→12
8349 measured reflections
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.028H-atom parameters constrained
wR(F2) = 0.072w = 1/[σ2(Fo2) + (0.0391P)2 + 2.1837P] where P = (Fo2 + 2Fc2)/3
S = 1.10(Δ/σ)max < 0.001
2880 reflectionsΔρmax = 0.75 e Å3
178 parametersΔρmin = −0.65 e Å3
3 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0053 (3)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
Cd10.50000.174163 (16)0.25000.02229 (10)
S10.5000−0.06039 (5)0.25000.01961 (16)
O10.51467 (11)0.01117 (13)0.34685 (14)0.0300 (3)
O20.57895 (10)−0.12744 (13)0.29112 (15)0.0306 (4)
N10.39140 (11)0.29051 (15)0.10875 (16)0.0222 (4)
N20.40091 (11)0.21462 (15)0.30577 (17)0.0234 (4)
C70.27252 (14)0.31996 (16)0.2610 (2)0.0237 (4)
C90.34479 (16)0.2062 (2)0.4312 (2)0.0306 (5)
H9A0.34980.17800.49820.037*
C20.32079 (15)0.39930 (19)−0.0655 (2)0.0295 (5)
H2A0.31940.4232−0.13160.035*
C80.27880 (15)0.27765 (19)0.3615 (2)0.0290 (5)
H8A0.23810.29830.38060.035*
C100.40478 (16)0.17602 (17)0.4000 (2)0.0275 (5)
H10A0.44930.12680.44720.033*
C60.20366 (14)0.39348 (18)0.1827 (2)0.0282 (5)
H6A0.16190.41590.19910.034*
C110.33584 (13)0.28613 (16)0.23634 (19)0.0207 (4)
C50.19881 (15)0.43057 (17)0.0856 (2)0.0272 (5)
H5A0.15340.47770.03570.033*
C40.26246 (13)0.39846 (17)0.05810 (19)0.0232 (4)
C30.25909 (15)0.43470 (18)−0.0429 (2)0.0283 (5)
H3A0.21500.4826−0.09410.034*
C10.38597 (16)0.32669 (17)0.0124 (2)0.0268 (5)
H1A0.42740.3025−0.00390.032*
C120.33059 (14)0.32544 (15)0.13234 (19)0.0204 (4)
C140.5000−0.4518 (3)0.25000.0452 (10)
O30.55944 (17)−0.32203 (16)0.1763 (2)0.0548 (6)
H3B0.5502−0.26070.18830.082*
C13'0.5787 (6)−0.3855 (7)0.2714 (7)0.084 (2)*0.50
H13A0.5986−0.34010.33960.101*0.50
H13B0.6276−0.43300.28970.101*0.50
C130.4872 (3)−0.3854 (4)0.1485 (4)0.0295 (10)*0.50
H13E0.4749−0.43290.08460.035*0.50
H13C0.4354−0.34000.12010.035*0.50
H14A0.4484−0.49760.22160.035*
U11U22U33U12U13U23
Cd10.01994 (13)0.02154 (14)0.02924 (15)0.0000.01589 (10)0.000
S10.0176 (3)0.0208 (4)0.0207 (4)0.0000.0106 (3)0.000
O10.0381 (9)0.0256 (7)0.0242 (8)0.0034 (7)0.0156 (7)−0.0016 (6)
O20.0249 (8)0.0319 (9)0.0366 (9)0.0073 (6)0.0178 (7)0.0025 (7)
N10.0218 (9)0.0223 (9)0.0254 (9)−0.0008 (7)0.0147 (7)−0.0011 (7)
N20.0227 (9)0.0231 (9)0.0274 (10)0.0011 (7)0.0155 (8)0.0017 (7)
C70.0225 (10)0.0246 (11)0.0262 (11)−0.0013 (7)0.0147 (9)−0.0048 (9)
C90.0363 (12)0.0335 (12)0.0301 (12)0.0001 (10)0.0234 (11)0.0029 (10)
C20.0349 (12)0.0303 (12)0.0250 (11)−0.0036 (10)0.0174 (10)0.0012 (10)
C80.0297 (11)0.0317 (12)0.0341 (13)0.0002 (9)0.0229 (10)−0.0019 (10)
C100.0273 (11)0.0278 (12)0.0304 (12)0.0026 (8)0.0177 (10)0.0051 (9)
C60.0236 (10)0.0301 (12)0.0332 (12)0.0040 (8)0.0170 (9)−0.0054 (10)
C110.0198 (9)0.0191 (10)0.0247 (11)−0.0017 (7)0.0131 (8)−0.0027 (8)
