| Literature DB >> 21587659 |
Yan Qiao1, Xiuping Ju, Zhiqing Gao, Lingqian Kong.
Abstract
The title compound, C(9)H(12)N(4)O, crystallizes with two independent mol-ecules in the asymmetric unit. In the crystal, inter-molecular N-H⋯O and N-H⋯N hydrogen bonds link the mol-ecules into paired ribbons propagated in [100]. The crystal studied was a twin (twin law 00/00/001) with a minor component of 25%.Entities:
Year: 2010 PMID: 21587659 PMCID: PMC2983336 DOI: 10.1107/S1600536810038353
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C9H12N4O | |
| Monoclinic, | Mo |
| Cell parameters from 839 reflections | |
| θ = 2.5–26.2° | |
| µ = 0.09 mm−1 | |
| β = 90.796 (1)° | |
| Block, colourless | |
| 0.43 × 0.17 × 0.15 mm |
| Bruker SMART APEX CCD area-detector diffractometer | 3568 independent reflections |
| Radiation source: fine-focus sealed tube | 1412 reflections with |
| graphite | |
| phi and ω scans | θmax = 25.0°, θmin = 1.4° |
| Absorption correction: multi-scan ( | |
| 9568 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 3568 reflections | (Δ/σ)max < 0.001 |
| 256 parameters | Δρmax = 0.26 e Å−3 |
| 0 restraints | Δρmin = −0.24 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| O1 | 0.8472 (3) | 0.1813 (5) | 0.45497 (9) | 0.0877 (10) | |
| O2 | 0.3489 (2) | 0.2384 (4) | 0.50884 (9) | 0.0731 (9) | |
| N1 | 0.6814 (3) | 0.3386 (5) | 0.55616 (12) | 0.0627 (9) | |
| N2 | 0.7850 (3) | 0.3042 (5) | 0.52501 (12) | 0.0655 (10) | |
| H2 | 0.8681 | 0.3330 | 0.5320 | 0.079* | |
| N3 | 0.6226 (3) | 0.1926 (5) | 0.47282 (11) | 0.0746 (11) | |
| H3 | 0.5607 | 0.2305 | 0.4918 | 0.089* | |
| N4 | 0.5831 (3) | 0.0984 (6) | 0.43144 (11) | 0.0793 (11) | |
| H4A | 0.6347 | 0.1350 | 0.4075 | 0.119* | |
| H4C | 0.5948 | −0.0210 | 0.4360 | 0.119* | |
| N5 | 0.1757 (3) | 0.0963 (5) | 0.40633 (11) | 0.0578 (9) | |
| N6 | 0.2815 (3) | 0.1455 (5) | 0.43539 (11) | 0.0610 (9) | |
| H6A | 0.3642 | 0.1413 | 0.4254 | 0.073* | |
| N7 | 0.1225 (3) | 0.2228 (5) | 0.49114 (11) | 0.0762 (11) | |
| H7A | 0.0802 | 0.1160 | 0.4849 | 0.091* | |
| N8 | 0.0871 (3) | 0.2698 (6) | 0.53820 (12) | 0.0931 (13) | |
| H8A | 0.1197 | 0.1869 | 0.5584 | 0.140* | |
| H8C | 0.1239 | 0.3782 | 0.5448 | 0.140* | |
| C1 | 0.2557 (4) | 0.2014 (6) | 0.48027 (15) | 0.0612 (11) | |
| C2 | 0.2023 (4) | 0.0482 (5) | 0.36361 (14) | 0.0559 (10) | |
| C3 | 0.0833 (4) | −0.0052 (6) | 0.33345 (14) | 0.0583 (11) | |
| C4 | 0.0951 (5) | −0.0984 (6) | 0.29212 (15) | 0.0735 (12) | |
