Literature DB >> 21587581

Methyl 7-oxo-12-propyl-amino-13-nitro-deisopropyl-dehydro-abietate.

Kai Wang, Ye Zhang, Xiang-Hui Yi, Yong Zhang, Ying-Ming Pan.   

Abstract

In the title compound, C(21)H(28)N(2)O(5) (systematic name: methyl 1,4a-dimethyl-7-nitro-9-oxo-6-propyl-amino-1,2,3,4,4a,9,10,10a-octa-hydro-phenanthrene-1-carboxyl-ate) the cyclo-hexane ring (A) and the central cyclo-hexene ring (B) exist at a trans ring junction, with the two methyl groups in the axial positions of the six-membered rings. Ring A has a chair conformation and ring B a half-chair conformation. An intra-molecular N-H⋯O hydrogen bond occurs. The crystal structure is stabilized by inter-molecular C-H⋯O and N-H⋯O inter-actions.

Entities:  

Year:  2010        PMID: 21587581      PMCID: PMC2983386          DOI: 10.1107/S1600536810032824

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For inhibition of viruses by resin acid derivatives, see: Fonseca et al. (2004 ▶); Gigante et al. (2003 ▶). For related structures, see: Hamodrakas et al. (1978 ▶); Silvestre et al. (1998 ▶).

Experimental

Crystal data

C21H28N2O5 M = 388.45 Orthorhombic, a = 8.2915 (15) Å b = 11.344 (2) Å c = 20.288 (4) Å V = 1908.3 (6) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 223 K 0.40 × 0.18 × 0.14 mm

Data collection

Rigaku Saturn diffractometer Absorption correction: multi-scan (Jacobson, 1998 ▶) T min = 0.956, T max = 0.987 9263 measured reflections 2492 independent reflections 2249 reflections with I > 2σ(I) R int = 0.047

