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Literature DB >> 26146589

Visualising Geophylogenies in Web Maps Using GeoJSON.

Abstract

This article describes a simple tool to display geophylogenies on web maps including Google Maps and OpenStreetMap. The tool reads a NEXUS format file that includes geographic information, and outputs a GeoJSON format file that can be displayed in a web map application.

Entities: Species

Year: 2015 PMID： 26146589 PMCID： PMC4481111 DOI： 10.1371/currents.tol.8f3c6526c49b136b98ec28e00b570a1e

Source DB: PubMed Journal: PLoS Curr ISSN： 2157-3999

12 in total

1. NEXUS: an extensible file format for systematic information.

Authors: D R Maddison; D L Swofford; W P Maddison
Journal: Syst Biol Date: 1997-12 Impact factor: 15.683

2. Geophylogenies and the Map of Life.

Authors: David M Kidd
Journal: Syst Biol Date: 2010-09-10 Impact factor: 15.683

3. Molecular phylogeny of Banza (Orthoptera: Tettigoniidae), the endemic katydids of the Hawaiian Archipelago.

Authors: L H Shapiro; J S Strazanac; G K Roderick
Journal: Mol Phylogenet Evol Date: 2006-04-25 Impact factor: 4.286

4. Genomic analysis and geographic visualization of the spread of avian influenza (H5N1).

Authors: Daniel Janies; Andrew W Hill; Robert Guralnick; Farhat Habib; Eric Waltari; Ward C Wheeler
Journal: Syst Biol Date: 2007-04 Impact factor: 15.683

5. Putting GenBank data on the map.

Authors: Antonio C Marques; Maximiliano M Maronna; Allen G Collins
Journal: Science Date: 2013-09-20 Impact factor: 47.728

6. Quantitative visualization of biological data in Google Earth using R2G2, an R CRAN package.

Authors: Nils Arrigo; Loren P Albert; Pascal G Mickelson; Michael S Barker
Journal: Mol Ecol Resour Date: 2012-09-21 Impact factor: 7.090

7. GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework.

Authors: Donovan H Parks; Timothy Mankowski; Somayyeh Zangooei; Michael S Porter; David G Armanini; Donald J Baird; Morgan G I Langille; Robert G Beiko
Journal: PLoS One Date: 2013-07-29 Impact factor: 3.240

Visualising Geophylogenies in Web Maps Using GeoJSON.

1. NEXUS: an extensible file format for systematic information.

2. Geophylogenies and the Map of Life.

3. Molecular phylogeny of Banza (Orthoptera: Tettigoniidae), the endemic katydids of the Hawaiian Archipelago.

4. Genomic analysis and geographic visualization of the spread of avian influenza (H5N1).

5. Putting GenBank data on the map.

6. Quantitative visualization of biological data in Google Earth using R2G2, an R CRAN package.

7. GenGIS 2: geospatial analysis of traditional and genetic biodiversity, with new gradient algorithms and an extensible plugin framework.

8. Best practices for data sharing in phylogenetic research.

9. A DNA-based registry for all animal species: the barcode index number (BIN) system.

10. BioNames: linking taxonomy, texts, and trees.

Review 1. DNA barcoding and taxonomy: dark taxa and dark texts.