| Literature DB >> 21587510 |
Shahirah Mansor1, Wagee A Yehye, Azhar Ariffin, Seik Weng Ng.
Abstract
All non-H atoms of the title compound, C(6)H(7)N(3)OS, which exists in the thione form, lie in a common plane (r.m.s. of non-H atoms = 0.08 Å). The amino group of the -NH-NH(2) substituent forms an intra-molecular hydrogen bond to the S atom. The terminal -NH(2) group is pyramidally coordinated; it forms a weak N-H⋯O and a weak N-H⋯S hydrogen bond. Furthermore, the N atom is an acceptor for a C-H⋯N contact. The amino group of the ring is a hydrogen-bond donor to the carbonyl O atom of an adjacent mol-ecule, this inter-action giving rise to a linear chain motif running along the b axis.Entities:
Year: 2010 PMID: 21587510 PMCID: PMC2983366 DOI: 10.1107/S160053681003521X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C6H7N3OS | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1745 reflections | |
| θ = 2.9–28.3° | |
| µ = 0.40 mm−1 | |
| α = 88.205 (2)° | |
| β = 64.201 (2)° | Plate, orange |
| γ = 72.072 (2)° | 0.35 × 0.05 × 0.01 mm |
| Bruker SMART APEX diffractometer | 1619 independent reflections |
| Radiation source: fine-focus sealed tube | 1391 reflections with |
| graphite | |
| ω scans | θmax = 27.5°, θmin = 2.9° |
| Absorption correction: multi-scan ( | |
| 3311 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| All H-atom parameters refined | |
| 1619 reflections | (Δ/σ)max = 0.001 |
| 128 parameters | Δρmax = 0.67 e Å−3 |
| 7 restraints | Δρmin = −0.19 e Å−3 |
| S1 | 0.58477 (8) | 0.32161 (7) | 0.76922 (7) | 0.02102 (15) | |
| O1 | 0.7744 (2) | 0.81569 (18) | 0.44198 (19) | 0.0210 (3) | |
| N1 | 0.8505 (3) | 0.1589 (2) | 0.4153 (2) | 0.0165 (3) | |
| N2 | 0.5443 (3) | 0.7318 (2) | 0.7129 (2) | 0.0191 (3) | |
| N3 | 0.4375 (3) | 0.9211 (2) | 0.8063 (2) | 0.0218 (4) | |
| C1 | 1.0002 (3) | 0.1308 (3) | 0.2289 (3) | 0.0182 (4) | |
| C2 | 1.0636 (3) | 0.2790 (3) | 0.1432 (3) | 0.0199 (4) | |
| C3 | 0.9635 (3) | 0.4575 (3) | 0.2526 (3) | 0.0181 (4) | |
| C4 | 0.8069 (3) | 0.4870 (2) | 0.4421 (3) | 0.0147 (4) | |
| C5 | 0.7505 (3) | 0.3285 (2) | 0.5345 (3) | 0.0148 (4) | |
| C6 | 0.7070 (3) | 0.6906 (2) | 0.5353 (3) | 0.0160 (4) | |
| H1 | 0.805 (4) | 0.064 (3) | 0.466 (3) | 0.036 (7)* | |
| H2 | 0.505 (4) | 0.638 (3) | 0.776 (3) | 0.039 (7)* | |
| H3 | 0.404 (4) | 0.991 (3) | 0.724 (3) | 0.036 (7)* | |
| H4 | 0.533 (3) | 0.956 (4) | 0.827 (4) | 0.032 (7)* | |
| H1A | 1.059 (3) | 0.0051 (17) | 0.165 (3) | 0.020 (5)* | |
| H2A | 1.171 (3) | 0.260 (3) | 0.0141 (17) | 0.027 (6)* | |
| H3A | 1.002 (4) | 0.565 (2) | 0.199 (3) | 0.021 (6)* |
| S1 | 0.0251 (3) | 0.0148 (2) | 0.0172 (2) | −0.00847 (18) | −0.00306 (19) | 0.00297 (16) |
| O1 | 0.0259 (7) | 0.0123 (6) | 0.0214 (7) | −0.0081 (5) | −0.0063 (6) | 0.0033 (5) |
| N1 | 0.0190 (8) | 0.0107 (7) | 0.0189 (8) | −0.0055 (6) | −0.0072 (6) | 0.0025 (6) |
