Literature DB >> 21584022

2-Methyl-1,10b-dihydro-5H-pyrazolo[1,5-c][1,3]benzoxazin-5-one.

Viktor Kettmann1, Jan Světlík.   

Abstract

In the title compound, C(11)H(10)N(2)O(2), a potential inhibitor of the cyclo-oxygenase-2 isoenzyme, the pyrazoline ring exists in a flat-envelope conformation while the puckering of the central oxazine ring is more severe. As a result, the mol-ecule as a whole is non-planar. The formal sp(3) pyrazoline N atom is sp(2) hybridized, with the lone-pair electrons delocalized through conjugation with the carbonyl group rather than the double bond of the pyrazoline ring.

Entities:  

Year:  2009        PMID: 21584022      PMCID: PMC2977679          DOI: 10.1107/S1600536809012173

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For cyclo­oxygenase-2 (COX-2), see: Jahng et al. (2004 ▶); Ramatunge et al. (2004 ▶); Subbaramaiah et al. (2002 ▶). For bond parameters, see: Allen et al. (1987 ▶); Burke-Laing & Laing (1976 ▶). For background to the synthesis, see: Palomer et al. (2002 ▶); Světlík et al. (2005 ▶).

Experimental

Crystal data

C11H10N2O2 M = 202.21 Orthorhombic, a = 7.240 (2) Å b = 8.835 (2) Å c = 15.755 (4) Å V = 1007.8 (4) Å3 Z = 4 Mo Kα radiation μ = 0.09 mm−1 T = 296 K 0.30 × 0.25 × 0.20 mm

Data collection

Siemens P4 diffractometer Absorption correction: none 2285 measured reflections 1674 independent reflections 1343 reflections with I > 2σ(I) R int = 0.021 3 standard reflections every 97 reflections intensity decay: none

