Literature DB >> 21587510

2-Sulfanyl-idene-1,2-dihydro-pyridine-3-carbohydrazide.

Shahirah Mansor1, Wagee A Yehye, Azhar Ariffin, Seik Weng Ng.   

Abstract

All non-H atoms of the title compound, C(6)H(7)N(3)OS, which exists in the thione form, lie in a common plane (r.m.s. of non-H atoms = 0.08 Å). The amino group of the -NH-NH(2) substituent forms an intra-molecular hydrogen bond to the S atom. The terminal -NH(2) group is pyramidally coordinated; it forms a weak N-H⋯O and a weak N-H⋯S hydrogen bond. Furthermore, the N atom is an acceptor for a C-H⋯N contact. The amino group of the ring is a hydrogen-bond donor to the carbonyl O atom of an adjacent mol-ecule, this inter-action giving rise to a linear chain motif running along the b axis.

Entities:  

Year:  2010        PMID: 21587510      PMCID: PMC2983366          DOI: 10.1107/S160053681003521X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the synthesis of 3-mercaptonicotinoylhydrazide from 3-mercaptonicotinic acid, see: Katz et al. (1958 ▶). For the synthesis of 2-(3,5-di-tert-butyl-4-hydroxybenzylsulfanyl)nicotinic acid, see: Mansor et al. (2008 ▶).

Experimental

Crystal data

C6H7N3OS M = 169.21 Triclinic, a = 7.1952 (2) Å b = 7.4279 (2) Å c = 7.7492 (2) Å α = 88.205 (2)° β = 64.201 (2)° γ = 72.072 (2)° V = 352.22 (2) Å3 Z = 2 Mo Kα radiation μ = 0.40 mm−1 T = 123 K 0.35 × 0.05 × 0.01 mm

Data collection

Bruker SMART APEX diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.874, T max = 0.996 3311 measured reflections 1619 independent reflections 1391 reflections with I > 2σ(I) R int = 0.015