| H4 | 0.1824 | −0.1264 | 0.2817 | 0.088* | |
| C5 | −0.0154 (6) | −0.1537 (7) | 0.26486 (17) | 0.0882 (15) | |
| H5 | −0.0020 | −0.2153 | 0.2365 | 0.106* | |
| C6 | −0.1446 (6) | −0.1168 (8) | 0.27995 (18) | 0.0965 (17) | |
| H6 | −0.2203 | −0.1574 | 0.2626 | 0.116* | |
| C7 | −0.1616 (5) | −0.0192 (8) | 0.32097 (18) | 0.1011 (17) | |
| H7 | −0.2494 | 0.0110 | 0.3306 | 0.121* | |
| C8 | −0.0505 (5) | 0.0345 (7) | 0.34802 (15) | 0.0789 (14) | |
| H8 | −0.0639 | 0.0976 | 0.3761 | 0.095* | |
| C9 | 0.3434 (4) | 0.0465 (6) | 0.34318 (14) | 0.0776 (13) | |
| H9A | 0.3935 | 0.1513 | 0.3543 | 0.116* | |
| H9B | 0.3368 | 0.0498 | 0.3093 | 0.116* | |
| H9C | 0.3903 | −0.0629 | 0.3529 | 0.116* | |
| C10 | 0.7539 (4) | 0.2242 (6) | 0.48324 (16) | 0.0670 (12) | |
| C11 | 0.7111 (4) | 0.4054 (6) | 0.59662 (15) | 0.0609 (11) | |
| C12 | 0.5943 (5) | 0.4406 (6) | 0.62839 (16) | 0.0696 (12) | |
| C13 | 0.4626 (5) | 0.4533 (7) | 0.60913 (17) | 0.0916 (16) | |
| H13 | 0.4496 | 0.4393 | 0.5767 | 0.110* | |
| C14 | 0.3502 (6) | 0.4868 (8) | 0.6376 (2) | 0.119 (2) | |
| H14 | 0.2631 | 0.4944 | 0.6241 | 0.143* | |
| C15 | 0.3676 (7) | 0.5084 (9) | 0.6855 (2) | 0.126 (2) | |
| H15 | 0.2926 | 0.5326 | 0.7045 | 0.151* | |
| C16 | 0.4968 (8) | 0.4940 (8) | 0.7055 (2) | 0.116 (2) | |
| H16 | 0.5093 | 0.5049 | 0.7381 | 0.139* | |
| C17 | 0.6091 (6) | 0.4628 (6) | 0.67616 (17) | 0.0891 (15) | |
| H17 | 0.6963 | 0.4571 | 0.6897 | 0.107* | |
| C18 | 0.8554 (4) | 0.4505 (6) | 0.61330 (15) | 0.0754 (13) | |
| H18A | 0.9043 | 0.3393 | 0.6198 | 0.113* | |
| H18B | 0.8517 | 0.5230 | 0.6416 | 0.113* | |
| H18C | 0.9015 | 0.5178 | 0.5891 | 0.113* |
| O1 | 0.0453 (16) | 0.145 (3) | 0.073 (2) | 0.0036 (17) | 0.0070 (15) | −0.0160 (19) |
| O2 | 0.0450 (15) | 0.106 (2) | 0.0682 (19) | 0.0043 (15) | −0.0040 (14) | −0.0133 (17) |
| N1 | 0.062 (2) | 0.070 (3) | 0.057 (2) | 0.0059 (18) | 0.0080 (18) | −0.0016 (19) |
| N2 | 0.0499 (19) | 0.088 (3) | 0.058 (2) | −0.0044 (18) | 0.0016 (17) | −0.012 (2) |
| N3 | 0.044 (2) | 0.114 (3) | 0.066 (2) | 0.0049 (19) | 0.0020 (16) | −0.025 (2) |
| N4 | 0.055 (2) | 0.115 (3) | 0.068 (2) | 0.002 (2) | −0.0024 (17) | −0.015 (2) |
| N5 | 0.055 (2) | 0.062 (2) | 0.056 (2) | 0.0020 (17) | −0.0064 (17) | −0.0019 (18) |
| N6 | 0.0501 (19) | 0.080 (3) | 0.054 (2) | −0.0011 (17) | 0.0018 (16) | −0.0103 (19) |
| N7 | 0.054 (2) | 0.111 (3) | 0.064 (2) | −0.011 (2) | 0.0074 (17) | −0.020 (2) |
| N8 | 0.056 (2) | 0.152 (4) | 0.072 (3) | 0.002 (2) | 0.0065 (18) | −0.015 (3) |
| C1 | 0.041 (2) | 0.079 (3) | 0.064 (3) | −0.003 (2) | −0.003 (2) | −0.002 (2) |
| C2 | 0.061 (3) | 0.049 (3) | 0.057 (3) | 0.000 (2) | −0.004 (2) | 0.001 (2) |
| C3 | 0.071 (3) | 0.054 (3) | 0.050 (2) | 0.002 (2) | −0.003 (2) | 0.006 (2) |
| C4 | 0.087 (3) | 0.066 (3) | 0.068 (3) | 0.004 (3) | −0.005 (3) | −0.006 (3) |
| C5 | 0.116 (4) | 0.078 (4) | 0.069 (3) | −0.006 (3) | −0.016 (3) | −0.010 (3) |
| C6 | 0.105 (4) | 0.104 (5) | 0.079 (4) | −0.031 (4) | −0.027 (3) | 0.003 (3) |
| C7 | 0.078 (4) | 0.146 (5) | 0.079 (4) | −0.013 (3) | −0.011 (3) | −0.004 (4) |
| C8 | 0.071 (3) | 0.104 (4) | 0.062 (3) | −0.011 (3) | −0.009 (2) | −0.009 (3) |
| C9 | 0.074 (3) | 0.092 (4) | 0.067 (3) | −0.001 (3) | 0.011 (2) | −0.009 (3) |
| C10 | 0.050 (3) | 0.089 (3) | 0.062 (3) | 0.009 (2) | −0.001 (2) | −0.006 (3) |
| C11 | 0.071 (3) | 0.055 (3) | 0.057 (3) | 0.005 (2) | 0.000 (2) | −0.001 (2) |
| C12 | 0.079 (3) | 0.063 (3) | 0.067 (3) | 0.002 (2) | 0.006 (2) | −0.002 (2) |
| C13 | 0.086 (4) | 0.102 (4) | 0.088 (4) | 0.006 (3) | 0.029 (3) | −0.021 (3) |
| C14 | 0.098 (4) | 0.153 (6) | 0.106 (4) | 0.001 (4) | 0.031 (4) | −0.032 (4) |
| C15 | 0.114 (5) | 0.156 (6) | 0.109 (5) | −0.011 (4) | 0.052 (4) | −0.028 (4) |
| C16 | 0.153 (6) | 0.122 (5) | 0.074 (4) | −0.010 (5) | 0.034 (4) | −0.016 (3) |
| C17 | 0.119 (4) | 0.083 (4) | 0.067 (3) | 0.009 (3) | 0.012 (3) | −0.005 (3) |
| C18 | 0.078 (3) | 0.067 (3) | 0.080 (3) | 0.007 (2) | −0.009 (2) | −0.005 (2) |
| O1—C10 | 1.260 (4) | C5—C6 | 1.365 (6) |
| O2—C1 | 1.239 (4) | C5—H5 | 0.9300 |
| N1—C11 | 1.274 (4) | C6—C7 | 1.374 (7) |
| N1—N2 | 1.374 (4) | C6—H6 | 0.9300 |
| N2—C10 | 1.349 (5) | C7—C8 | 1.377 (6) |
| N2—H2 | 0.8600 | C7—H7 | 0.9300 |
| N3—C10 | 1.333 (5) | C8—H8 | 0.9300 |
| N3—N4 | 1.407 (4) | C9—H9A | 0.9600 |
| N3—H3 | 0.8600 | C9—H9B | 0.9600 |
| N4—H4A | 0.8900 | C9—H9C | 0.9600 |
| N4—H4C | 0.8900 | C11—C12 | 1.485 (5) |
| N5—C2 | 1.288 (4) | C11—C18 | 1.518 (5) |
| N5—N6 | 1.361 (4) | C12—C17 | 1.366 (5) |
| N6—C1 | 1.360 (5) | C12—C13 | 1.393 (6) |
| N6—H6A | 0.8600 | C13—C14 | 1.393 (6) |
| N7—C1 | 1.351 (4) | C13—H13 | 0.9300 |
| N7—N8 | 1.422 (4) | C14—C15 | 1.373 (7) |
| N7—H7A | 0.9000 | C14—H14 | 0.9300 |
| N8—H8A | 0.8900 | C15—C16 | 1.380 (8) |
| N8—H8C | 0.8900 | C15—H15 | 0.9300 |
| C2—C3 | 1.485 (5) | C16—C17 | 1.404 (7) |
| C2—C9 | 1.503 (5) | C16—H16 | 0.9300 |
