Literature DB >> 21587678

Diaqua-(1,4,8,11-tetra-aza-cyclo-tetra-deca-ne)nickel(II) fumarate tetra-hydrate.

Shao Liang Lim, Chew Hee Ng, Siang Guan Teoh, Wan-Sin Loh, Hoong-Kun Fun.   

Abstract

The asymmetric unit of the title complex salt, [Ni(C(10)H(24)N(4))(H(2)O)(2)](C(4)H(2)O(4))·4H(2)O, comprises half of a nickel(II) complex dication, half of a fumarate dianion and two water mol-ecules. Both the Ni(II) cation and fumarate anion lie on a crystallographic inversion center. The Ni(II) ion in the cyclam complex is six-coordinated within a distorted N(4)O(2) octa-hedral geometry, with the four cyclam N atoms in the equatorial plane and the two water mol-ecules in apical positions. The six-membered metalla ring adopts a chair conformation, whereas the five-membered ring exists in a twisted form. In the crystal packing, inter-molecular O-H⋯O hydrogen bonds between the water molecules and the carboxyl groups of the fumarate anions lead to the formation of layers with R(4) (2)(8) ring motifs. Ni(II) complex cations are sandwiched between two such layers, being held in place by O-H⋯O, N-H⋯O and C-H⋯O hydrogen bonds, consolidating a three-dimensional network.

Entities:  

Year:  2010        PMID: 21587678      PMCID: PMC3007087          DOI: 10.1107/S1600536810020064

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the background to and the biological activity of cyclam, see: Kim et al. (2006 ▶); Hunter et al. (2006 ▶); Gerlach et al. (2003 ▶); Paisey & Sadler (2004 ▶). For a related structure, see: Panneerselvam et al. (1999 ▶). For puckering parameters, see: Cremer & Pople (1975 ▶). For hydrogen-bond motifs, see: Bernstein et al. (1995 ▶). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

[Ni(C10H24N4)(H2O)2](C4H2O4)·4H2O M = 481.19 Triclinic, a = 6.9913 (5) Å b = 8.8313 (7) Å c = 9.3147 (8) Å α = 73.165 (2)° β = 79.207 (2)° γ = 85.227 (2)° V = 540.47 (7) Å3 Z = 1 Mo Kα radiation μ = 0.95 mm−1 T = 100 K 0.47 × 0.44 × 0.24 mm

