| Literature DB >> 21587576 |
Peng Wang1, Rong Wan, Peng Yu, Qiu He, Jian-Qiang Zhang.
Abstract
The title compound, C(5)H(6)ClN(3), was synthesized by the reaction of 2,3-dichloro-pyridine and hydrazine hydrate. An intra-molecular N-H⋯Cl hydrogen bond results in the formation of a planar (mean deviation 0.038 Å) five-membered ring. In the crystal, inter-molecular N-H⋯N hydrogen bonds link the mol-ecules into a three-dimensional network.Entities:
Year: 2010 PMID: 21587576 PMCID: PMC2983279 DOI: 10.1107/S1600536810036950
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C5H6ClN3 | |
| Monoclinic, | Melting point = 427–429 K |
| Hall symbol: -P 2ybc | Mo |
| Cell parameters from 25 reflections | |
| θ = 9–13° | |
| µ = 0.52 mm−1 | |
| β = 103.46 (3)° | |
| Block, yellow | |
| 0.30 × 0.20 × 0.10 mm |
| Enraf–Nonius CAD-4 diffractometer | 936 reflections with |
| Radiation source: fine-focus sealed tube | |
| graphite | θmax = 25.3°, θmin = 1.8° |
| ω/2θ scans | |
| Absorption correction: ψ scan (North | |
| 2173 measured reflections | 3 standard reflections every 200 reflections |
| 1124 independent reflections | intensity decay: 1% |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H atoms treated by a mixture of independent and constrained refinement | |
| (Δ/σ)max = 0.001 | |
| 1124 reflections | Δρmax = 0.17 e Å−3 |
| 91 parameters | Δρmin = −0.15 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.166 (16) |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Cl | 0.18715 (4) | 0.20164 (13) | 0.95683 (4) | 0.0436 (2) | |
| N1 | 0.33408 (13) | 0.6634 (4) | 1.20853 (11) | 0.0332 (4) | |
| N2 | 0.41097 (14) | 0.4864 (5) | 1.07771 (12) | 0.0394 (4) | |
| H2A | 0.4020 (19) | 0.408 (6) | 1.0174 (17) | 0.059* | |
| N3 | 0.51985 (14) | 0.6524 (5) | 1.11726 (13) | 0.0388 (4) | |
| H3B | 0.509 (2) | 0.874 (7) | 1.1298 (17) | 0.058* | |
| H3A | 0.554 (2) | 0.586 (6) | 1.1821 (16) | 0.058* | |
| C1 | 0.11354 (17) | 0.4002 (5) | 1.11712 (14) | 0.0374 (5) | |
| H1 | 0.0399 | 0.3118 | 1.0866 | 0.045* | |
| C2 | 0.13219 (17) | 0.5562 (5) | 1.21092 (14) | 0.0408 (5) | |
| H2 | 0.0716 | 0.5732 | 1.2439 | 0.049* | |
| C3 | 0.24223 (18) | 0.6808 (5) | 1.25120 (15) | 0.0377 (5) | |
| H3 | 0.2545 | 0.7854 | 1.3127 | 0.045* | |
| C4 | 0.31800 (15) | 0.5159 (4) | 1.12028 (13) | 0.0286 (4) | |
| C5 | 0.20482 (16) | 0.3823 (5) | 1.07282 (13) | 0.0307 (4) |
| Cl | 0.0486 (3) | 0.0455 (3) | 0.0348 (3) | −0.0082 (2) | 0.0057 (2) | −0.0066 (2) |