C50.0235 (10)0.0252 (11)0.0292 (12)0.0045 (8)0.0119 (9)−0.0017 (9)
C40.0224 (10)0.0204 (10)0.0243 (10)−0.0011 (8)0.0112 (8)−0.0030 (8)
C30.0271 (11)0.0266 (12)0.0257 (11)0.0009 (8)0.0107 (9)0.0016 (9)
C10.0293 (11)0.0276 (12)0.0293 (12)−0.0022 (8)0.0196 (10)−0.0023 (9)
C120.0189 (9)0.0192 (10)0.0231 (10)−0.0022 (7)0.0115 (8)−0.0029 (8)
C140.050 (2)0.0260 (19)0.060 (3)0.0000.030 (2)0.000
O30.0824 (17)0.0422 (12)0.0729 (16)−0.0064 (10)0.0636 (15)−0.0086 (10)
Cd1—N2i2.3255 (19)C8—H8A0.9300
Cd1—N22.3255 (19)C10—H10A0.9300
Cd1—N1i2.344 (2)C6—C51.351 (3)
Cd1—N12.3439 (19)C6—H6A0.9300
Cd1—O1i2.3608 (17)C11—C121.444 (3)
Cd1—O12.3608 (17)C5—C41.432 (3)
Cd1—S12.9366 (10)C5—H5A0.9300
S1—O2i1.4652 (16)C4—C31.409 (3)
S1—O21.4652 (16)C4—C121.412 (3)
S1—O11.4873 (17)C3—H3A0.9300
S1—O1i1.4873 (17)C1—H1A0.9300
N1—C11.332 (3)C14—C13i1.512 (5)
N1—C121.360 (3)C14—C131.512 (5)
N2—C101.328 (3)C14—C13'1.518 (9)
N2—C111.358 (3)C14—C13'i1.518 (9)
C7—C81.405 (3)C14—H14A0.9699
C7—C111.407 (3)O3—C131.380 (5)
C7—C61.436 (3)O3—C13'1.385 (7)
C9—C81.367 (3)O3—H3B0.8200
C9—C101.400 (3)C13'—H13A0.9700
C9—H9A0.9300C13'—H13B0.9700
C2—C31.367 (3)C13—H13E0.9700
C2—C11.398 (3)C13—H13C0.9700
C2—H2A0.9300
N2i—Cd1—N2154.84 (9)N2—C10—C9122.8 (2)
N2i—Cd1—N1i72.00 (7)N2—C10—H10A118.6
N2—Cd1—N1i92.19 (7)C9—C10—H10A118.6
N2i—Cd1—N192.19 (7)C5—C6—C7120.8 (2)
N2—Cd1—N172.00 (7)C5—C6—H6A119.6
N1i—Cd1—N1103.15 (9)C7—C6—H6A119.6
N2i—Cd1—O1i83.26 (6)N2—C11—C7122.0 (2)
N2—Cd1—O1i119.60 (6)N2—C11—C12118.37 (18)
N1i—Cd1—O1i141.41 (6)C7—C11—C12119.60 (19)
N1—Cd1—O1i107.02 (6)C6—C5—C4121.1 (2)
N2i—Cd1—O1119.60 (6)C6—C5—H5A119.5
N2—Cd1—O183.26 (6)C4—C5—H5A119.5
N1i—Cd1—O1107.02 (6)C3—C4—C12117.6 (2)
N1—Cd1—O1141.41 (6)C3—C4—C5122.7 (2)
O1i—Cd1—O160.38 (8)C12—C4—C5119.7 (2)
N2i—Cd1—S1102.58 (5)C2—C3—C4119.9 (2)
N2—Cd1—S1102.58 (5)C2—C3—H3A120.1
N1i—Cd1—S1128.42 (5)C4—C3—H3A120.1
N1—Cd1—S1128.42 (5)N1—C1—C2123.0 (2)
O1i—Cd1—S130.19 (4)N1—C1—H1A118.5
O1—Cd1—S130.19 (4)C2—C1—H1A118.5
O2i—S1—O2110.10 (14)N1—C12—C4122.0 (2)
O2i—S1—O1110.53 (10)N1—C12—C11118.83 (18)
O2—S1—O1109.85 (10)C4—C12—C11119.14 (19)
O2i—S1—O1i109.85 (10)C13i—C14—C13113.3 (4)
O2—S1—O1i110.53 (10)C13i—C14—C13'82.0 (4)
O1—S1—O1i105.92 (14)C13—C14—C13'62.5 (4)
O2i—S1—Cd1124.95 (7)C13i—C14—C13'i62.5 (4)
O2—S1—Cd1124.95 (7)C13—C14—C13'i82.0 (4)
O1—S1—Cd152.96 (7)C13'—C14—C13'i113.7 (8)
O1i—S1—Cd152.96 (7)C13i—C14—H14A109.0
S1—O1—Cd196.85 (8)C13—C14—H14A109.0
C1—N1—C12118.56 (19)C13'—C14—H14A168.7
C1—N1—Cd1126.53 (15)C13'i—C14—H14A70.5
C12—N1—Cd1114.87 (14)C13—O3—C13'69.3 (4)
C10—N2—C11118.73 (19)C13—O3—H3B109.5
C10—N2—Cd1125.46 (15)C13'—O3—H3B109.2
C11—N2—Cd1115.78 (14)O3—C13'—C14113.6 (6)
C8—C7—C11117.7 (2)O3—C13'—H13A108.8
