Literature DB >> 21587587

2,3-Dihydro-1H-pyrrolizin-1-one.

Yousaf Ali, Yu Peng, Erbing Hua, Mohammad Aijaz Anwar, Mehboob Ali Kalhoro.   

Abstract

There are two nearly identical mol-ecules in the asymmetric unit of the title compound, C(7)H(7)NO. The mol-ecules are nearly planar (r.m.s. deviations of 0.025 and 0.017 Å) and oriented at a dihedral angle of 28.98 (3)°. The two mol-ecules are linked by a C-H⋯O hydrogen bond. In the crystal, weak inter-molecular C-H⋯O hydrogen bonds link the mol-ecules into zigzag chains along the c axis.

Entities:  

Year:  2010        PMID: 21587587      PMCID: PMC2983252          DOI: 10.1107/S1600536810034902

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For general background to 2,3-dihydro­pyrrolizine derivatives and their biological activity, see: Skvortsov & Astakhova (1992 ▶). For the preparation, see: Braunholtz et al. (1962 ▶); Clemo & Ramage (1931 ▶). For natural sources, see: Meinwald & Meinwald (1965 ▶).

Experimental

Crystal data

C7H7NO M = 121.14 Monoclinic, a = 11.301 (1) Å b = 7.1730 (7) Å c = 14.3760 (16) Å β = 90.989 (5)° V = 1165.2 (2) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 113 K 0.12 × 0.06 × 0.04 mm

Data collection

Rigaku Saturn724 CCD camera diffractometer Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2009 ▶) T min = 0.989, T max = 0.996 10183 measured reflections 2284 independent reflections 2003 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.057 wR(F 2) = 0.118 S = 1.16 2284 reflections 163 parameters H-atom parameters constrained Δρmax = 0.19 e Å−3 Δρmin = −0.30 e Å−3 Data collection: CrystalClear-SM Expert (Rigaku, 2009 ▶); cell refinement: CrystalClear-SM Expert; data reduction: CrystalClear-SM Expert; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810034902/bq2209sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810034902/bq2209Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C7H7NOF(000) = 512
Mr = 121.14Dx = 1.381 Mg m3
Monoclinic, P21/cMelting point: 327(1) K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71075 Å
a = 11.301 (1) ÅCell parameters from 3403 reflections
b = 7.1730 (7) Åθ = 1.8–28.1°
c = 14.3760 (16) ŵ = 0.09 mm1
β = 90.989 (5)°T = 113 K
V = 1165.2 (2) Å3Prism, colorless
Z = 80.12 × 0.06 × 0.04 mm
Rigaku Saturn724 CCD camera diffractometer2284 independent reflections
Radiation source: rotating anode2003 reflections with I > 2σ(I)
multilayerRint = 0.051
ω scansθmax = 26.0°, θmin = 1.8°
Absorption correction: multi-scan (CrystalClear-SM Expert; Rigaku, 2009)h = −13→13
Tmin = 0.989, Tmax = 0.996k = −8→8
10183 measured reflectionsl = −17→15
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.057Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.118H-atom parameters constrained
S = 1.16w = 1/[σ2(Fo2) + (0.043P)2 + 0.3505P] where P = (Fo2 + 2Fc2)/3
2284 reflections(Δ/σ)max < 0.001
163 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.30 e Å3
Experimental. Single crystals suitable for X-ray crystallography were grown by slow cooling of a hot saturated solution of Petroleum Ether.
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted RSHELXS-97 -factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.84120 (12)0.0832 (2)0.57308 (9)0.0293 (4)
O20.49964 (11)0.0828 (2)0.17318 (10)0.0329 (4)
N10.72173 (13)0.1521 (2)0.35032 (11)0.0181 (4)
N20.20229 (13)0.1557 (2)0.11650 (11)0.0190 (4)
C10.78107 (17)0.0987 (3)0.50200 (13)0.0214 (4)
C20.64640 (16)0.0776 (3)0.49734 (13)0.0229 (5)
H2A0.60860.16460.54130.027*
H2B0.6233−0.05130.51360.027*
C30.60795 (16)0.1231 (3)0.39650 (13)0.0222 (4)
H3A0.56340.01830.36800.027*
H3B0.55860.23710.39380.027*
C40.81910 (16)0.1386 (3)0.40853 (13)0.0186 (4)
C50.91883 (17)0.1737 (3)0.35603 (13)0.0226 (4)
H50.99880.17280.37750.027*
C60.87834 (16)0.2109 (3)0.26502 (13)0.0218 (4)
H60.92650.24050.21360.026*
C70.75535 (16)0.1968 (3)0.26317 (13)0.0209 (4)
H70.70460.21520.21060.025*
C80.39292 (16)0.1181 (3)0.16955 (14)0.0219 (4)
C90.32016 (16)0.1840 (3)0.25181 (13)0.0223 (4)
H9A0.34900.30650.27430.027*
H9B0.32600.09340.30360.027*
C100.19132 (16)0.1993 (3)0.21584 (13)0.0208 (4)
H10A0.13950.10840.24720.025*
H10B0.15960.32650.22500.025*
C110.31432 (15)0.1065 (3)0.09001 (13)0.0186 (4)
C120.30999 (17)0.0643 (3)−0.00456 (14)0.0223 (4)
H120.37410.0258−0.04190.027*
C130.19207 (17)0.0901 (3)−0.03344 (14)0.0239 (5)
H130.16150.0721−0.09480.029*
C140.12721 (17)0.1468 (3)0.04322 (14)0.0238 (5)
H140.04500.17410.04350.029*
U11U22U33U12U13U23
O10.0349 (8)0.0343 (9)0.0185 (8)0.0044 (6)−0.0039 (6)−0.0005 (6)
O20.0195 (7)0.0467 (10)0.0324 (9)0.0055 (6)−0.0011 (6)−0.0079 (7)
N10.0169 (7)0.0209 (8)0.0165 (8)0.0002 (6)0.0003 (6)−0.0004 (7)
N20.0187 (8)0.0195 (9)0.0188 (9)0.0013 (6)0.0020 (7)−0.0012 (7)
C10.0263 (10)0.0175 (10)0.0203 (11)0.0021 (8)−0.0006 (8)−0.0020 (8)
C20.0280 (10)0.0213 (10)0.0196 (10)−0.0017 (8)0.0044 (8)0.0000 (8)
C30.0179 (9)0.0247 (10)0.0241 (11)−0.0019 (8)0.0032 (8)0.0006 (8)
C40.0198 (9)0.0198 (10)0.0160 (10)0.0012 (7)−0.0031 (8)−0.0022 (8)