| N2 | 0.0210 (8) | 0.0102 (7) | 0.0194 (8) | −0.0041 (6) | −0.0039 (7) | −0.0003 (6) |
| N3 | 0.0250 (9) | 0.0114 (7) | 0.0216 (8) | −0.0023 (6) | −0.0061 (7) | −0.0017 (6) |
| C1 | 0.0199 (9) | 0.0125 (8) | 0.0192 (9) | −0.0020 (7) | −0.0080 (8) | −0.0016 (7) |
| C2 | 0.0196 (9) | 0.0176 (9) | 0.0161 (9) | −0.0041 (7) | −0.0036 (7) | 0.0011 (7) |
| C3 | 0.0208 (9) | 0.0138 (8) | 0.0200 (9) | −0.0065 (7) | −0.0090 (8) | 0.0047 (7) |
| C4 | 0.0155 (8) | 0.0110 (8) | 0.0171 (8) | −0.0034 (7) | −0.0075 (7) | 0.0016 (6) |
| C5 | 0.0143 (8) | 0.0137 (8) | 0.0160 (8) | −0.0041 (7) | −0.0067 (7) | 0.0016 (7) |
| C6 | 0.0163 (8) | 0.0125 (8) | 0.0199 (9) | −0.0041 (7) | −0.0091 (7) | 0.0023 (7) |
| S1—C5 | 1.696 (2) | N3—H4 | 0.88 (1) |
| O1—C6 | 1.246 (2) | C1—C2 | 1.365 (3) |
| N1—C1 | 1.348 (2) | C1—H1A | 0.95 (1) |
| N1—C5 | 1.376 (2) | C2—C3 | 1.395 (3) |
| N1—H1 | 0.88 (1) | C2—H2A | 0.94 (1) |
| N2—C6 | 1.327 (2) | C3—C4 | 1.380 (3) |
| N2—N3 | 1.416 (2) | C3—H3A | 0.95 (1) |
| N2—H2 | 0.89 (1) | C4—C5 | 1.433 (2) |
| N3—H3 | 0.88 (1) | C4—C6 | 1.507 (2) |
| C1—N1—C5 | 125.85 (15) | C3—C2—H2A | 121.7 (14) |
| C1—N1—H1 | 118.5 (17) | C4—C3—C2 | 122.34 (17) |
| C5—N1—H1 | 115.6 (17) | C4—C3—H3A | 116.8 (14) |
| C6—N2—N3 | 121.63 (15) | C2—C3—H3A | 120.9 (14) |
| C6—N2—H2 | 119.0 (17) | C3—C4—C5 | 119.45 (16) |
| N3—N2—H2 | 119.3 (17) | C3—C4—C6 | 115.35 (15) |
| N2—N3—H3 | 106.3 (17) | C5—C4—C6 | 125.20 (16) |
| N2—N3—H4 | 107.0 (17) | N1—C5—C4 | 114.58 (15) |
| H3—N3—H4 | 109 (2) | N1—C5—S1 | 116.57 (13) |
| N1—C1—C2 | 119.76 (16) | C4—C5—S1 | 128.82 (14) |
| N1—C1—H1A | 116.8 (14) | O1—C6—N2 | 121.97 (16) |
| C2—C1—H1A | 123.4 (14) | O1—C6—C4 | 119.33 (16) |
| C1—C2—C3 | 117.83 (17) | N2—C6—C4 | 118.66 (15) |
| C1—C2—H2A | 120.5 (14) | ||
| C5—N1—C1—C2 | −0.3 (3) | C3—C4—C5—S1 | 173.23 (15) |
| N1—C1—C2—C3 | −2.1 (3) | C6—C4—C5—S1 | −7.1 (3) |
| C1—C2—C3—C4 | 0.7 (3) | N3—N2—C6—O1 | 0.2 (3) |
| C2—C3—C4—C5 | 3.0 (3) | N3—N2—C6—C4 | −177.57 (17) |
| C2—C3—C4—C6 | −176.77 (17) | C3—C4—C6—O1 | −2.5 (3) |
| C1—N1—C5—C4 | 3.8 (3) | C5—C4—C6—O1 | 177.77 (17) |
| C1—N1—C5—S1 | −174.60 (15) | C3—C4—C6—N2 | 175.28 (17) |
| C3—C4—C5—N1 | −4.9 (3) | C5—C4—C6—N2 | −4.4 (3) |
| C6—C4—C5—N1 | 174.76 (16) |
| H··· | ||||
| N1—H1···O1i | 0.88 (1) | 1.95 (2) | 2.751 (2) | 152 (2) |
| N2—H2···S1 | 0.89 (1) | 2.24 (2) | 3.007 (2) | 145 (2) |
| N3—H3···O1ii | 0.88 (2) | 2.36 (3) | 3.214 (2) | 166 (3) |
| N3—H4···S1iii | 0.88 (3) | 2.85 (3) | 3.4173 (18) | 124 (2) |
| C2—H2A···N3iv | 0.94 (1) | 2.69 (2) | 3.323 (4) | 125 (2) |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| N1—H1⋯O1i | 0.88 (1) | 1.95 (2) | 2.751 (2) | 152 (2) |
| N2—H2⋯S1 | 0.89 (1) | 2.24 (2) | 3.007 (2) | 145 (2) |
| N3—H3⋯O1ii | 0.88 (2) | 2.36 (3) | 3.214 (2) | 166 (3) |
| N3—H4⋯S1iii | 0.88 (3) | 2.85 (3) | 3.4173 (18) | 124 (2) |
| C2—H2 | 0.94 (1) | 2.69 (2) | 3.323 (4) | 125 (2) |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .