Literature DB >> 21587650

tert-Butyl 4-{[5-(4-chloro-phen-yl)-1-(4-fluoro-phen-yl)-1H-pyrazol-3-yl]carbon-yl}piperazine-1-carboxyl-ate.

R Venkat Ragavan, V Vijayakumar, S Sarveswari, Seik Weng Ng, Edward R T Tiekink.   

Abstract

In the title pyrazole derivative, C(25)H(26)ClFN(4)O(3), both benzene rings are twisted out of the plane through the pyrazole ring, with dihedral angles of 67.62 (10) and 27.63 (10)° for the fluoro- and chloro-substituted rings, respectively. The dihedral angle between the two benzene rings is 64.54 (9)°. The piperazine ring (with a chair conformation) is linked to the pyrazole ring via a carbonyl spacer and is orientated to lie to one side of the pyrazole plane. In addition to an intra-molecular C-H⋯N contact, there are inter-molecular C-H⋯O inter-actions, which generate a supra-molecular chain with an undulating topology along the c axis that is sustained by alternating centrosymmetric ten-membered {⋯HCNCO}(2) and {⋯HC3O}(2) synthons.

Entities:  

Year:  2010        PMID: 21587650      PMCID: PMC2983130          DOI: 10.1107/S1600536810038560

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the pharmacological potential of pyrazol derivatives, see: Ragavan et al. (2009 ▶). For the synthesis, see: Ragavan et al. (2010 ▶). For a related structure, see: Samshuddin et al. (2010 ▶).

Experimental

Crystal data

C25H26ClFN4O3 M = 484.95 Triclinic, a = 6.0568 (5) Å b = 12.0047 (10) Å c = 16.2615 (13) Å α = 88.852 (1)° β = 81.206 (1)° γ = 87.644 (1)° V = 1167.37 (17) Å3 Z = 2 Mo Kα radiation μ = 0.21 mm−1 T = 100 K 0.35 × 0.10 × 0.10 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: analytical (FACES; Bruker, 2009 ▶) T min = 0.931, T max = 0.980 11213 measured reflections 5318 independent reflections 4351 reflections with I > 2σ(I) R int = 0.030