C50.0189 (9)0.0254 (10)0.0233 (11)−0.0002 (8)−0.0016 (8)−0.0033 (9)
C60.0224 (10)0.0237 (10)0.0193 (10)−0.0013 (8)0.0032 (8)−0.0003 (8)
C70.0238 (10)0.0227 (10)0.0161 (10)0.0015 (8)−0.0015 (8)0.0016 (8)
C80.0207 (9)0.0200 (10)0.0249 (11)−0.0004 (8)0.0007 (8)0.0004 (8)
C90.0230 (10)0.0251 (10)0.0187 (10)−0.0004 (8)0.0007 (8)−0.0008 (8)
C100.0222 (10)0.0228 (10)0.0177 (10)0.0015 (8)0.0043 (8)−0.0020 (8)
C110.0190 (9)0.0183 (10)0.0184 (10)0.0016 (7)0.0030 (8)0.0000 (8)
C120.0267 (10)0.0199 (10)0.0204 (10)0.0004 (8)0.0039 (8)−0.0003 (8)
C130.0307 (11)0.0233 (11)0.0176 (10)0.0011 (8)−0.0024 (8)0.0005 (8)
C140.0222 (10)0.0244 (11)0.0246 (11)0.0008 (8)−0.0044 (8)0.0001 (9)
O1—C11.222 (2)C5—H50.9500
O2—C81.232 (2)C6—C71.393 (2)
N1—C71.354 (2)C6—H60.9500
N1—C41.374 (2)C7—H70.9500
N1—C31.472 (2)C8—C111.438 (3)
N2—C141.343 (2)C8—C91.527 (3)
N2—C111.374 (2)C9—C101.541 (3)
N2—C101.469 (2)C9—H9A0.9900
C1—C41.446 (3)C9—H9B0.9900
C1—C21.530 (3)C10—H10A0.9900
C2—C31.541 (3)C10—H10B0.9900
C2—H2A0.9900C11—C121.393 (3)
C2—H2B0.9900C12—C131.401 (3)
C3—H3A0.9900C12—H120.9500
C3—H3B0.9900C13—C141.395 (3)
C4—C51.390 (3)C13—H130.9500
C5—C61.404 (3)C14—H140.9500
C7—N1—C4110.21 (16)N1—C7—C6107.17 (17)
C7—N1—C3135.39 (16)N1—C7—H7126.4
C4—N1—C3114.33 (15)C6—C7—H7126.4
C14—N2—C11110.07 (16)O2—C8—C11127.76 (18)
C14—N2—C10135.23 (16)O2—C8—C9124.78 (18)
C11—N2—C10114.68 (15)C11—C8—C9107.47 (15)
O1—C1—C4128.66 (18)C8—C9—C10106.29 (15)
O1—C1—C2124.46 (18)C8—C9—H9A110.5
C4—C1—C2106.88 (16)C10—C9—H9A110.5
C1—C2—C3106.52 (15)C8—C9—H9B110.5
C1—C2—H2A110.4C10—C9—H9B110.5
C3—C2—H2A110.4H9A—C9—H9B108.7
C1—C2—H2B110.4N2—C10—C9102.47 (14)
C3—C2—H2B110.4N2—C10—H10A111.3
H2A—C2—H2B108.6C9—C10—H10A111.3
N1—C3—C2102.70 (14)N2—C10—H10B111.3
N1—C3—H3A111.2C9—C10—H10B111.3
C2—C3—H3A111.2H10A—C10—H10B109.2
N1—C3—H3B111.2N2—C11—C12108.01 (16)
C2—C3—H3B111.2N2—C11—C8108.92 (16)
H3A—C3—H3B109.1C12—C11—C8143.08 (18)
N1—C4—C5107.75 (16)C11—C12—C13106.13 (17)
N1—C4—C1109.38 (16)C11—C12—H12126.9
C5—C4—C1142.83 (17)C13—C12—H12126.9
C4—C5—C6106.62 (16)C14—C13—C12108.33 (17)
C4—C5—H5126.7C14—C13—H13125.8
C6—C5—H5126.7C12—C13—H13125.8
C7—C6—C5108.24 (17)N2—C14—C13107.47 (17)
C7—C6—H6125.9N2—C14—H14126.3
C5—C6—H6125.9C13—C14—H14126.3
O1—C1—C2—C3175.74 (18)O2—C8—C9—C10−176.94 (19)
C4—C1—C2—C3−4.4 (2)C11—C8—C9—C103.2 (2)
C7—N1—C3—C2−179.46 (19)C14—N2—C10—C9−178.40 (19)
C4—N1—C3—C2−2.6 (2)C11—N2—C10—C93.8 (2)
C1—C2—C3—N14.14 (19)C8—C9—C10—N2−4.05 (19)
C7—N1—C4—C5−0.8 (2)C14—N2—C11—C120.0 (2)
C3—N1—C4—C5−178.45 (15)C10—N2—C11—C12178.29 (15)
C7—N1—C4—C1177.53 (15)C14—N2—C11—C8179.72 (15)
C3—N1—C4—C1−0.1 (2)C10—N2—C11—C8−2.0 (2)
O1—C1—C4—N1−177.28 (18)O2—C8—C11—N2179.24 (19)
C2—C1—C4—N12.8 (2)C9—C8—C11—N2−0.9 (2)
O1—C1—C4—C50.1 (4)O2—C8—C11—C12−1.2 (4)
C2—C1—C4—C5−179.7 (2)C9—C8—C11—C12178.7 (2)
N1—C4—C5—C60.7 (2)N2—C11—C12—C130.1 (2)
C1—C4—C5—C6−176.7 (2)C8—C11—C12—C13−179.6 (2)
C4—C5—C6—C7−0.4 (2)C11—C12—C13—C14−0.1 (2)
C4—N1—C7—C60.6 (2)C11—N2—C14—C130.0 (2)
C3—N1—C7—C6177.51 (19)C10—N2—C14—C13−177.84 (19)
C5—C6—C7—N1−0.1 (2)C12—C13—C14—N20.0 (2)
D—H···AD—HH···AD···AD—H···A
C6—H6···O1i0.952.553.151 (2)121
C7—H7···O20.952.553.250 (2)130
C12—H12···O2ii0.952.513.435 (2)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C6—H6⋯O1i0.952.553.151 (2)121
C7—H7⋯O20.952.553.250 (2)130
C12—H12⋯O2ii0.952.513.435 (2)165

Symmetry codes: (i) ; (ii) .

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Authors:  George M Sheldrick
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1.  {2-[(Benzo-yloxy)meth-yl]-1-oxo-3H-pyrrolizin-2-yl}methyl benzoate.

Authors:  Yousaf Ali; Sammer Yousuf; Nighat Afza; Yu Peng; Mahboob Ali Kalhoro
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-18
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