C8—C7—C6122.7 (2)C14—C13'—H13A108.8
C11—C7—C6119.6 (2)O3—C13'—H13B108.8
C8—C9—C10118.8 (2)C14—C13'—H13B108.8
C8—C9—H9A120.6H13A—C13'—H13B107.7
C10—C9—H9A120.6O3—C13—C14114.3 (3)
C3—C2—C1119.0 (2)O3—C13—H13E108.7
C3—C2—H2A120.5C14—C13—H13E108.7
C1—C2—H2A120.5O3—C13—H13C108.7
C9—C8—C7119.9 (2)C14—C13—H13C108.7
C9—C8—H8A120.1H13E—C13—H13C107.6
C7—C8—H8A120.1
N2i—Cd1—S1—O2i−140.99 (10)N1—Cd1—N2—C11−3.31 (14)
N2—Cd1—S1—O2i39.01 (10)O1i—Cd1—N2—C11−103.06 (15)
N1i—Cd1—S1—O2i142.14 (10)O1—Cd1—N2—C11−153.30 (15)
N1—Cd1—S1—O2i−37.86 (10)S1—Cd1—N2—C11−129.96 (14)
O1i—Cd1—S1—O2i−89.51 (12)C10—C9—C8—C7−0.4 (4)
O1—Cd1—S1—O2i90.49 (12)C11—C7—C8—C9−0.1 (3)
N2i—Cd1—S1—O239.01 (10)C6—C7—C8—C9178.6 (2)
N2—Cd1—S1—O2−140.99 (10)C11—N2—C10—C9−0.3 (3)
N1i—Cd1—S1—O2−37.86 (10)Cd1—N2—C10—C9177.81 (17)
N1—Cd1—S1—O2142.14 (10)C8—C9—C10—N20.6 (4)
O1i—Cd1—S1—O290.49 (12)C8—C7—C6—C5−178.6 (2)
O1—Cd1—S1—O2−89.51 (12)C11—C7—C6—C50.0 (3)
N2i—Cd1—S1—O1128.52 (9)C10—N2—C11—C7−0.3 (3)
N2—Cd1—S1—O1−51.48 (9)Cd1—N2—C11—C7−178.50 (15)
N1i—Cd1—S1—O151.65 (10)C10—N2—C11—C12−178.31 (19)
N1—Cd1—S1—O1−128.35 (10)Cd1—N2—C11—C123.4 (2)
O1i—Cd1—S1—O1180.0C8—C7—C11—N20.4 (3)
N2i—Cd1—S1—O1i−51.48 (9)C6—C7—C11—N2−178.3 (2)
N2—Cd1—S1—O1i128.52 (9)C8—C7—C11—C12178.45 (19)
N1i—Cd1—S1—O1i−128.35 (10)C6—C7—C11—C12−0.2 (3)
N1—Cd1—S1—O1i51.65 (10)C7—C6—C5—C4−0.5 (3)
O1—Cd1—S1—O1i180.0C6—C5—C4—C3179.4 (2)
O2i—S1—O1—Cd1−118.93 (9)C6—C5—C4—C121.1 (3)
O2—S1—O1—Cd1119.38 (9)C1—C2—C3—C40.5 (3)
O1i—S1—O1—Cd10.0C12—C4—C3—C2−0.3 (3)
N2i—Cd1—O1—S1−61.43 (10)C5—C4—C3—C2−178.6 (2)
N2—Cd1—O1—S1129.74 (9)C12—N1—C1—C20.3 (3)
N1i—Cd1—O1—S1−140.02 (8)Cd1—N1—C1—C2−177.53 (16)
N1—Cd1—O1—S180.06 (12)C3—C2—C1—N1−0.5 (3)
O1i—Cd1—O1—S10.0C1—N1—C12—C40.0 (3)
N2i—Cd1—N1—C120.70 (18)Cd1—N1—C12—C4178.00 (15)
N2—Cd1—N1—C1−179.26 (19)C1—N1—C12—C11179.70 (19)
N1i—Cd1—N1—C192.72 (18)Cd1—N1—C12—C11−2.3 (2)
O1i—Cd1—N1—C1−62.92 (19)C3—C4—C12—N10.1 (3)
O1—Cd1—N1—C1−126.49 (17)C5—C4—C12—N1178.45 (19)
S1—Cd1—N1—C1−87.28 (18)C3—C4—C12—C11−179.68 (19)
N2i—Cd1—N1—C12−157.16 (14)C5—C4—C12—C11−1.3 (3)
N2—Cd1—N1—C122.88 (14)N2—C11—C12—N1−0.8 (3)
N1i—Cd1—N1—C12−85.14 (14)C7—C11—C12—N1−178.89 (19)
O1i—Cd1—N1—C12119.22 (14)N2—C11—C12—C4178.97 (19)
O1—Cd1—N1—C1255.65 (18)C7—C11—C12—C40.9 (3)
S1—Cd1—N1—C1294.86 (14)C13—O3—C13'—C14−4.0 (5)
N2i—Cd1—N2—C10−128.08 (18)C13i—C14—C13'—O3−117.7 (7)
N1i—Cd1—N2—C10−78.30 (19)C13—C14—C13'—O33.9 (5)
N1—Cd1—N2—C10178.6 (2)C13'i—C14—C13'—O3−62.5 (5)
O1i—Cd1—N2—C1078.82 (19)C13'—O3—C13—C144.1 (5)
O1—Cd1—N2—C1028.59 (18)C13i—C14—C13—O362.8 (3)
S1—Cd1—N2—C1051.92 (18)C13'—C14—C13—O3−3.9 (5)
N2i—Cd1—N2—C1150.04 (14)C13'i—C14—C13—O3118.1 (4)
N1i—Cd1—N2—C1199.81 (15)
D—H···AD—HH···AD···AD—H···A
O3—H3B···O20.822.052.806 (3)153
Table 1