Refinement

R[F 2 > 2σ(F 2)] = 0.061 wR(F 2) = 0.122 S = 1.19 2492 reflections 262 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.16 e Å−3 Δρmin = −0.20 e Å−3 Data collection: CrystalClear (Rigaku, 1999 ▶); cell refinement: CrystalClear; data reduction: CrystalStructure (Rigaku/MSC, 2000 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810032824/ng5010sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810032824/ng5010Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C21H28N2O5F(000) = 832
Mr = 388.45Dx = 1.352 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71075 Å
Hall symbol: P 2ac 2abCell parameters from 6184 reflections
a = 8.2915 (15) Åθ = 3.0–27.5°
b = 11.344 (2) ŵ = 0.10 mm1
c = 20.288 (4) ÅT = 223 K
V = 1908.3 (6) Å3Block, yellow
Z = 40.40 × 0.18 × 0.14 mm
Rigaku Saturn diffractometer2492 independent reflections
Radiation source: fine-focus sealed tube2249 reflections with I > 2σ(I)
graphiteRint = 0.047
Detector resolution: 14.63 pixels mm-1θmax = 27.5°, θmin = 3.0°
ω scansh = −10→10
Absorption correction: multi-scan (Jacobson, 1998)k = −13→14
Tmin = 0.956, Tmax = 0.987l = −26→18
9263 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.061Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.122H atoms treated by a mixture of independent and constrained refinement
S = 1.19w = 1/[σ2(Fo2) + (0.040P)2 + 0.3656P] where P = (Fo2 + 2Fc2)/3
2492 reflections(Δ/σ)max < 0.001
262 parametersΔρmax = 0.16 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O1−0.0800 (3)0.5805 (2)0.50671 (13)0.0413 (7)
O20.1082 (3)0.8201 (2)0.32927 (14)0.0428 (7)
O30.3574 (3)0.8723 (2)0.31899 (13)0.0374 (6)
O40.1294 (4)0.3814 (3)0.75394 (15)0.0594 (9)
O50.2387 (3)0.5514 (2)0.72342 (13)0.0393 (6)
N10.5809 (3)0.7320 (3)0.37018 (15)0.0301 (7)
H1A0.552 (4)0.784 (3)0.3368 (19)0.034 (10)*
N20.2510 (3)0.8110 (3)0.34543 (14)0.0296 (6)
C10.4799 (4)0.5968 (3)0.45202 (16)0.0273 (7)
H1B0.58470.56720.45830.033*
C20.4562 (4)0.6880 (3)0.40463 (16)0.0261 (7)
C30.2948 (4)0.7264 (3)0.39580 (16)0.0264 (7)
C40.1710 (4)0.6826 (3)0.43411 (16)0.0272 (7)
H40.06620.71260.42840.033*
C50.1976 (4)0.5958 (3)0.48066 (16)0.0259 (7)
C60.3556 (4)0.5500 (3)0.48907 (15)0.0249 (7)
C70.0594 (4)0.5512 (3)0.51883 (17)0.0306 (8)
C80.0933 (4)0.4657 (3)0.57383 (17)0.0291 (7)
H8A0.06260.38630.55950.035*
H8B0.02620.48630.61190.035*
C90.2698 (4)0.4647 (3)0.59499 (15)0.0255 (7)
H90.29300.54550.61060.031*
C100.2965 (4)0.3826 (3)0.65599 (17)0.0285 (7)
C110.4779 (4)0.3807 (3)0.67347 (18)0.0336 (8)
H11A0.50990.45850.68990.040*
H11B0.49620.32330.70880.040*