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.145 S = 1.06 5318 reflections 310 parameters H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2009 ▶); cell refinement: SAINT (Bruker, 2009 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶) and DIAMOND (Brandenburg, 2006 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810038560/hb5646sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810038560/hb5646Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C25H26ClFN4O3Z = 2
Mr = 484.95F(000) = 508
Triclinic, P1Dx = 1.380 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 6.0568 (5) ÅCell parameters from 3796 reflections
b = 12.0047 (10) Åθ = 3.0–30.6°
c = 16.2615 (13) ŵ = 0.21 mm1
α = 88.852 (1)°T = 100 K
β = 81.206 (1)°Block, colourless
γ = 87.644 (1)°0.35 × 0.10 × 0.10 mm
V = 1167.37 (17) Å3
Bruker SMART APEX diffractometer5318 independent reflections
Radiation source: fine-focus sealed tube4351 reflections with I > 2σ(I)
graphiteRint = 0.030
ω scanθmax = 27.5°, θmin = 2.1°
Absorption correction: analytical (FACES; Bruker, 2009)h = −7→7
Tmin = 0.931, Tmax = 0.980k = −15→15
11213 measured reflectionsl = −21→21
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.145H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0829P)2 + 0.4102P] where P = (Fo2 + 2Fc2)/3
5318 reflections(Δ/σ)max = 0.001
310 parametersΔρmax = 0.37 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl1−0.54699 (8)0.35562 (4)0.36749 (3)0.02774 (15)
F1−0.3361 (2)0.60200 (11)0.83637 (8)0.0351 (3)
O10.6767 (2)−0.00368 (11)0.59753 (8)0.0216 (3)
O20.6127 (2)−0.13676 (12)1.00046 (8)0.0223 (3)
O30.9285 (2)−0.21367 (11)0.92542 (8)0.0186 (3)
N10.1504 (2)0.26137 (12)0.66173 (9)0.0155 (3)
N20.3142 (2)0.20929 (13)0.69823 (10)0.0167 (3)
N30.6639 (2)0.04516 (13)0.73200 (9)0.0150 (3)
N40.6836 (3)−0.11496 (14)0.86022 (10)0.0202 (3)
C10.0220 (3)0.35009 (14)0.70660 (10)0.0148 (3)
C20.1251 (3)0.44859 (15)0.71731 (11)0.0174 (4)
H20.27780.45720.69480.021*
C30.0030 (3)0.53487 (16)0.76141 (12)0.0225 (4)
H30.06990.60330.76920.027*
C4−0.2166 (3)0.51834 (17)0.79337 (12)0.0226 (4)
C5−0.3210 (3)0.42072 (17)0.78344 (12)0.0213 (4)
H5−0.47320.41220.80670.026*
C6−0.2004 (3)0.33534 (16)0.73909 (11)0.0183 (4)
H6−0.26900.26750.73100.022*
C7−0.0359 (3)0.25317 (15)0.53333 (11)0.0154 (4)
C8−0.1139 (3)0.36381 (15)0.52973 (11)0.0180 (4)
H8−0.06180.41780.56340.022*
C9−0.2670 (3)0.39586 (16)0.47737 (12)0.0199 (4)
H9−0.31810.47150.47470.024*
C10−0.3444 (3)0.31675 (16)0.42920 (11)0.0183 (4)
C11−0.2662 (3)0.20696 (16)0.43007 (12)0.0212 (4)
H11−0.31830.15350.39600.025*
C12−0.1106 (3)0.17607 (16)0.48145 (11)0.0188 (4)
H12−0.05360.10110.48140.023*
C130.1254 (3)0.21355 (14)0.58746 (11)0.0147 (3)
C140.2801 (3)0.12616 (15)0.57692 (11)0.0166 (4)
H140.30600.07570.53190.020*
C150.3920 (3)0.12677 (14)0.64627 (11)0.0150 (3)