Selected bond lengths (Å)

Cd1—N22.3255 (19)
Cd1—N12.3439 (19)
Cd1—O12.3608 (17)
S1—O21.4652 (16)
S1—O11.4873 (17)
Table 2

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H3B⋯O20.822.052.806 (3)153
  7 in total

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Authors:  Kai-Long Zhong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-09

5.  Bis(1,10-phenanthroline-κN,N')(sulfato-κO,O')cobalt(II) propane-1,3-diol solvate.

Authors:  Kai-Long Zhong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-02-03

6.  Bis(1,10-phenanthroline-κN,N')(sulfato-κO,O')zinc(II) propane-1,3-diol solvate.

Authors:  Jiang-Dong Cui; Kai-Long Zhong; Yan-Yun Liu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-04-24

7.  Bis(1,10-phenanthroline-κN,N')(sulfato-κO,O')nickel(II) propane-1,3-diol solvate.

Authors:  Chao Ni; Kai-Long Zhong; Jiang-Dong Cui
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-06-05
  7 in total
  2 in total

1.  Diaqua-bis-(1,10-phenanthroline-κN,N')cadmium sulfate hexa-hydrate.

Authors:  Kai-Long Zhong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-10-29

2.  Bis(1,10-phenanthroline-κN,N')(sulfato-O)copper(II) ethane-1,2-diol monosolvate.

Authors:  Kai-Long Zhong
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-08-11
  2 in total

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