Refinement

R[F 2 > 2σ(F 2)] = 0.055 wR(F 2) = 0.161 S = 0.96 1674 reflections 137 parameters H-atom parameters constrained Δρmax = 0.26 e Å−3 Δρmin = −0.22 e Å−3 Data collection: XSCANS (Siemens, 1991 ▶); cell refinement: XSCANS; data reduction: XSCANS; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809012173/tk2391sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012173/tk2391Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H10N2O2Dx = 1.333 Mg m3
Mr = 202.21Melting point: 433 K
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 20 reflections
a = 7.240 (2) Åθ = 7–18°
b = 8.835 (2) ŵ = 0.09 mm1
c = 15.755 (4) ÅT = 296 K
V = 1007.8 (4) Å3Prism, colourless
Z = 40.30 × 0.25 × 0.20 mm
F(000) = 424
Siemens P4 diffractometerRint = 0.021
Radiation source: fine-focus sealed tubeθmax = 30.0°, θmin = 2.6°
graphiteh = −1→10
ω/2θ scansk = −1→12
2285 measured reflectionsl = −1→22
1674 independent reflections3 standard reflections every 97 reflections
1343 reflections with I > 2σ(I) intensity decay: none
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.055Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.161H-atom parameters constrained
S = 0.96w = 1/[σ2(Fo2) + (0.058P)2 + 0.7099P] where P = (Fo2 + 2Fc2)/3
1674 reflections(Δ/σ)max = 0.003
137 parametersΔρmax = 0.26 e Å3
0 restraintsΔρmin = −0.22 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.Least-squares planes (x,y,z in crystal coordinates) and deviations from them (* indicates atom used to define plane)- 6.4736 (0.0083) x + 3.9501 (0.0194) y + 0.3894 (0.0333) z = 1.1812 (0.0071)* 0.0059 (0.0012) C1 * -0.0108 (0.0022) C2 * 0.0108 (0.0022) N3 * -0.0060 (0.0012) N4 - 0.3338 (0.0055) C10BRms deviation of fitted atoms = 0.00877.0450 (0.0031) x - 0.1068 (0.0223) y + 3.6269 (0.0223) z = 1.0294 (0.0128)Angle to previous plane (with approximate e.s.d.) = 29.57 (0.16)* -0.0027 (0.0010) O6 * 0.0053 (0.0019) C6A * -0.0050 (0.0018) C10A * 0.0024 (0.0009) C10B -0.6963 (0.0054) N4 - 0.5900 (0.0063) C5Rms deviation of fitted atoms = 0.00417.0642 (0.0025) x - 0.1723 (0.0086) y + 3.4371 (0.0150) z = 0.9846 (0.0059)Angle to previous plane (with approximate e.s.d.) = 0.82 (0.08)* -0.0143 (0.0023) O6 * -0.0087 (0.0029) C6A * 0.0109 (0.0030) C7 * 0.0160 (0.0032) C8 * -0.0063 (0.0031) C9 * -0.0177 (0.0029) C10 * -0.0034 (0.0027) C10A * 0.0234 (0.0023) C10BRms deviation of fitted atoms = 0.0140- 6.2356 (0.0052) x + 4.4868 (0.0103) y - 0.2799 (0.0136) z = 1.4163 (0.0043)Angle to previous plane (with approximate e.s.d.) = 31.34 (0.08)* -0.2463 (0.0027) C10B * 0.1374 (0.0029) C1 * 0.0194 (0.0039) C2 * -0.0476 (0.0032) N3 * -0.0351 (0.0028) N4 * 0.0138 (0.0033) C5 * 0.1614 (0.0027) O6 * 0.0426 (0.0034) C11 * -0.0456 (0.0025) O5Rms deviation of fitted atoms = 0.1123
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.1064 (5)0.4867 (4)−0.11974 (19)0.0540 (8)
H1A0.01970.5671−0.13280.065*
H1B0.21070.4926−0.15820.065*
C20.0157 (5)0.3341 (4)−0.1229 (2)0.0600 (9)
N3−0.0199 (4)0.2741 (3)−0.05137 (18)0.0581 (7)
N40.0479 (4)0.3750 (3)0.00991 (16)0.0484 (6)
C50.0201 (5)0.3524 (4)0.0925 (2)0.0523 (8)
O5−0.0494 (5)0.2447 (3)0.12627 (15)0.0761 (9)
O60.0794 (4)0.4709 (3)0.14279 (14)0.0583 (7)
C6A0.1009 (4)0.6157 (3)0.1075 (2)0.0475 (7)
C70.0800 (5)0.7370 (4)0.1622 (2)0.0594 (9)
H70.05320.72190.21930.071*
C80.1000 (6)0.8811 (4)0.1297 (3)0.0675 (11)
H80.08730.96430.16540.081*
C90.1389 (5)0.9035 (4)0.0445 (3)0.0669 (11)
H90.15071.00110.02300.080*
C100.1601 (5)0.7788 (4)−0.0086 (3)0.0569 (8)
H100.18580.7931−0.06590.068*
C10A0.1430 (4)0.6339 (3)0.0233 (2)0.0431 (6)
C10B0.1680 (5)0.4926 (3)−0.02737 (18)0.0429 (6)
H10B0.29710.4598−0.02350.051*
C11−0.0392 (8)0.2580 (7)−0.2042 (3)0.0990 (19)
H11A−0.09120.1605−0.19180.149*
H11B0.06770.2458−0.23960.149*
H11C−0.12900.3190−0.23310.149*
U11U22U33U12U13U23
C10.060 (2)0.0602 (18)0.0414 (14)−0.0014 (17)0.0052 (15)−0.0004 (14)
C20.062 (2)0.071 (2)0.0464 (16)−0.011 (2)0.0099 (16)−0.0100 (16)
N30.0687 (18)0.0535 (14)0.0521 (14)−0.0145 (16)0.0099 (14)−0.0113 (13)
N40.0602 (15)0.0425 (12)0.0424 (12)−0.0082 (13)0.0002 (12)0.0010 (10)
C50.069 (2)0.0450 (15)0.0434 (14)−0.0054 (17)−0.0015 (16)0.0022 (13)
O50.116 (2)0.0590 (14)0.0528 (13)−0.0199 (17)0.0073 (15)0.0105 (12)
O60.0811 (18)0.0495 (12)0.0442 (11)−0.0036 (13)−0.0074 (13)0.0021 (9)
C6A0.0454 (15)0.0438 (15)0.0532 (17)−0.0029 (14)−0.0089 (14)−0.0026 (13)
C70.058 (2)0.0586 (19)0.0614 (19)0.0009 (18)−0.0116 (17)−0.0163 (17)
C80.061 (2)0.0489 (18)0.092 (3)0.0013 (18)−0.013 (2)−0.023 (2)
C90.055 (2)0.0353 (14)0.110 (3)−0.0010 (15)−0.005 (2)−0.0001 (18)
C100.0453 (16)0.0542 (19)0.071 (2)−0.0042 (15)−0.0013 (17)0.0076 (18)
C10A0.0356 (13)0.0404 (13)0.0533 (16)0.0044 (12)−0.0012 (13)−0.0006 (12)
C10B0.0420 (14)0.0383 (13)0.0484 (15)−0.0037 (12)0.0046 (13)0.0062 (12)
C110.106 (4)0.137 (4)0.054 (2)−0.050 (4)0.016 (2)−0.038 (3)
C1—C21.501 (5)C7—C81.380 (5)
C1—C10B1.523 (4)C7—H70.9300
C1—H1A0.9700C8—C91.385 (6)
C1—H1B0.9700C8—H80.9300
C2—N31.272 (4)C9—C101.393 (5)
C2—C111.499 (5)C9—H90.9300
N3—N41.403 (4)C10—C10A1.381 (4)
N4—C51.332 (4)C10—H100.9300
N4—C10B1.477 (4)C10A—C10B1.493 (4)
C5—O51.200 (4)C10B—H10B0.9800
C5—O61.381 (4)C11—H11A0.9600
O6—C6A1.404 (4)C11—H11B0.9600
C6A—C10A1.371 (4)C11—H11C0.9600
C6A—C71.383 (4)
C2—C1—C10B101.0 (3)C7—C8—H8119.6
C2—C1—H1A111.6C9—C8—H8119.6
C10B—C1—H1A111.6C8—C9—C10119.5 (3)
C2—C1—H1B111.6C8—C9—H9120.3
C10B—C1—H1B111.6C10—C9—H9120.3
H1A—C1—H1B109.4C10A—C10—C9120.3 (3)
N3—C2—C1115.7 (3)C10A—C10—H10119.8
N3—C2—C11121.1 (4)C9—C10—H10119.8
C1—C2—C11123.2 (3)C6A—C10A—C10118.8 (3)
C2—N3—N4105.9 (3)C6A—C10A—C10B116.5 (3)
C5—N4—N3121.6 (3)C10—C10A—C10B124.7 (3)
C5—N4—C10B125.7 (3)N4—C10B—C10A107.7 (2)
N3—N4—C10B112.3 (2)N4—C10B—C1100.6 (3)
O5—C5—N4127.9 (3)C10A—C10B—C1120.3 (3)
O5—C5—O6118.5 (3)N4—C10B—H10B109.2
N4—C5—O6113.6 (3)C10A—C10B—H10B109.2
C5—O6—C6A119.9 (2)C1—C10B—H10B109.2
C10A—C6A—C7122.4 (3)C2—C11—H11A109.5
C10A—C6A—O6121.0 (3)C2—C11—H11B109.5
C7—C6A—O6116.6 (3)H11A—C11—H11B109.5
C8—C7—C6A118.2 (4)C2—C11—H11C109.5
C8—C7—H7120.9H11A—C11—H11C109.5
C6A—C7—H7120.9H11B—C11—H11C109.5
C7—C8—C9120.8 (3)
C10B—C1—C2—N314.6 (4)C8—C9—C10—C10A−0.2 (6)
C10B—C1—C2—C11−168.2 (4)C7—C6A—C10A—C10−1.9 (5)
C1—C2—N3—N4−2.2 (4)O6—C6A—C10A—C10179.1 (3)
C11—C2—N3—N4−179.4 (4)C7—C6A—C10A—C10B177.9 (3)
C2—N3—N4—C5174.6 (4)O6—C6A—C10A—C10B−1.2 (4)
C2—N3—N4—C10B−12.4 (4)C9—C10—C10A—C6A1.5 (5)
N3—N4—C5—O55.9 (7)C9—C10—C10A—C10B−178.3 (3)
C10B—N4—C5—O5−166.1 (4)C5—N4—C10B—C10A−40.0 (4)
N3—N4—C5—O6−173.5 (3)N3—N4—C10B—C10A147.3 (3)
C10B—N4—C5—O614.4 (5)C5—N4—C10B—C1−166.7 (3)
O5—C5—O6—C6A−158.0 (4)N3—N4—C10B—C120.6 (3)
N4—C5—O6—C6A21.5 (5)C6A—C10A—C10B—N430.5 (4)
C5—O6—C6A—C10A−28.5 (5)C10—C10A—C10B—N4−149.8 (3)
C5—O6—C6A—C7152.4 (3)C6A—C10A—C10B—C1144.7 (3)
C10A—C6A—C7—C81.0 (5)C10—C10A—C10B—C1−35.6 (5)
O6—C6A—C7—C8−180.0 (3)C2—C1—C10B—N4−19.1 (3)
C6A—C7—C8—C90.4 (6)C2—C1—C10B—C10A−137.0 (3)
C7—C8—C9—C10−0.8 (6)
  6 in total