| N1 | 0.0373 (9) | 0.0332 (9) | 0.0296 (8) | 0.0007 (7) | 0.0089 (7) | −0.0007 (7) |
| N2 | 0.0337 (9) | 0.0518 (11) | 0.0339 (9) | −0.0069 (8) | 0.0103 (7) | −0.0107 (8) |
| N3 | 0.0334 (9) | 0.0437 (10) | 0.0392 (9) | −0.0045 (8) | 0.0083 (7) | −0.0041 (8) |
| C1 | 0.0358 (10) | 0.0331 (11) | 0.0436 (11) | −0.0017 (8) | 0.0095 (9) | 0.0098 (9) |
| C2 | 0.0415 (11) | 0.0414 (12) | 0.0445 (12) | 0.0053 (9) | 0.0202 (9) | 0.0071 (10) |
| C3 | 0.0481 (12) | 0.0333 (10) | 0.0348 (10) | 0.0054 (9) | 0.0158 (9) | 0.0014 (8) |
| C4 | 0.0323 (10) | 0.0231 (9) | 0.0304 (9) | 0.0017 (7) | 0.0072 (7) | 0.0026 (7) |
| C5 | 0.0365 (10) | 0.0251 (9) | 0.0292 (9) | 0.0009 (8) | 0.0048 (8) | 0.0031 (7) |
| Cl—C5 | 1.7327 (18) | C1—C5 | 1.349 (3) |
| N1—C4 | 1.332 (2) | C1—C2 | 1.413 (3) |
| N1—C3 | 1.341 (2) | C1—H1 | 0.9300 |
| N2—C4 | 1.355 (2) | C2—C3 | 1.363 (3) |
| N2—N3 | 1.416 (2) | C2—H2 | 0.9300 |
| N2—H2A | 0.88 (2) | C3—H3 | 0.9300 |
| N3—H3B | 0.90 (3) | C4—C5 | 1.428 (2) |
| N3—H3A | 0.94 (2) | ||
| C4—N1—C3 | 118.50 (17) | C3—C2—H2 | 121.2 |
| C4—N2—N3 | 121.60 (16) | C1—C2—H2 | 121.2 |
| C4—N2—H2A | 121.3 (15) | N1—C3—C2 | 124.65 (19) |
| N3—N2—H2A | 115.4 (15) | N1—C3—H3 | 117.7 |
| N2—N3—H3B | 111.6 (15) | C2—C3—H3 | 117.7 |
| N2—N3—H3A | 112.9 (14) | N1—C4—N2 | 119.14 (16) |
| H3B—N3—H3A | 97.2 (19) | N1—C4—C5 | 120.15 (16) |
| C5—C1—C2 | 118.59 (18) | N2—C4—C5 | 120.69 (16) |
| C5—C1—H1 | 120.7 | C1—C5—C4 | 120.56 (17) |
| C2—C1—H1 | 120.7 | C1—C5—Cl | 120.90 (15) |
| C3—C2—C1 | 117.55 (18) | C4—C5—Cl | 118.54 (14) |
| C5—C1—C2—C3 | 0.1 (3) | C2—C1—C5—C4 | 0.5 (3) |
| C4—N1—C3—C2 | 0.3 (3) | C2—C1—C5—Cl | −178.77 (13) |
| C1—C2—C3—N1 | −0.6 (3) | N1—C4—C5—C1 | −0.8 (3) |
| C3—N1—C4—N2 | −177.86 (17) | N2—C4—C5—C1 | 177.42 (18) |
| C3—N1—C4—C5 | 0.3 (3) | N1—C4—C5—Cl | 178.52 (13) |
| N3—N2—C4—N1 | −9.6 (3) | N2—C4—C5—Cl | −3.3 (2) |
| N3—N2—C4—C5 | 172.20 (17) |
| H··· | ||||
| N2—H2A···Cl | 0.88 (2) | 2.58 (2) | 2.970 (2) | 108 (2) |
| N2—H2A···N3i | 0.88 (2) | 2.28 (2) | 3.058 (3) | 148 (2) |
| N3—H3A···N1ii | 0.94 (2) | 2.41 (2) | 3.243 (3) | 148 (2) |
| N3—H3B···N2iii | 0.90 (2) | 2.68 (2) | 3.492 (3) | 151 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N2—H2 | 0.88 (2) | 2.58 (2) | 2.970 (2) | 108 (2) |
| N2—H2 | 0.88 (2) | 2.28 (2) | 3.058 (3) | 148 (2) |
| N3—H3 | 0.94 (2) | 2.41 (2) | 3.243 (3) | 148 (2) |
| N3—H3 | 0.90 (2) | 2.68 (2) | 3.492 (3) | 151 (2) |
Symmetry codes: (i) ; (ii) ; (iii) .