Literature DB >> 21587617

[2,2'-Imino-diethano-lato(2-)-κO,N,O'][4-(meth-oxy-carbonyl-meth-yl)phen-yl]boron.

Ahmed L Zein1, Louise N Dawe, Paris E Georghiou.   

Abstract

The title compound, C(13)H(18)BNO(4), was readily obtained from the reaction of methyl 4-boronobenzene acetate with ethano-lamine. A combination of inter-molecular N-H⋯O hydrogen bonds and C-H⋯π inter-actions leads to the pairwise association of mol-ecules.

Entities:  

Year:  2010        PMID: 21587617      PMCID: PMC2983237          DOI: 10.1107/S1600536810037864

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to the biological importance of boron, see: Warrington (1923 ▶); Jabbour et al. (2004 ▶). For the use of boron-containing reagents in synthetic chemistry, see: Miyaura & Suzuki (1995 ▶); Corey et al. (1987 ▶); Liu et al. (2007 ▶); Jung & Lazarova (1999 ▶); Chan et al. (1998 ▶); Evans et al. (1998 ▶); Lam et al. (1998 ▶). For related structures, see: Rettig & Trotter (1975 ▶); Wang & Georghiou (2002 ▶).

Experimental

Crystal data

C13H18BNO4 M = 263.10 Orthorhombic, a = 8.3776 (11) Å b = 8.9269 (11) Å c = 17.369 (2) Å V = 1299.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 153 K 0.30 × 0.09 × 0.06 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: numerical (NUMABS; Higashi, 1999 ▶) T min = 0.985, T max = 0.997 16363 measured reflections 1725 independent reflections 1707 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.112 S = 1.17 1725 reflections 173 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.22 e Å−3 Data collection: CrystalClear (Rigaku, 2002 ▶); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810037864/fj2337sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810037864/fj2337Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C13H18BNO4Dx = 1.345 Mg m3
Mr = 263.10Melting point = 452–453 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71075 Å
Hall symbol: P 2ac 2abCell parameters from 5108 reflections
a = 8.3776 (11) Åθ = 2.6–30.6°
b = 8.9269 (11) ŵ = 0.10 mm1
c = 17.369 (2) ÅT = 153 K
V = 1299.0 (3) Å3Platelet, colorless
Z = 40.30 × 0.09 × 0.06 mm
F(000) = 560
Rigaku Saturn diffractometer1725 independent reflections
Radiation source: fine-focus sealed tube1707 reflections with I > 2σ(I)
graphite - Rigaku SHINERint = 0.037
Detector resolution: 14.63 pixels mm-1θmax = 27.5°, θmin = 2.6°
ω scansh = −10→10
Absorption correction: numerical (NUMABS; Higashi, 1999)k = −11→11
Tmin = 0.985, Tmax = 0.997l = −22→22
16363 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.112H-atom parameters constrained