C160.5851 (3)0.04965 (14)0.65783 (11)0.0149 (3)
C170.5275 (3)0.06276 (15)0.81360 (11)0.0168 (4)
H17A0.38560.10310.80660.020*
H17B0.60830.10870.84820.020*
C180.4778 (3)−0.04902 (16)0.85671 (12)0.0194 (4)
H18A0.3988−0.03650.91390.023*
H18B0.3788−0.09040.82610.023*
C190.8221 (3)−0.13264 (16)0.77930 (11)0.0190 (4)
H19A0.7429−0.17860.74410.023*
H19B0.9640−0.17260.78690.023*
C200.8709 (3)−0.02034 (16)0.73720 (11)0.0180 (4)
H20A0.96640.02140.76900.022*
H20B0.9537−0.03200.68050.022*
C210.7328 (3)−0.15410 (15)0.93439 (11)0.0165 (4)
C221.0055 (3)−0.26720 (16)0.99898 (11)0.0191 (4)
C231.2187 (3)−0.32815 (17)0.96125 (13)0.0250 (4)
H23A1.1842−0.38480.92310.038*
H23B1.2900−0.36421.00560.038*
H23C1.3205−0.27500.93060.038*
C240.8349 (3)−0.34893 (18)1.03985 (14)0.0285 (5)
H24A0.7967−0.39890.99770.043*
H24B0.6998−0.30761.06550.043*
H24C0.8984−0.39281.08260.043*
C251.0532 (3)−0.17857 (18)1.05902 (12)0.0236 (4)
H25A1.1630−0.12781.03010.035*
H25B1.1128−0.21461.10610.035*
H25C0.9145−0.13631.07950.035*
U11U22U33U12U13U23
Cl10.0254 (3)0.0297 (3)0.0319 (3)−0.0024 (2)−0.0172 (2)0.0069 (2)
F10.0380 (7)0.0319 (7)0.0337 (7)0.0169 (6)−0.0032 (6)−0.0137 (6)
O10.0250 (7)0.0246 (7)0.0150 (6)0.0078 (6)−0.0038 (5)−0.0048 (5)
O20.0206 (7)0.0289 (7)0.0157 (7)0.0027 (5)0.0011 (5)0.0025 (6)
O30.0179 (6)0.0224 (7)0.0154 (6)0.0036 (5)−0.0036 (5)0.0020 (5)
N10.0174 (7)0.0153 (7)0.0146 (7)0.0012 (6)−0.0054 (6)0.0004 (6)
N20.0159 (7)0.0155 (7)0.0192 (8)0.0029 (6)−0.0057 (6)0.0019 (6)
N30.0150 (7)0.0178 (7)0.0117 (7)0.0035 (6)−0.0017 (5)0.0005 (6)
N40.0211 (8)0.0230 (8)0.0148 (7)0.0073 (6)−0.0001 (6)0.0034 (6)
C10.0170 (8)0.0150 (8)0.0123 (8)0.0057 (6)−0.0037 (6)−0.0006 (6)
C20.0180 (8)0.0198 (9)0.0147 (8)−0.0006 (7)−0.0031 (7)0.0003 (7)
C30.0299 (10)0.0169 (9)0.0221 (9)0.0012 (8)−0.0090 (8)−0.0037 (7)
C40.0274 (10)0.0216 (10)0.0185 (9)0.0107 (8)−0.0049 (8)−0.0044 (7)
C50.0173 (9)0.0276 (10)0.0182 (9)0.0042 (7)−0.0018 (7)0.0011 (8)
C60.0197 (9)0.0179 (9)0.0178 (9)0.0005 (7)−0.0043 (7)0.0002 (7)
C70.0141 (8)0.0172 (9)0.0145 (8)0.0000 (6)−0.0015 (6)0.0024 (7)
C80.0202 (9)0.0176 (9)0.0166 (8)−0.0001 (7)−0.0040 (7)−0.0003 (7)
C90.0211 (9)0.0193 (9)0.0194 (9)0.0007 (7)−0.0043 (7)0.0024 (7)
C100.0150 (8)0.0245 (10)0.0157 (8)0.0009 (7)−0.0048 (7)0.0044 (7)
C110.0236 (9)0.0215 (10)0.0203 (9)−0.0035 (7)−0.0083 (7)−0.0007 (7)
C120.0226 (9)0.0185 (9)0.0153 (8)0.0005 (7)−0.0037 (7)0.0007 (7)
C130.0161 (8)0.0147 (8)0.0134 (8)−0.0002 (6)−0.0023 (6)−0.0005 (6)
C140.0185 (8)0.0160 (9)0.0155 (8)−0.0010 (7)−0.0033 (7)0.0002 (7)
C150.0160 (8)0.0127 (8)0.0162 (8)0.0017 (6)−0.0028 (7)0.0000 (7)
C160.0159 (8)0.0139 (8)0.0148 (8)−0.0005 (6)−0.0019 (6)0.0005 (7)
C170.0184 (8)0.0183 (9)0.0126 (8)0.0042 (7)−0.0004 (7)−0.0016 (7)
C180.0167 (8)0.0233 (10)0.0169 (9)0.0040 (7)−0.0008 (7)0.0039 (7)
C190.0210 (9)0.0204 (9)0.0141 (8)0.0087 (7)−0.0006 (7)−0.0021 (7)