Data collection

Bruker APEXII DUO CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2009 ▶) T min = 0.665, T max = 0.805 12800 measured reflections 4295 independent reflections 4219 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.035 wR(F 2) = 0.133 S = 1.30 4295 reflections 142 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.27 e Å−3 Δρmin = −1.18 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810020064/tk2677sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810020064/tk2677Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C10H24N4)(H2O)2](C4H2O4)·4H2OZ = 1
Mr = 481.19F(000) = 258
Triclinic, P1Dx = 1.478 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.9913 (5) ÅCell parameters from 9982 reflections
b = 8.8313 (7) Åθ = 3.8–35.1°
c = 9.3147 (8) ŵ = 0.95 mm1
α = 73.165 (2)°T = 100 K
β = 79.207 (2)°Block, purple
γ = 85.227 (2)°0.47 × 0.44 × 0.24 mm
V = 540.47 (7) Å3
Bruker APEXII DUO CCD area-detector diffractometer4295 independent reflections
Radiation source: fine-focus sealed tube4219 reflections with I > 2σ(I)
graphiteRint = 0.017
φ and ω scansθmax = 34.0°, θmin = 3.0°
Absorption correction: multi-scan (SADABS; Bruker, 2009)h = −10→10
Tmin = 0.665, Tmax = 0.805k = −13→13
12800 measured reflectionsl = −14→14
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.133w = 1/[σ2(Fo2) + (0.0892P)2 + 0.062P] where P = (Fo2 + 2Fc2)/3
S = 1.30(Δ/σ)max < 0.001
4295 reflectionsΔρmax = 1.27 e Å3
142 parametersΔρmin = −1.18 e Å3
0 restraintsExtinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.75 (4)
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni11.00000.50000.00000.00889 (11)
O1W0.70136 (13)0.43457 (11)0.07879 (11)0.01471 (17)
H1W10.58190.42840.11990.022*
H2W10.76310.35780.13130.022*
N10.90487 (15)0.73294 (12)−0.04325 (12)0.01220 (18)
N20.97429 (15)0.48188 (12)−0.21216 (12)0.01229 (18)
C10.97192 (19)0.83674 (14)−0.19756 (15)0.0160 (2)
H1A1.11170.8476−0.21250.019*
H1B0.91080.9411−0.20680.019*
C20.9231 (2)0.77130 (15)−0.32091 (15)0.0188 (2)
H2A0.78530.7497−0.29800.023*
H2B0.94610.8528−0.41730.023*
C31.0368 (2)0.62134 (16)−0.34023 (14)0.0168 (2)
H3A1.01780.6032−0.43440.020*
H3B1.17460.6357−0.34740.020*
C41.08394 (18)0.33580 (15)−0.22827 (14)0.0154 (2)
H4A1.22200.3563−0.25780.018*
H4B1.04240.3011−0.30700.018*
C50.95195 (18)0.79227 (14)0.07821 (15)0.0144 (2)
H5A0.87130.88550.08550.017*
H5B1.08730.82170.05450.017*
O10.52695 (16)0.26163 (11)0.55707 (11)0.01632 (18)
O20.52311 (19)0.08177 (12)0.78098 (11)0.0224 (2)
C110.51455 (17)0.12258 (13)0.64080 (13)0.0124 (2)
C120.48943 (17)−0.00891 (13)0.57443 (12)0.0121 (2)
H12A0.4574−0.10800.64080.014*
O2W0.52940 (14)0.20503 (11)0.01387 (11)0.01441 (17)
H1W20.58310.1689−0.05970.022*
H2W20.52510.12970.09540.022*
O3W0.42354 (14)0.50357 (11)0.31238 (11)0.01463 (18)
H1W30.41700.58980.33620.022*
H2W30.39930.42910.39480.022*
H1N10.779 (3)0.719 (3)−0.034 (3)0.018 (5)*
H1N20.849 (3)0.463 (3)−0.210 (3)0.015 (5)*
U11U22U33U12U13U23
Ni10.00948 (13)0.00806 (13)0.00991 (13)−0.00033 (7)−0.00201 (7)−0.00347 (8)
O1W0.0114 (4)0.0161 (4)0.0187 (4)−0.0023 (3)−0.0003 (3)−0.0089 (3)
N10.0115 (4)0.0103 (4)0.0151 (4)−0.0006 (3)−0.0026 (3)−0.0038 (3)
N20.0125 (4)0.0134 (4)0.0120 (4)−0.0008 (3)−0.0025 (3)−0.0047 (3)
C10.0183 (5)0.0108 (4)0.0175 (5)−0.0020 (4)−0.0043 (4)−0.0006 (4)
C20.0237 (6)0.0158 (5)0.0163 (5)−0.0013 (4)−0.0087 (4)−0.0003 (4)
C30.0212 (5)0.0180 (5)0.0111 (4)−0.0034 (4)−0.0030 (4)−0.0029 (4)
C40.0170 (5)0.0161 (5)0.0153 (5)−0.0003 (4)−0.0011 (4)−0.0089 (4)
C50.0143 (5)0.0117 (4)0.0193 (5)−0.0008 (3)−0.0023 (4)−0.0080 (4)
O10.0251 (5)0.0105 (4)0.0131 (4)−0.0020 (3)−0.0028 (3)−0.0029 (3)
O20.0434 (6)0.0145 (4)0.0110 (4)−0.0018 (4)−0.0080 (4)−0.0041 (3)
C110.0158 (5)0.0113 (4)0.0110 (4)−0.0002 (3)−0.0017 (3)−0.0050 (3)
C120.0153 (5)0.0107 (4)0.0105 (4)−0.0004 (3)−0.0019 (3)−0.0037 (3)
O2W0.0174 (4)0.0131 (4)0.0146 (4)−0.0020 (3)−0.0032 (3)−0.0061 (3)
O3W0.0175 (4)0.0144 (4)0.0134 (4)−0.0017 (3)−0.0034 (3)−0.0052 (3)
Ni1—N1i2.0564 (10)C2—H2B0.9700
Ni1—N12.0565 (10)C3—H3A0.9700
Ni1—N22.0699 (10)C3—H3B0.9700
Ni1—N2i2.0699 (10)C4—C5i1.5153 (18)
Ni1—O1W2.1478 (9)C4—H4A0.9700
Ni1—O1Wi2.1478 (9)C4—H4B0.9700
O1W—H1W10.8499C5—C4i1.5153 (18)
O1W—H2W10.8506C5—H5A0.9700
N1—C51.4747 (16)C5—H5B0.9700
N1—C11.4772 (17)O1—C111.2496 (14)
N1—H1N10.88 (2)O2—C111.2615 (14)
N2—C31.4745 (16)C11—C121.5007 (16)
N2—C41.4761 (16)C12—C12ii1.330 (2)
N2—H1N20.90 (2)C12—H12A0.9300
C1—C21.5279 (19)O2W—H1W20.8501
C1—H1A0.9700O2W—H2W20.8496
C1—H1B0.9700O3W—H1W30.8482
C2—C31.5253 (19)O3W—H2W30.8537
C2—H2A0.9700
N1i—Ni1—N1180.0C2—C1—H1B109.2
N1i—Ni1—N285.49 (4)H1A—C1—H1B107.9
N1—Ni1—N294.51 (4)C3—C2—C1115.74 (11)
N1i—Ni1—N2i94.51 (4)C3—C2—H2A108.3
N1—Ni1—N2i85.49 (4)C1—C2—H2A108.3
N2—Ni1—N2i179.999 (1)C3—C2—H2B108.3
N1i—Ni1—O1W91.94 (4)C1—C2—H2B108.3
N1—Ni1—O1W88.06 (4)H2A—C2—H2B107.4
N2—Ni1—O1W88.73 (4)N2—C3—C2111.79 (10)
N2i—Ni1—O1W91.27 (4)N2—C3—H3A109.3
N1i—Ni1—O1Wi88.06 (4)C2—C3—H3A109.3
N1—Ni1—O1Wi91.94 (4)N2—C3—H3B109.3
N2—Ni1—O1Wi91.27 (4)C2—C3—H3B109.3
N2i—Ni1—O1Wi88.73 (4)H3A—C3—H3B107.9
O1W—Ni1—O1Wi180.0N2—C4—C5i109.50 (10)
Ni1—O1W—H1W1165.2N2—C4—H4A109.8
Ni1—O1W—H2W177.0C5i—C4—H4A109.8
H1W1—O1W—H2W1107.7N2—C4—H4B109.8
C5—N1—C1113.05 (9)C5i—C4—H4B109.8
C5—N1—Ni1106.83 (7)H4A—C4—H4B108.2
C1—N1—Ni1116.66 (8)N1—C5—C4i109.30 (9)
C5—N1—H1N1112.6 (16)N1—C5—H5A109.8
C1—N1—H1N1108.2 (16)C4i—C5—H5A109.8
Ni1—N1—H1N198.8 (16)N1—C5—H5B109.8
C3—N2—C4112.55 (10)C4i—C5—H5B109.8
C3—N2—Ni1114.93 (8)H5A—C5—H5B108.3
C4—N2—Ni1105.98 (7)O1—C11—O2124.55 (11)
C3—N2—H1N2109.8 (15)O1—C11—C12119.64 (10)
C4—N2—H1N2105.3 (14)O2—C11—C12115.81 (10)
Ni1—N2—H1N2107.8 (15)C12ii—C12—C11123.39 (13)
N1—C1—C2111.84 (10)C12ii—C12—H12A118.3
N1—C1—H1A109.2C11—C12—H12A118.3
C2—C1—H1A109.2H1W2—O2W—H2W2107.7
N1—C1—H1B109.2H1W3—O3W—H2W3107.5
N2—Ni1—N1—C5−166.65 (8)O1W—Ni1—N2—C4−106.83 (7)
N2i—Ni1—N1—C513.35 (8)O1Wi—Ni1—N2—C473.17 (7)
O1W—Ni1—N1—C5104.78 (8)C5—N1—C1—C2179.36 (10)
O1Wi—Ni1—N1—C5−75.22 (8)Ni1—N1—C1—C254.91 (12)
N2—Ni1—N1—C1−39.09 (9)N1—C1—C2—C3−69.36 (15)
N2i—Ni1—N1—C1140.91 (9)C4—N2—C3—C2−179.50 (10)
O1W—Ni1—N1—C1−127.66 (8)Ni1—N2—C3—C2−58.06 (12)
O1Wi—Ni1—N1—C152.34 (8)C1—C2—C3—N271.78 (14)
N1i—Ni1—N2—C3−139.74 (9)C3—N2—C4—C5i166.48 (10)
N1—Ni1—N2—C340.26 (9)Ni1—N2—C4—C5i40.06 (11)
O1W—Ni1—N2—C3128.21 (9)C1—N1—C5—C4i−168.52 (10)
O1Wi—Ni1—N2—C3−51.79 (9)Ni1—N1—C5—C4i−38.86 (11)
N1i—Ni1—N2—C4−14.78 (7)O1—C11—C12—C12ii11.2 (2)
N1—Ni1—N2—C4165.22 (7)O2—C11—C12—C12ii−168.24 (16)
D—H···AD—HH···AD···AD—H···A
O1W—H1W1···O3W0.852.172.8047 (14)131
O2W—H1W2···O2iii0.851.982.7026 (14)142
O2W—H2W2···O2ii0.851.912.7000 (15)154
O3W—H1W3···O1iv0.851.962.7633 (14)157
O3W—H2W3···O10.852.062.7968 (14)144
N1—H1N1···O2Wv0.88 (2)2.19 (2)3.0153 (15)154 (2)
N2—H1N2···O3Wv0.90 (2)2.25 (2)3.0769 (15)153 (2)
C3—H3B···O1i0.972.603.3850 (18)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1W—H1W1⋯O3W0.852.172.8047 (14)131
O2W—H1W2⋯O2i0.851.982.7026 (14)142
O2W—H2W2⋯O2ii0.851.912.7000 (15)154
O3W—H1W3⋯O1iii0.851.962.7633 (14)157
O3W—H2W3⋯O10.852.062.7968 (14)144
N1—H1N1⋯O2Wiv0.88 (2)2.19 (2)3.0153 (15)154 (2)
N2—H1N2⋯O3Wiv0.90 (2)2.25 (2)3.0769 (15)153 (2)
C3—H3B⋯O1v0.972.603.3850 (18)138

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) .

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