S = 1.17w = 1/[σ2(Fo2) + (0.0529P)2 + 0.4126P] where P = (Fo2 + 2Fc2)/3
1725 reflections(Δ/σ)max < 0.001
173 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.The crystal was a weak anomalous scatterer collected with Mo Kα radiation. Friedel mates were merged (MERG 4) and the absolute configuration was not determined.
xyzUiso*/Ueq
O11.00908 (19)0.47529 (18)0.35582 (9)0.0281 (4)
O20.85897 (19)0.47478 (17)0.23631 (9)0.0268 (4)
O30.5232 (2)−0.2735 (2)0.39057 (11)0.0422 (5)
O40.6510 (3)−0.2494 (3)0.50205 (13)0.0617 (7)
N11.0730 (2)0.2952 (2)0.25504 (10)0.0249 (4)
H11.05990.19190.25770.030*
C10.7998 (3)0.2734 (2)0.34181 (12)0.0243 (4)
C20.6576 (3)0.2247 (3)0.30806 (13)0.0253 (4)
H20.62850.26240.25890.030*
C30.5568 (3)0.1220 (3)0.34475 (13)0.0261 (5)
H30.46260.08880.31950.031*
C40.5932 (3)0.0679 (3)0.41775 (13)0.0263 (5)
C50.7326 (3)0.1174 (3)0.45272 (13)0.0296 (5)
H50.75890.08270.50280.035*
C60.8342 (3)0.2173 (3)0.41551 (13)0.0276 (5)
H60.92940.24820.44060.033*
C71.1685 (3)0.4963 (3)0.33084 (14)0.0302 (5)
H7A1.23820.52540.37440.036*
H7B1.17430.57470.29060.036*
C81.2172 (3)0.3441 (3)0.29856 (15)0.0313 (5)
H8A1.31080.35340.26410.038*
H8B1.24270.27290.34050.038*
C90.8982 (3)0.4085 (3)0.16438 (13)0.0283 (5)
H9A0.89390.48390.12260.034*
H9B0.82310.32630.15200.034*
C101.0671 (3)0.3484 (3)0.17388 (14)0.0297 (5)
H10A1.08750.26500.13760.036*
H10B1.14690.42830.16490.036*
C110.4878 (3)−0.0470 (3)0.45767 (13)0.0287 (5)
H11A0.4717−0.01730.51200.034*
H11B0.3821−0.04980.43230.034*
C120.5624 (3)−0.1999 (3)0.45463 (15)0.0330 (5)
C130.5926 (4)−0.4222 (3)0.3835 (2)0.0499 (8)
H13A0.7093−0.41430.38310.060*
H13B0.5563−0.46860.33540.060*
H13C0.5589−0.48400.42720.060*
B10.9234 (3)0.3847 (3)0.30025 (14)0.0236 (5)
U11U22U33U12U13U23
O10.0291 (8)0.0257 (8)0.0296 (8)−0.0045 (7)0.0027 (6)−0.0029 (7)
O20.0318 (8)0.0203 (7)0.0283 (8)0.0029 (7)0.0023 (7)0.0014 (6)
O30.0412 (10)0.0352 (10)0.0503 (10)0.0057 (9)−0.0049 (9)−0.0132 (9)
O40.0875 (17)0.0522 (12)0.0453 (11)0.0243 (14)−0.0164 (12)0.0011 (9)
N10.0271 (9)0.0181 (8)0.0295 (9)0.0004 (8)0.0027 (8)0.0024 (8)
C10.0254 (10)0.0195 (10)0.0279 (10)0.0014 (9)0.0055 (8)−0.0020 (9)
C20.0263 (10)0.0228 (10)0.0268 (10)0.0030 (9)0.0023 (9)0.0005 (9)
C30.0232 (10)0.0234 (10)0.0318 (11)0.0010 (9)0.0011 (9)−0.0018 (9)
C40.0289 (10)0.0213 (10)0.0286 (10)0.0009 (9)0.0075 (9)−0.0026 (9)
C50.0360 (12)0.0291 (11)0.0236 (10)−0.0050 (10)0.0014 (10)0.0013 (9)
C60.0282 (10)0.0270 (11)0.0276 (10)−0.0031 (10)0.0000 (9)−0.0030 (9)
C70.0285 (11)0.0286 (12)0.0334 (12)−0.0054 (10)−0.0020 (9)0.0032 (10)
C80.0262 (11)0.0284 (12)0.0393 (13)−0.0005 (10)−0.0021 (10)0.0054 (10)
C90.0349 (12)0.0233 (11)0.0266 (11)−0.0002 (10)−0.0020 (9)0.0003 (9)
C100.0347 (12)0.0259 (11)0.0285 (11)0.0016 (10)0.0062 (10)0.0010 (9)
C110.0308 (11)0.0261 (11)0.0291 (11)−0.0023 (9)0.0051 (9)−0.0008 (9)
C120.0345 (12)0.0316 (12)0.0330 (11)−0.0013 (11)0.0057 (10)0.0010 (10)
C130.0444 (15)0.0340 (14)0.071 (2)0.0026 (13)0.0060 (15)−0.0162 (15)
B10.0261 (12)0.0188 (11)0.0258 (11)0.0004 (10)0.0020 (10)−0.0009 (9)
O1—C71.417 (3)C5—C61.392 (3)
O1—B11.449 (3)C5—H50.9500
O2—C91.421 (3)C6—H60.9500
O2—B11.474 (3)C7—C81.525 (4)
O3—C121.333 (3)C7—H7A0.9900
O3—C131.455 (4)C7—H7B0.9900
O4—C121.193 (3)C8—H8A0.9900
N1—C101.488 (3)C8—H8B0.9900
N1—C81.491 (3)C9—C101.523 (3)
N1—B11.681 (3)C9—H9A0.9900
N1—H10.9300C9—H9B0.9900
C1—C21.397 (3)C10—H10A0.9900
C1—C61.405 (3)C10—H10B0.9900
C1—B11.607 (3)C11—C121.502 (3)
C2—C31.400 (3)C11—H11A0.9900
C2—H20.9500C11—H11B0.9900
C3—C41.391 (3)C13—H13A0.9800
C3—H30.9500C13—H13B0.9800
C4—C51.388 (3)C13—H13C0.9800
C4—C111.520 (3)
C7—O1—B1109.67 (18)N1—C8—H8B111.1
C9—O2—B1110.55 (17)C7—C8—H8B111.1
C12—O3—C13114.9 (2)H8A—C8—H8B109.1
C10—N1—C8114.44 (19)O2—C9—C10105.45 (19)
C10—N1—B1105.44 (17)O2—C9—H9A110.7
C8—N1—B1103.17 (17)C10—C9—H9A110.7
C10—N1—H1111.1O2—C9—H9B110.7
C8—N1—H1111.1C10—C9—H9B110.7
B1—N1—H1111.1H9A—C9—H9B108.8
C2—C1—C6116.5 (2)N1—C10—C9104.23 (19)
C2—C1—B1123.6 (2)N1—C10—H10A110.9
C6—C1—B1119.9 (2)C9—C10—H10A110.9
C1—C2—C3121.8 (2)N1—C10—H10B110.9
C1—C2—H2119.1C9—C10—H10B110.9
C3—C2—H2119.1H10A—C10—H10B108.9
C4—C3—C2120.7 (2)C12—C11—C4110.81 (19)
C4—C3—H3119.7C12—C11—H11A109.5
C2—C3—H3119.7C4—C11—H11A109.5
C5—C4—C3118.2 (2)C12—C11—H11B109.5
C5—C4—C11120.3 (2)C4—C11—H11B109.5
C3—C4—C11121.5 (2)H11A—C11—H11B108.1
C4—C5—C6121.0 (2)O4—C12—O3123.2 (3)
C4—C5—H5119.5O4—C12—C11124.8 (3)
C6—C5—H5119.5O3—C12—C11112.0 (2)
C5—C6—C1121.7 (2)O3—C13—H13A109.5
C5—C6—H6119.1O3—C13—H13B109.5
C1—C6—H6119.1H13A—C13—H13B109.5
O1—C7—C8104.28 (19)O3—C13—H13C109.5
O1—C7—H7A110.9H13A—C13—H13C109.5
C8—C7—H7A110.9H13B—C13—H13C109.5
O1—C7—H7B110.9O1—B1—O2112.28 (19)
C8—C7—H7B110.9O1—B1—C1111.41 (18)
H7A—C7—H7B108.9O2—B1—C1116.1 (2)
N1—C8—C7103.34 (19)O1—B1—N1101.97 (18)
N1—C8—H8A111.1O2—B1—N1100.39 (17)
C7—C8—H8A111.1C1—B1—N1113.35 (18)
Cg3 is the centroid of the C1–C6 ring.
D—H···AD—HH···AD···AD—H···A
N1—H1···O2i0.932.062.921 (2)154
C10—H10B···Cg3ii0.992.653.618 (2)166
Table 1

Hydrogen-bond geometry (Å, °)

Cg3 is the centroid of the C1–C6 ring.

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O2i0.932.062.921 (2)154
C10—H10BCg3ii0.992.653.618 (2)166

Symmetry codes: (i) ; (ii) .

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