Literature DB >> 21587576

1-(3-Chloro-pyridin-2-yl)hydrazine.

Peng Wang1, Rong Wan, Peng Yu, Qiu He, Jian-Qiang Zhang.   

Abstract

The title compound, C(5)H(6)ClN(3), was synthesized by the reaction of 2,3-dichloro-pyridine and hydrazine hydrate. An intra-molecular N-H⋯Cl hydrogen bond results in the formation of a planar (mean deviation 0.038 Å) five-membered ring. In the crystal, inter-molecular N-H⋯N hydrogen bonds link the mol-ecules into a three-dimensional network.

Entities:  

Year:  2010        PMID: 21587576      PMCID: PMC2983279          DOI: 10.1107/S1600536810036950

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is an inter­mediate in the synthesis of Rynaxypyr, a new insecticidal anthranilic diamide. For the synthesis and biological properties of Rynaxypyr, see: Lahm et al. (2007 ▶). For standard bond lengths, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C5H6ClN3 M = 143.58 Monoclinic, a = 11.637 (2) Å b = 3.9060 (8) Å c = 13.946 (3) Å β = 103.46 (3)° V = 616.5 (2) Å3 Z = 4 Mo Kα radiation μ = 0.52 mm−1 T = 293 K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.860, T max = 0.950 2173 measured reflections 1124 independent reflections 936 reflections with I > 2σ(I) R int = 0.036 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.032 wR(F 2) = 0.082 S = 1.04 1124 reflections 91 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.15 e Å−3 Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994 ▶); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536810036950/im2217sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810036950/im2217Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C5H6ClN3F(000) = 296
Mr = 143.58Dx = 1.547 Mg m3
Monoclinic, P21/cMelting point = 427–429 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 11.637 (2) ÅCell parameters from 25 reflections
b = 3.9060 (8) Åθ = 9–13°
c = 13.946 (3) ŵ = 0.52 mm1
β = 103.46 (3)°T = 293 K
V = 616.5 (2) Å3Block, yellow
Z = 40.30 × 0.20 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer936 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.036
graphiteθmax = 25.3°, θmin = 1.8°
ω/2θ scansh = 0→13
Absorption correction: ψ scan (North et al., 1968)k = −4→4
Tmin = 0.860, Tmax = 0.950l = −16→16
2173 measured reflections3 standard reflections every 200 reflections
1124 independent reflections intensity decay: 1%
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.032H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.082w = 1/[σ2(Fo2) + (0.0422P)2] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max = 0.001
1124 reflectionsΔρmax = 0.17 e Å3
91 parametersΔρmin = −0.15 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008)
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.166 (16)
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Cl0.18715 (4)0.20164 (13)0.95683 (4)0.0436 (2)
N10.33408 (13)0.6634 (4)1.20853 (11)0.0332 (4)
N20.41097 (14)0.4864 (5)1.07771 (12)0.0394 (4)