C200.0142 (8)0.0243 (10)0.0152 (8)0.0043 (7)−0.0024 (7)0.0013 (7)
C210.0160 (8)0.0139 (8)0.0199 (9)0.0003 (6)−0.0039 (7)0.0001 (7)
C220.0194 (9)0.0220 (9)0.0167 (9)0.0008 (7)−0.0061 (7)0.0041 (7)
C230.0226 (10)0.0252 (10)0.0276 (10)0.0059 (8)−0.0070 (8)0.0011 (8)
C240.0262 (10)0.0279 (11)0.0319 (11)−0.0026 (8)−0.0070 (9)0.0127 (9)
C250.0196 (9)0.0335 (11)0.0175 (9)0.0018 (8)−0.0030 (7)−0.0020 (8)
Cl1—C101.7439 (18)C9—H90.9500
F1—C41.355 (2)C10—C111.383 (3)
O1—C161.228 (2)C11—C121.387 (2)
O2—C211.218 (2)C11—H110.9500
O3—C211.349 (2)C12—H120.9500
O3—C221.475 (2)C13—C141.373 (2)
N1—N21.357 (2)C14—C151.402 (2)
N1—C131.379 (2)C14—H140.9500
N1—C11.436 (2)C15—C161.494 (2)
N2—C151.338 (2)C17—C181.521 (3)
N3—C161.363 (2)C17—H17A0.9900
N3—C201.465 (2)C17—H17B0.9900
N3—C171.466 (2)C18—H18A0.9900
N4—C211.356 (2)C18—H18B0.9900
N4—C181.457 (2)C19—C201.519 (3)
N4—C191.463 (2)C19—H19A0.9900
C1—C61.387 (3)C19—H19B0.9900
C1—C21.386 (2)C20—H20A0.9900
C2—C31.392 (3)C20—H20B0.9900
C2—H20.9500C22—C231.509 (3)
C3—C41.373 (3)C22—C241.523 (3)
C3—H30.9500C22—C251.524 (3)
C4—C51.378 (3)C23—H23A0.9800
C5—C61.382 (3)C23—H23B0.9800
C5—H50.9500C23—H23C0.9800
C6—H60.9500C24—H24A0.9800
C7—C81.394 (3)C24—H24B0.9800
C7—C121.398 (2)C24—H24C0.9800
C7—C131.471 (2)C25—H25A0.9800
C8—C91.390 (2)C25—H25B0.9800
C8—H80.9500C25—H25C0.9800
C9—C101.384 (3)
C21—O3—C22119.64 (14)C14—C15—C16124.05 (16)
N2—N1—C13112.50 (14)O1—C16—N3121.74 (16)
N2—N1—C1117.44 (14)O1—C16—C15118.02 (15)
C13—N1—C1129.91 (14)N3—C16—C15120.11 (15)
C15—N2—N1104.23 (14)N3—C17—C18109.81 (14)
C16—N3—C20118.19 (14)N3—C17—H17A109.7
C16—N3—C17125.08 (14)C18—C17—H17A109.7
C20—N3—C17112.72 (14)N3—C17—H17B109.7
C21—N4—C18120.10 (15)C18—C17—H17B109.7
C21—N4—C19125.57 (15)H17A—C17—H17B108.2
C18—N4—C19114.33 (14)N4—C18—C17110.80 (15)
C6—C1—C2121.44 (16)N4—C18—H18A109.5
C6—C1—N1119.72 (16)C17—C18—H18A109.5
C2—C1—N1118.84 (16)N4—C18—H18B109.5
C1—C2—C3119.41 (17)C17—C18—H18B109.5
C1—C2—H2120.3H18A—C18—H18B108.1
C3—C2—H2120.3N4—C19—C20109.09 (15)
C4—C3—C2118.21 (18)N4—C19—H19A109.9
C4—C3—H3120.9C20—C19—H19A109.9
C2—C3—H3120.9N4—C19—H19B109.9
F1—C4—C3118.44 (18)C20—C19—H19B109.9
F1—C4—C5118.57 (18)H19A—C19—H19B108.3
C3—C4—C5122.99 (18)N3—C20—C19111.15 (14)
C4—C5—C6118.84 (18)N3—C20—H20A109.4
C4—C5—H5120.6C19—C20—H20A109.4
C6—C5—H5120.6N3—C20—H20B109.4
C5—C6—C1119.12 (17)C19—C20—H20B109.4
C5—C6—H6120.4H20A—C20—H20B108.0
C1—C6—H6120.4O2—C21—O3124.94 (16)
C8—C7—C12118.48 (16)O2—C21—N4123.32 (17)
C8—C7—C13123.44 (16)O3—C21—N4111.74 (15)
C12—C7—C13118.06 (16)O3—C22—C23102.28 (14)
C9—C8—C7120.63 (17)O3—C22—C24110.27 (15)
C9—C8—H8119.7C23—C22—C24110.76 (17)
C7—C8—H8119.7O3—C22—C25109.96 (15)
C10—C9—C8119.52 (17)C23—C22—C25110.84 (16)
C10—C9—H9120.2C24—C22—C25112.29 (17)
C8—C9—H9120.2C22—C23—H23A109.5
C11—C10—C9121.10 (16)C22—C23—H23B109.5
C11—C10—Cl1119.40 (14)H23A—C23—H23B109.5
