Literature DB >> 21585723

geophylobuilder 1.0: an arcgis extension for creating 'geophylogenies'.

David M Kidd1, Xianhua Liu.   

Abstract

Evolution is inherently a spatiotemporal process; however, despite this, phylogenetic and geographical data and models remain largely isolated from one another. Geographical information systems provide a ready-made spatial modelling, analysis and dissemination environment within which phylogenetic models can be explicitly linked with their associated spatial data and subsequently integrated with other georeferenced data sets describing the biotic and abiotic environment. geophylobuilder 1.0 is an extension for the arcgis geographical information system that builds a 'geophylogenetic' data model from a phylogenetic tree and associated geographical data. Geophylogenetic database objects can subsequently be queried, spatially analysed and visualized in both 2D and 3D within a geographical information systems.
© 2007 The Authors.

Year:  2008        PMID: 21585723     DOI: 10.1111/j.1471-8286.2007.01925.x

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  7 in total

1.  Visualising Geophylogenies in Web Maps Using GeoJSON.

Authors:  Roderic Page
Journal:  PLoS Curr       Date:  2015-06-23

2.  Glacial history of the European marine mussels Mytilus, inferred from distribution of mitochondrial DNA lineages.

Authors:  B Smietanka; A Burzyński; H Hummel; R Wenne
Journal:  Heredity (Edinb)       Date:  2014-03-12       Impact factor: 3.821

3.  A geospatial modelling approach integrating archaeobotany and genetics to trace the origin and dispersal of domesticated plants.

Authors:  Jacob van Etten; Robert J Hijmans
Journal:  PLoS One       Date:  2010-08-11       Impact factor: 3.240

4.  Corresponding mitochondrial DNA and niche divergence for crested newt candidate species.

Authors:  Ben Wielstra; Wouter Beukema; Jan W Arntzen; Andrew K Skidmore; Albertus G Toxopeus; Niels Raes
Journal:  PLoS One       Date:  2012-09-28       Impact factor: 3.240

5.  Data issues in the life sciences.

Authors:  Anne E Thessen; David J Patterson
Journal:  Zookeys       Date:  2011-11-28       Impact factor: 1.546

6.  GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework.

Authors:  Donovan H Parks; Timothy Mankowski; Somayyeh Zangooei; Michael S Porter; David G Armanini; Donald J Baird; Morgan G I Langille; Robert G Beiko
Journal:  PLoS One       Date:  2013-07-29       Impact factor: 3.240

7.  The Supramap project: linking pathogen genomes with geography to fight emergent infectious diseases.

Authors:  Daniel A Janies; Travis Treseder; Boyan Alexandrov; Farhat Habib; Jennifer J Chen; Renato Ferreira; Ümit Çatalyürek; Andrés Varón; Ward C Wheeler
Journal:  Cladistics       Date:  2011-01-04       Impact factor: 5.254

  7 in total

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