H2A0.4020 (19)0.408 (6)1.0174 (17)0.059*
N30.51985 (14)0.6524 (5)1.11726 (13)0.0388 (4)
H3B0.509 (2)0.874 (7)1.1298 (17)0.058*
H3A0.554 (2)0.586 (6)1.1821 (16)0.058*
C10.11354 (17)0.4002 (5)1.11712 (14)0.0374 (5)
H10.03990.31181.08660.045*
C20.13219 (17)0.5562 (5)1.21092 (14)0.0408 (5)
H20.07160.57321.24390.049*
C30.24223 (18)0.6808 (5)1.25120 (15)0.0377 (5)
H30.25450.78541.31270.045*
C40.31800 (15)0.5159 (4)1.12028 (13)0.0286 (4)
C50.20482 (16)0.3823 (5)1.07282 (13)0.0307 (4)
U11U22U33U12U13U23
Cl0.0486 (3)0.0455 (3)0.0348 (3)−0.0082 (2)0.0057 (2)−0.0066 (2)
N10.0373 (9)0.0332 (9)0.0296 (8)0.0007 (7)0.0089 (7)−0.0007 (7)
N20.0337 (9)0.0518 (11)0.0339 (9)−0.0069 (8)0.0103 (7)−0.0107 (8)
N30.0334 (9)0.0437 (10)0.0392 (9)−0.0045 (8)0.0083 (7)−0.0041 (8)
C10.0358 (10)0.0331 (11)0.0436 (11)−0.0017 (8)0.0095 (9)0.0098 (9)
C20.0415 (11)0.0414 (12)0.0445 (12)0.0053 (9)0.0202 (9)0.0071 (10)
C30.0481 (12)0.0333 (10)0.0348 (10)0.0054 (9)0.0158 (9)0.0014 (8)
C40.0323 (10)0.0231 (9)0.0304 (9)0.0017 (7)0.0072 (7)0.0026 (7)
C50.0365 (10)0.0251 (9)0.0292 (9)0.0009 (8)0.0048 (8)0.0031 (7)
Cl—C51.7327 (18)C1—C51.349 (3)
N1—C41.332 (2)C1—C21.413 (3)
N1—C31.341 (2)C1—H10.9300
N2—C41.355 (2)C2—C31.363 (3)
N2—N31.416 (2)C2—H20.9300
N2—H2A0.88 (2)C3—H30.9300
N3—H3B0.90 (3)C4—C51.428 (2)
N3—H3A0.94 (2)
C4—N1—C3118.50 (17)C3—C2—H2121.2
C4—N2—N3121.60 (16)C1—C2—H2121.2
C4—N2—H2A121.3 (15)N1—C3—C2124.65 (19)
N3—N2—H2A115.4 (15)N1—C3—H3117.7
N2—N3—H3B111.6 (15)C2—C3—H3117.7
N2—N3—H3A112.9 (14)N1—C4—N2119.14 (16)
H3B—N3—H3A97.2 (19)N1—C4—C5120.15 (16)
C5—C1—C2118.59 (18)N2—C4—C5120.69 (16)
C5—C1—H1120.7C1—C5—C4120.56 (17)
C2—C1—H1120.7C1—C5—Cl120.90 (15)
C3—C2—C1117.55 (18)C4—C5—Cl118.54 (14)
C5—C1—C2—C30.1 (3)C2—C1—C5—C40.5 (3)
C4—N1—C3—C20.3 (3)C2—C1—C5—Cl−178.77 (13)
C1—C2—C3—N1−0.6 (3)N1—C4—C5—C1−0.8 (3)
C3—N1—C4—N2−177.86 (17)N2—C4—C5—C1177.42 (18)
C3—N1—C4—C50.3 (3)N1—C4—C5—Cl178.52 (13)
N3—N2—C4—N1−9.6 (3)N2—C4—C5—Cl−3.3 (2)
N3—N2—C4—C5172.20 (17)
D—H···AD—HH···AD···AD—H···A
N2—H2A···Cl0.88 (2)2.58 (2)2.970 (2)108 (2)
N2—H2A···N3i0.88 (2)2.28 (2)3.058 (3)148 (2)
N3—H3A···N1ii0.94 (2)2.41 (2)3.243 (3)148 (2)
N3—H3B···N2iii0.90 (2)2.68 (2)3.492 (3)151 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯Cl0.88 (2)2.58 (2)2.970 (2)108 (2)
N2—H2A⋯N3i0.88 (2)2.28 (2)3.058 (3)148 (2)
N3—H3A⋯N1ii0.94 (2)2.41 (2)3.243 (3)148 (2)
N3—H3B⋯N2iii0.90 (2)2.68 (2)3.492 (3)151 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  Rynaxypyr: a new insecticidal anthranilic diamide that acts as a potent and selective ryanodine receptor activator.

Authors:  George P Lahm; Thomas M Stevenson; Thomas P Selby; John H Freudenberger; Daniel Cordova; Lindsey Flexner; Cheryl A Bellin; Christine M Dubas; Ben K Smith; Kenneth A Hughes; J Gary Hollingshaus; Christopher E Clark; Eric A Benner
Journal:  Bioorg Med Chem Lett       Date:  2007-09-07       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  2 in total

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