C120.5822 (5)0.3488 (4)0.61471 (19)0.0382 (9)
H12A0.55360.26970.59920.046*
H12B0.69580.34770.62810.046*
C130.5592 (4)0.4378 (3)0.55853 (18)0.0339 (8)
H13A0.62850.41540.52140.041*
H13B0.59330.51600.57370.041*
C140.3833 (4)0.4444 (3)0.53470 (16)0.0264 (7)
C150.7445 (4)0.6817 (3)0.36949 (17)0.0294 (7)
H15A0.77710.66390.41480.035*
H15B0.81970.74060.35200.035*
C160.7571 (4)0.5698 (3)0.32818 (18)0.0346 (8)
H16A0.73190.58810.28210.042*
H16B0.67810.51200.34390.042*
C170.9260 (4)0.5170 (3)0.33244 (19)0.0364 (9)
H17A1.00490.57620.32020.055*
H17B0.93400.45040.30260.055*
H17C0.94650.49090.37720.055*
C180.2105 (4)0.4364 (3)0.71584 (18)0.0326 (8)
C190.1741 (5)0.6042 (4)0.7827 (2)0.0500 (11)
H19A0.05740.59890.78210.075*
H19B0.20610.68640.78480.075*
H19C0.21560.56270.82100.075*
C200.2305 (5)0.2577 (3)0.6477 (2)0.0412 (9)
H20A0.24490.21430.68850.062*
H20B0.28820.21820.61250.062*
H20C0.11670.26130.63690.062*
C210.3452 (5)0.3342 (3)0.49327 (18)0.0376 (9)
H21A0.41100.33440.45380.056*
H21B0.23210.33470.48110.056*
H21C0.36840.26400.51890.056*
U11U22U33U12U13U23
O10.0236 (12)0.0637 (19)0.0365 (15)0.0019 (13)0.0007 (11)0.0130 (14)
O20.0259 (13)0.0531 (16)0.0492 (17)0.0044 (13)−0.0076 (13)0.0179 (14)
O30.0346 (13)0.0395 (14)0.0382 (15)−0.0046 (12)0.0018 (12)0.0126 (12)
O40.077 (2)0.0477 (17)0.053 (2)0.0017 (17)0.0362 (18)0.0111 (15)
O50.0461 (15)0.0413 (14)0.0305 (14)0.0002 (13)0.0097 (12)−0.0060 (12)
N10.0234 (14)0.0372 (17)0.0299 (16)−0.0009 (13)0.0009 (12)0.0100 (13)
N20.0298 (15)0.0315 (15)0.0275 (14)0.0017 (14)−0.0013 (13)0.0004 (13)
C10.0216 (14)0.0353 (19)0.0248 (17)0.0028 (14)0.0011 (13)0.0005 (15)
C20.0239 (16)0.0304 (18)0.0239 (17)−0.0055 (15)0.0017 (13)−0.0018 (15)
C30.0275 (16)0.0288 (17)0.0228 (16)0.0026 (15)−0.0052 (13)0.0015 (14)
C40.0210 (15)0.0338 (18)0.0268 (17)−0.0007 (15)0.0008 (13)−0.0020 (14)
C50.0214 (14)0.0314 (17)0.0250 (17)0.0004 (14)0.0019 (12)−0.0001 (14)
C60.0251 (15)0.0306 (17)0.0191 (15)−0.0040 (14)−0.0012 (13)−0.0021 (13)
C70.0255 (16)0.039 (2)0.0271 (18)−0.0021 (16)0.0007 (14)−0.0005 (16)
C80.0255 (16)0.0344 (19)0.0274 (18)−0.0031 (15)0.0029 (13)0.0044 (15)
C90.0261 (17)0.0260 (17)0.0245 (16)0.0017 (15)0.0013 (13)−0.0003 (13)
C100.0323 (17)0.0271 (17)0.0261 (17)0.0002 (15)0.0035 (14)0.0041 (14)
C110.0343 (18)0.039 (2)0.0271 (18)0.0047 (16)0.0000 (15)0.0068 (16)
C120.0332 (19)0.046 (2)0.036 (2)0.0116 (18)0.0032 (17)0.0074 (17)
C130.0305 (17)0.042 (2)0.0290 (19)0.0076 (17)0.0032 (14)0.0060 (16)
C140.0274 (16)0.0258 (17)0.0259 (17)0.0019 (15)0.0030 (13)−0.0010 (14)
C150.0202 (15)0.0356 (19)0.0326 (18)0.0007 (16)−0.0007 (14)0.0027 (15)