| C3—C4 | 1.359 (5) | C17—H17 | 0.9300 |
| C3—C8 | 1.407 (5) | C18—H18A | 0.9600 |
| C4—C5 | 1.378 (6) | C18—H18B | 0.9600 |
| C4—H4 | 0.9300 | C18—H18C | 0.9600 |
| C11—N1—N2 | 119.1 (3) | C8—C7—H7 | 119.6 |
| C10—N2—N1 | 118.8 (3) | C7—C8—C3 | 120.5 (4) |
| C10—N2—H2 | 120.6 | C7—C8—H8 | 119.8 |
| N1—N2—H2 | 120.6 | C3—C8—H8 | 119.8 |
| C10—N3—N4 | 121.4 (3) | C2—C9—H9A | 109.5 |
| C10—N3—H3 | 119.3 | C2—C9—H9B | 109.5 |
| N4—N3—H3 | 119.3 | H9A—C9—H9B | 109.5 |
| N3—N4—H4A | 109.4 | C2—C9—H9C | 109.5 |
| N3—N4—H4C | 109.1 | H9A—C9—H9C | 109.5 |
| H4A—N4—H4C | 109.5 | H9B—C9—H9C | 109.5 |
| C2—N5—N6 | 118.5 (3) | O1—C10—N3 | 121.3 (4) |
| C1—N6—N5 | 119.6 (3) | O1—C10—N2 | 120.5 (4) |
| C1—N6—H6A | 120.2 | N3—C10—N2 | 118.2 (4) |
| N5—N6—H6A | 120.2 | N1—C11—C12 | 116.3 (4) |
| C1—N7—N8 | 119.3 (3) | N1—C11—C18 | 124.2 (4) |
| C1—N7—H7A | 107.2 | C12—C11—C18 | 119.6 (4) |
| N8—N7—H7A | 106.0 | C17—C12—C13 | 117.6 (4) |
| N7—N8—H8A | 110.3 | C17—C12—C11 | 123.1 (4) |
| N7—N8—H8C | 107.9 | C13—C12—C11 | 119.3 (4) |
| H8A—N8—H8C | 109.5 | C14—C13—C12 | 121.2 (5) |
| O2—C1—N7 | 121.9 (4) | C14—C13—H13 | 119.4 |
| O2—C1—N6 | 122.0 (3) | C12—C13—H13 | 119.4 |
| N7—C1—N6 | 116.0 (3) | C15—C14—C13 | 120.2 (6) |
| N5—C2—C3 | 116.4 (4) | C15—C14—H14 | 119.9 |
| N5—C2—C9 | 124.1 (3) | C13—C14—H14 | 119.9 |
| C3—C2—C9 | 119.5 (4) | C14—C15—C16 | 119.7 (5) |
| C4—C3—C8 | 116.5 (4) | C14—C15—H15 | 120.2 |
| C4—C3—C2 | 123.4 (4) | C16—C15—H15 | 120.2 |
| C8—C3—C2 | 120.1 (4) | C15—C16—C17 | 119.3 (5) |
| C3—C4—C5 | 123.6 (5) | C15—C16—H16 | 120.4 |
| C3—C4—H4 | 118.2 | C17—C16—H16 | 120.4 |
| C5—C4—H4 | 118.2 | C12—C17—C16 | 122.0 (5) |
| C6—C5—C4 | 119.2 (5) | C12—C17—H17 | 119.0 |
| C6—C5—H5 | 120.4 | C16—C17—H17 | 119.0 |
| C4—C5—H5 | 120.4 | C11—C18—H18A | 109.5 |
| C5—C6—C7 | 119.3 (5) | C11—C18—H18B | 109.5 |
| C5—C6—H6 | 120.3 | H18A—C18—H18B | 109.5 |
| C7—C6—H6 | 120.3 | C11—C18—H18C | 109.5 |
| C6—C7—C8 | 120.9 (5) | H18A—C18—H18C | 109.5 |
| C6—C7—H7 | 119.6 | H18B—C18—H18C | 109.5 |
| H··· | ||||
| N2—H2···N8i | 0.86 | 2.19 | 2.982 (4) | 152 |
| N4—H4C···O2ii | 0.89 | 2.29 | 3.055 (5) | 144 |
| N3—H3···O2 | 0.86 | 2.13 | 2.895 (4) | 148 |
| N6—H6A···N4 | 0.86 | 2.17 | 2.972 (4) | 156 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2⋯N8i | 0.86 | 2.19 | 2.982 (4) | 152 |
| N4—H4 | 0.89 | 2.29 | 3.055 (5) | 144 |
| N3—H3⋯O2 | 0.86 | 2.13 | 2.895 (4) | 148 |
| N6—H6 | 0.86 | 2.17 | 2.972 (4) | 156 |
Symmetry codes: (i) ; (ii) .