Refinement

R[F 2 > 2σ(F 2)] = 0.034 wR(F 2) = 0.090 S = 1.08 1619 reflections 128 parameters 7 restraints All H-atom parameters refined Δρmax = 0.67 e Å−3 Δρmin = −0.19 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: X-SEED (Barbour, 2001 ▶); software used to prepare material for publication: publCIF (Westrip, 2010 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S160053681003521X/bt5335sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053681003521X/bt5335Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H7N3OSZ = 2
Mr = 169.21F(000) = 176
Triclinic, P1Dx = 1.595 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1952 (2) ÅCell parameters from 1745 reflections
b = 7.4279 (2) Åθ = 2.9–28.3°
c = 7.7492 (2) ŵ = 0.40 mm1
α = 88.205 (2)°T = 123 K
β = 64.201 (2)°Plate, orange
γ = 72.072 (2)°0.35 × 0.05 × 0.01 mm
V = 352.22 (2) Å3
Bruker SMART APEX diffractometer1619 independent reflections
Radiation source: fine-focus sealed tube1391 reflections with I > 2σ(I)
graphiteRint = 0.015
ω scansθmax = 27.5°, θmin = 2.9°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→9
Tmin = 0.874, Tmax = 0.996k = −9→9
3311 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.034Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.090All H-atom parameters refined
S = 1.08w = 1/[σ2(Fo2) + (0.0372P)2 + 0.3308P] where P = (Fo2 + 2Fc2)/3
1619 reflections(Δ/σ)max = 0.001
128 parametersΔρmax = 0.67 e Å3
7 restraintsΔρmin = −0.19 e Å3
xyzUiso*/Ueq
S10.58477 (8)0.32161 (7)0.76922 (7)0.02102 (15)
O10.7744 (2)0.81569 (18)0.44198 (19)0.0210 (3)
N10.8505 (3)0.1589 (2)0.4153 (2)0.0165 (3)
N20.5443 (3)0.7318 (2)0.7129 (2)0.0191 (3)
N30.4375 (3)0.9211 (2)0.8063 (2)0.0218 (4)
C11.0002 (3)0.1308 (3)0.2289 (3)0.0182 (4)
C21.0636 (3)0.2790 (3)0.1432 (3)0.0199 (4)
C30.9635 (3)0.4575 (3)0.2526 (3)0.0181 (4)
C40.8069 (3)0.4870 (2)0.4421 (3)0.0147 (4)
C50.7505 (3)0.3285 (2)0.5345 (3)0.0148 (4)
C60.7070 (3)0.6906 (2)0.5353 (3)0.0160 (4)
H10.805 (4)0.064 (3)0.466 (3)0.036 (7)*
H20.505 (4)0.638 (3)0.776 (3)0.039 (7)*
H30.404 (4)0.991 (3)0.724 (3)0.036 (7)*
H40.533 (3)0.956 (4)0.827 (4)0.032 (7)*
H1A1.059 (3)0.0051 (17)0.165 (3)0.020 (5)*
H2A1.171 (3)0.260 (3)0.0141 (17)0.027 (6)*
H3A1.002 (4)0.565 (2)0.199 (3)0.021 (6)*
U11U22U33U12U13U23
S10.0251 (3)0.0148 (2)0.0172 (2)−0.00847 (18)−0.00306 (19)0.00297 (16)
O10.0259 (7)0.0123 (6)0.0214 (7)−0.0081 (5)−0.0063 (6)0.0033 (5)
N10.0190 (8)0.0107 (7)0.0189 (8)−0.0055 (6)−0.0072 (6)0.0025 (6)
N20.0210 (8)0.0102 (7)0.0194 (8)−0.0041 (6)−0.0039 (7)−0.0003 (6)
N30.0250 (9)0.0114 (7)0.0216 (8)−0.0023 (6)−0.0061 (7)−0.0017 (6)
C10.0199 (9)0.0125 (8)0.0192 (9)−0.0020 (7)−0.0080 (8)−0.0016 (7)
C20.0196 (9)0.0176 (9)0.0161 (9)−0.0041 (7)−0.0036 (7)0.0011 (7)
C30.0208 (9)0.0138 (8)0.0200 (9)−0.0065 (7)−0.0090 (8)0.0047 (7)
C40.0155 (8)0.0110 (8)0.0171 (8)−0.0034 (7)−0.0075 (7)0.0016 (6)
C50.0143 (8)0.0137 (8)0.0160 (8)−0.0041 (7)−0.0067 (7)0.0016 (7)
C60.0163 (8)0.0125 (8)0.0199 (9)−0.0041 (7)−0.0091 (7)0.0023 (7)
S1—C51.696 (2)N3—H40.88 (1)
O1—C61.246 (2)C1—C21.365 (3)
N1—C11.348 (2)C1—H1A0.95 (1)
N1—C51.376 (2)C2—C31.395 (3)
N1—H10.88 (1)C2—H2A0.94 (1)
N2—C61.327 (2)C3—C41.380 (3)
N2—N31.416 (2)C3—H3A0.95 (1)
N2—H20.89 (1)C4—C51.433 (2)
N3—H30.88 (1)C4—C61.507 (2)
C1—N1—C5125.85 (15)C3—C2—H2A121.7 (14)
C1—N1—H1118.5 (17)C4—C3—C2122.34 (17)
C5—N1—H1115.6 (17)C4—C3—H3A116.8 (14)
C6—N2—N3121.63 (15)C2—C3—H3A120.9 (14)
C6—N2—H2119.0 (17)C3—C4—C5119.45 (16)
N3—N2—H2119.3 (17)C3—C4—C6115.35 (15)
N2—N3—H3106.3 (17)C5—C4—C6125.20 (16)
N2—N3—H4107.0 (17)N1—C5—C4114.58 (15)
H3—N3—H4109 (2)N1—C5—S1116.57 (13)
N1—C1—C2119.76 (16)C4—C5—S1128.82 (14)
N1—C1—H1A116.8 (14)O1—C6—N2121.97 (16)
C2—C1—H1A123.4 (14)O1—C6—C4119.33 (16)
C1—C2—C3117.83 (17)N2—C6—C4118.66 (15)
C1—C2—H2A120.5 (14)
C5—N1—C1—C2−0.3 (3)C3—C4—C5—S1173.23 (15)
N1—C1—C2—C3−2.1 (3)C6—C4—C5—S1−7.1 (3)
C1—C2—C3—C40.7 (3)N3—N2—C6—O10.2 (3)
C2—C3—C4—C53.0 (3)N3—N2—C6—C4−177.57 (17)
C2—C3—C4—C6−176.77 (17)C3—C4—C6—O1−2.5 (3)
C1—N1—C5—C43.8 (3)C5—C4—C6—O1177.77 (17)
C1—N1—C5—S1−174.60 (15)C3—C4—C6—N2175.28 (17)
C3—C4—C5—N1−4.9 (3)C5—C4—C6—N2−4.4 (3)
C6—C4—C5—N1174.76 (16)
D—H···AD—HH···AD···AD—H···A
N1—H1···O1i0.88 (1)1.95 (2)2.751 (2)152 (2)
N2—H2···S10.89 (1)2.24 (2)3.007 (2)145 (2)
N3—H3···O1ii0.88 (2)2.36 (3)3.214 (2)166 (3)
N3—H4···S1iii0.88 (3)2.85 (3)3.4173 (18)124 (2)
C2—H2A···N3iv0.94 (1)2.69 (2)3.323 (4)125 (2)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1⋯O1i0.88 (1)1.95 (2)2.751 (2)152 (2)
N2—H2⋯S10.89 (1)2.24 (2)3.007 (2)145 (2)
N3—H3⋯O1ii0.88 (2)2.36 (3)3.214 (2)166 (3)
N3—H4⋯S1iii0.88 (3)2.85 (3)3.4173 (18)124 (2)
C2—H2A⋯N3iv0.94 (1)2.69 (2)3.323 (4)125 (2)

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-(3,5-Di-tert-butyl-4-hydroxy-benzyl-sulfan-yl)nicotinic acid.

Authors:  Shahirah Mansor; Wagee A Yehye; Azhar Ariffin; Noorsaadah Abdul Rahman; Seik Weng Ng
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-08-16
  2 in total

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