1.  Simple aromatic compounds containing propenone moiety show considerable dual COX/5-LOX inhibitory activities.

Authors:  Yurngdong Jahng; Long-Xuan Zhao; Yoon-Soo Moon; Arjun Basnet; Eun-kyung Kim; Hyeun Wook Chang; Hye Kyung Ju; Tae Cheon Jeong; Eung-Seok Lee
Journal:  Bioorg Med Chem Lett       Date:  2004-05-17       Impact factor: 2.823

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Identification of novel cyclooxygenase-2 selective inhibitors using pharmacophore models.

Authors:  Albert Palomer; Francesc Cabré; Jaume Pascual; Joaquín Campos; María A Trujillo; Antonio Entrena; Miguel A Gallo; Lluïsa García; David Mauleón; Antonio Espinosa
Journal:  J Med Chem       Date:  2002-03-28       Impact factor: 7.446

4.  Cyclooxygenase-2 is overexpressed in HER-2/neu-positive breast cancer: evidence for involvement of AP-1 and PEA3.

Authors:  Kotha Subbaramaiah; Larry Norton; William Gerald; Andrew J Dannenberg
Journal:  J Biol Chem       Date:  2002-03-18       Impact factor: 5.157

5.  Synthesis and selective cyclooxygenase-2 inhibitory activity of a series of novel, nitric oxide donor-containing pyrazoles.

Authors:  Ramani R Ranatunge; Michael Augustyniak; Upul K Bandarage; Richard A Earl; James L Ellis; David S Garvey; David R Janero; L Gordon Letts; Allison M Martino; Madhavi G Murty; Stewart K Richardson; Joseph D Schroeder; Matthew J Shumway; S William Tam; A Mark Trocha; Delano V Young
Journal:  J Med Chem       Date:  2004-04-22       Impact factor: 7.446

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.