C160.0302 (17)0.040 (2)0.0332 (19)−0.0007 (17)0.0017 (15)−0.0035 (16)
C170.0303 (17)0.041 (2)0.038 (2)0.0018 (17)0.0047 (16)−0.0022 (17)
C180.0332 (18)0.0372 (19)0.0272 (18)0.0019 (16)0.0003 (14)0.0058 (16)
C190.061 (3)0.059 (3)0.030 (2)0.010 (2)0.007 (2)−0.013 (2)
C200.051 (2)0.0318 (19)0.041 (2)0.0020 (19)0.0046 (19)0.0052 (17)
C210.051 (2)0.035 (2)0.0275 (19)−0.0011 (18)0.0040 (17)−0.0043 (16)
O1—C71.227 (4)C10—C111.545 (5)
O2—N21.233 (3)C11—C121.517 (5)
O3—N21.245 (3)C11—H11A0.9800
O4—C181.200 (4)C11—H11B0.9800
O5—C181.334 (4)C12—C131.535 (5)
O5—C191.447 (4)C12—H12A0.9800
N1—C21.344 (4)C12—H12B0.9800
N1—C151.472 (4)C13—C141.539 (5)
N1—H1A0.93 (4)C13—H13A0.9800
N2—C31.448 (4)C13—H13B0.9800
C1—C61.382 (4)C14—C211.540 (5)
C1—C21.426 (5)C15—C161.525 (5)
C1—H1B0.9400C15—H15A0.9800
C2—C31.418 (4)C15—H15B0.9800
C3—C41.380 (5)C16—C171.525 (5)
C4—C51.383 (5)C16—H16A0.9800
C4—H40.9400C16—H16B0.9800
C5—C61.419 (4)C17—H17A0.9700
C5—C71.472 (4)C17—H17B0.9700
C6—C141.531 (5)C17—H17C0.9700
C7—C81.505 (5)C19—H19A0.9700
C8—C91.525 (4)C19—H19B0.9700
C8—H8A0.9800C19—H19C0.9700
C8—H8B0.9800C20—H20A0.9700
C9—C141.560 (4)C20—H20B0.9700
C9—C101.564 (5)C20—H20C0.9700
C9—H90.9900C21—H21A0.9700
C10—C201.529 (5)C21—H21B0.9700
C10—C181.535 (5)C21—H21C0.9700
C18—O5—C19115.8 (3)C11—C12—H12B109.5
C2—N1—C15124.8 (3)C13—C12—H12B109.5
C2—N1—H1A115 (2)H12A—C12—H12B108.1
C15—N1—H1A118 (2)C12—C13—C14112.5 (3)
O2—N2—O3121.3 (3)C12—C13—H13A109.1
O2—N2—C3119.0 (3)C14—C13—H13A109.1
O3—N2—C3119.7 (3)C12—C13—H13B109.1
C6—C1—C2122.8 (3)C14—C13—H13B109.1
C6—C1—H1B118.6H13A—C13—H13B107.8
C2—C1—H1B118.6C6—C14—C13111.8 (3)
N1—C2—C3123.1 (3)C6—C14—C21105.9 (3)
N1—C2—C1120.9 (3)C13—C14—C21109.0 (3)
C3—C2—C1116.0 (3)C6—C14—C9105.6 (3)
C4—C3—C2121.4 (3)C13—C14—C9109.4 (3)
C4—C3—N2116.7 (3)C21—C14—C9115.1 (3)
C2—C3—N2122.0 (3)N1—C15—C16113.0 (3)
C3—C4—C5121.5 (3)N1—C15—H15A109.0
C3—C4—H4119.3C16—C15—H15A109.0
C5—C4—H4119.3N1—C15—H15B109.0
C4—C5—C6119.3 (3)C16—C15—H15B109.0
C4—C5—C7118.7 (3)H15A—C15—H15B107.8
C6—C5—C7122.0 (3)C15—C16—C17111.0 (3)
C1—C6—C5118.9 (3)C15—C16—H16A109.4
C1—C6—C14121.1 (3)C17—C16—H16A109.4
C5—C6—C14119.8 (3)C15—C16—H16B109.4
O1—C7—C5122.3 (3)C17—C16—H16B109.4
O1—C7—C8119.9 (3)H16A—C16—H16B108.0
C5—C7—C8117.8 (3)C16—C17—H17A109.5
C7—C8—C9113.1 (3)C16—C17—H17B109.5
C7—C8—H8A109.0H17A—C17—H17B109.5
C9—C8—H8A109.0C16—C17—H17C109.5
C7—C8—H8B109.0H17A—C17—H17C109.5
C9—C8—H8B109.0H17B—C17—H17C109.5
H8A—C8—H8B107.8O4—C18—O5122.2 (4)
C8—C9—C14111.1 (3)O4—C18—C10124.3 (3)
C8—C9—C10111.3 (3)O5—C18—C10113.5 (3)
C14—C9—C10116.6 (3)O5—C19—H19A109.5
C8—C9—H9105.7O5—C19—H19B109.5