C9—C10—Cl1119.49 (14)C22—C23—H23C109.5
C10—C11—C12118.99 (17)H23A—C23—H23C109.5
C10—C11—H11120.5H23B—C23—H23C109.5
C12—C11—H11120.5C22—C24—H24A109.5
C11—C12—C7121.22 (17)C22—C24—H24B109.5
C11—C12—H12119.4H24A—C24—H24B109.5
C7—C12—H12119.4C22—C24—H24C109.5
C14—C13—N1105.62 (15)H24A—C24—H24C109.5
C14—C13—C7129.58 (16)H24B—C24—H24C109.5
N1—C13—C7124.79 (16)C22—C25—H25A109.5
C13—C14—C15105.83 (16)C22—C25—H25B109.5
C13—C14—H14127.1H25A—C25—H25B109.5
C15—C14—H14127.1C22—C25—H25C109.5
N2—C15—C14111.80 (15)H25A—C25—H25C109.5
N2—C15—C16124.02 (15)H25B—C25—H25C109.5
C13—N1—N2—C15−0.52 (19)N1—C13—C14—C15−0.33 (19)
C1—N1—N2—C15175.46 (15)C7—C13—C14—C15179.05 (17)
N2—N1—C1—C6−110.40 (18)N1—N2—C15—C140.29 (19)
C13—N1—C1—C664.8 (2)N1—N2—C15—C16176.34 (16)
N2—N1—C1—C268.8 (2)C13—C14—C15—N20.0 (2)
C13—N1—C1—C2−116.1 (2)C13—C14—C15—C16−176.02 (16)
C6—C1—C2—C3−0.2 (3)C20—N3—C16—O13.6 (3)
N1—C1—C2—C3−179.36 (16)C17—N3—C16—O1−152.18 (17)
C1—C2—C3—C40.5 (3)C20—N3—C16—C15−172.10 (15)
C2—C3—C4—F1179.97 (16)C17—N3—C16—C1532.1 (2)
C2—C3—C4—C5−0.3 (3)N2—C15—C16—O1−162.19 (17)
F1—C4—C5—C6179.53 (16)C14—C15—C16—O113.4 (3)
C3—C4—C5—C6−0.3 (3)N2—C15—C16—N313.6 (3)
C4—C5—C6—C10.5 (3)C14—C15—C16—N3−170.78 (16)
C2—C1—C6—C5−0.3 (3)C16—N3—C17—C18101.11 (19)
N1—C1—C6—C5178.85 (15)C20—N3—C17—C18−55.79 (19)
C12—C7—C8—C91.7 (3)C21—N4—C18—C17124.53 (18)
C13—C7—C8—C9−179.81 (17)C19—N4—C18—C17−55.4 (2)
C7—C8—C9—C100.8 (3)N3—C17—C18—N453.54 (19)
C8—C9—C10—C11−2.3 (3)C21—N4—C19—C20−124.91 (19)
C8—C9—C10—Cl1176.78 (14)C18—N4—C19—C2055.0 (2)
C9—C10—C11—C121.2 (3)C16—N3—C20—C19−101.57 (18)
Cl1—C10—C11—C12−177.88 (14)C17—N3—C20—C1957.07 (19)
C10—C11—C12—C71.4 (3)N4—C19—C20—N3−54.33 (19)
C8—C7—C12—C11−2.9 (3)C22—O3—C21—O22.6 (3)
C13—C7—C12—C11178.60 (17)C22—O3—C21—N4−177.38 (15)
N2—N1—C13—C140.5 (2)C18—N4—C21—O2−0.3 (3)
C1—N1—C13—C14−174.80 (17)C19—N4—C21—O2179.57 (17)
N2—N1—C13—C7−178.88 (16)C18—N4—C21—O3179.63 (15)
C1—N1—C13—C75.8 (3)C19—N4—C21—O3−0.5 (3)
C8—C7—C13—C14−151.42 (19)C21—O3—C22—C23177.25 (15)
C12—C7—C13—C1427.0 (3)C21—O3—C22—C2459.4 (2)
C8—C7—C13—N127.9 (3)C21—O3—C22—C25−64.9 (2)
C12—C7—C13—N1−153.69 (17)
D—H···AD—HH···AD···AD—H···A
C17—H17a···N20.992.242.950 (2)128
C14—H14···O1i0.952.283.192 (2)161
C18—H18a···O2ii0.992.523.223 (2)128
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C17—H17a⋯N20.992.242.950 (2)128
C14—H14⋯O1i0.952.283.192 (2)161
C18—H18a⋯O2ii0.992.523.223 (2)128

Symmetry codes: (i) ; (ii) .

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  R Venkat Ragavan; V Vijayakumar; N Suchetha Kumari
Journal:  Eur J Med Chem       Date:  2009-12-28       Impact factor: 6.514

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Journal:  Eur J Med Chem       Date:  2009-04-14       Impact factor: 6.514

  4 in total

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