C14—C9—H9105.7H19A—C19—H19B109.5
C10—C9—H9105.7O5—C19—H19C109.5
C20—C10—C18106.8 (3)H19A—C19—H19C109.5
C20—C10—C11111.1 (3)H19B—C19—H19C109.5
C18—C10—C11106.1 (3)C10—C20—H20A109.5
C20—C10—C9114.5 (3)C10—C20—H20B109.5
C18—C10—C9108.9 (3)H20A—C20—H20B109.5
C11—C10—C9109.2 (3)C10—C20—H20C109.5
C12—C11—C10112.2 (3)H20A—C20—H20C109.5
C12—C11—H11A109.2H20B—C20—H20C109.5
C10—C11—H11A109.2C14—C21—H21A109.5
C12—C11—H11B109.2C14—C21—H21B109.5
C10—C11—H11B109.2H21A—C21—H21B109.5
H11A—C11—H11B107.9C14—C21—H21C109.5
C11—C12—C13110.8 (3)H21A—C21—H21C109.5
C11—C12—H12A109.5H21B—C21—H21C109.5
C13—C12—H12A109.5
C15—N1—C2—C3−169.2 (3)C14—C9—C10—C18164.2 (3)
C15—N1—C2—C19.6 (5)C8—C9—C10—C11177.6 (3)
C6—C1—C2—N1179.2 (3)C14—C9—C10—C1148.8 (4)
C6—C1—C2—C3−2.0 (5)C20—C10—C11—C1273.9 (4)
N1—C2—C3—C4−177.2 (3)C18—C10—C11—C12−170.4 (3)
C1—C2—C3—C44.0 (5)C9—C10—C11—C12−53.2 (4)
N1—C2—C3—N24.2 (5)C10—C11—C12—C1359.8 (4)
C1—C2—C3—N2−174.6 (3)C11—C12—C13—C14−59.2 (4)
O2—N2—C3—C4−15.9 (5)C1—C6—C14—C1326.8 (4)
O3—N2—C3—C4164.6 (3)C5—C6—C14—C13−157.9 (3)
O2—N2—C3—C2162.7 (3)C1—C6—C14—C21−91.8 (4)
O3—N2—C3—C2−16.7 (5)C5—C6—C14—C2183.5 (4)
C2—C3—C4—C5−3.0 (5)C1—C6—C14—C9145.7 (3)
N2—C3—C4—C5175.7 (3)C5—C6—C14—C9−39.0 (4)
C3—C4—C5—C6−0.3 (5)C12—C13—C14—C6168.4 (3)
C3—C4—C5—C7−178.7 (3)C12—C13—C14—C21−74.8 (4)
C2—C1—C6—C5−1.1 (5)C12—C13—C14—C951.8 (4)
C2—C1—C6—C14174.2 (3)C8—C9—C14—C662.4 (3)
C4—C5—C6—C12.3 (5)C10—C9—C14—C6−168.7 (3)
C7—C5—C6—C1−179.4 (3)C8—C9—C14—C13−177.2 (3)
C4—C5—C6—C14−173.1 (3)C10—C9—C14—C13−48.3 (4)
C7—C5—C6—C145.2 (5)C8—C9—C14—C21−54.0 (4)
C4—C5—C7—O16.8 (5)C10—C9—C14—C2174.9 (4)
C6—C5—C7—O1−171.5 (3)C2—N1—C15—C1675.2 (4)
C4—C5—C7—C8−174.0 (3)N1—C15—C16—C17−176.5 (3)
C6—C5—C7—C87.7 (5)C19—O5—C18—O43.8 (5)
O1—C7—C8—C9−164.0 (3)C19—O5—C18—C10−173.9 (3)
C5—C7—C8—C916.8 (4)C20—C10—C18—O411.4 (5)
C7—C8—C9—C14−53.1 (4)C11—C10—C18—O4−107.1 (4)
C7—C8—C9—C10175.2 (3)C9—C10—C18—O4135.5 (4)
C8—C9—C10—C2052.4 (4)C20—C10—C18—O5−170.8 (3)
C14—C9—C10—C20−76.4 (4)C11—C10—C18—O570.6 (4)
C8—C9—C10—C18−67.0 (3)C9—C10—C18—O5−46.8 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O30.93 (4)1.94 (4)2.654 (4)133 (3)
C8—H8B···O3i0.982.553.454 (4)154
C15—H15A···O1ii0.982.403.344 (4)161
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O30.93 (4)1.94 (4)2.654 (4)133 (3)
C8—H8B⋯O3i0.982.553.454 (4)154
C15—H15A⋯O1ii0.982.403.344 (4)161

Symmetry codes: (i) ; (ii) .

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Journal:  Bioorg Med Chem       Date:  2003-04-17       Impact factor: 3.641

  3 in total

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