| Literature DB >> 21583999 |
Prisca K Eckert1, Viktoria H Gessner, Carsten Strohmann.
Abstract
The title compound, C(16)H(34)N(2), is a chiral diamine with fixed R configuration at both stereogenic carbon centres of the cyclo-hexane backbone. Due to their different substituents, the two N atoms also become stereogenic. In the crystal structure, the configuration at one of the two nitro-gen centres is fixed, with the free electron pair pointing inward and the isobutyl group in a trans position towards the cyclo-hexane backbone resulting in an R configuration. The isobutyl group at the second N atom, however, is disordered with 75% S configuration and 25% R configuration. In both cases, the isobutyl group is arranged in a trans position towards the cyclo-hexane backbone.Entities:
Year: 2009 PMID: 21583999 PMCID: PMC2977656 DOI: 10.1107/S160053680901109X
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| C16H34N2 | |
| Orthorhombic, | Mo |
| Hall symbol: P2ac 2ab | Cell parameters from 999 reflections |
| θ = 2.3–25° | |
| µ = 0.06 mm−1 | |
| Plates, colourless | |
| 0.40 × 0.40 × 0.20 mm |
| Bruker SMART APEX CCD diffractometer | 3004 independent reflections |
| Radiation source: fine-focus sealed tube | 2730 reflections with |
| graphite | |
| ω scans | θmax = 25.0°, θmin = 2.3° |
| Absorption correction: multi-scan ( | |
| 20171 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 3004 reflections | (Δ/σ)max < 0.001 |
| 202 parameters | Δρmax = 0.20 e Å−3 |
| 6 restraints | Δρmin = −0.13 e Å−3 |
| Geometry. All e.s.d.s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.s are taken into account individually in the estimation of e.s.d.s in distances, angles and torsion angles; correlations between e.s.d.s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.s is used for estimating e.s.d.s involving l.s. planes. |
| Refinement. Refinement of |
| Occ. (<1) | |||||
| C1 | 0.7243 (2) | 0.2944 (2) | 0.79640 (18) | 0.0615 (6) | |
| H1A | 0.6695 | 0.3257 | 0.7487 | 0.092* | |
| H1B | 0.8141 | 0.3069 | 0.7804 | 0.092* | |
| H1C | 0.7055 | 0.3390 | 0.8514 | 0.092* | |
| C2 | 0.5745 (2) | 0.1385 (2) | 0.84275 (17) | 0.0589 (6) | |
| H2A | 0.5630 | 0.1850 | 0.8988 | 0.071* | |
| H2B | 0.5683 | 0.0493 | 0.8570 | 0.071* | |
| C3 | 0.4646 (2) | 0.1725 (2) | 0.77945 (15) | 0.0546 (6) | |
| H3 | 0.4648 | 0.2643 | 0.7704 | 0.065* | |
| C4 | 0.3389 (2) | 0.1358 (3) | 0.8223 (2) | 0.0727 (8) | |
| H4A | 0.2682 | 0.1572 | 0.7825 | 0.109* | |
| H4B | 0.3288 | 0.1802 | 0.8785 | 0.109* | |
| H4C | 0.3385 | 0.0464 | 0.8334 | 0.109* | |
| C5 | 0.4814 (3) | 0.1104 (3) | 0.69055 (19) | 0.0778 (8) | |
| H5A | 0.4885 | 0.0207 | 0.6990 | 0.117* | |
| H5B | 0.5592 | 0.1415 | 0.6621 | 0.117* | |
| H5C | 0.4075 | 0.1286 | 0.6529 | 0.117* | |
| C6 | 0.7989 (2) | 0.0998 (2) | 0.86174 (14) | 0.0489 (5) | |
| H6 | 0.7655 | 0.0145 | 0.8733 | 0.059* | |
| C7 | 0.8261 (2) | 0.1571 (2) | 0.95317 (15) | 0.0559 (6) | |
| H7A | 0.8633 | 0.2406 | 0.9452 | 0.067* | |
| H7B | 0.7449 | 0.1662 | 0.9861 | 0.067* | |
| C8 | 0.9177 (2) | 0.0778 (3) | 1.00701 (16) | 0.0629 (6) | |
| H8A | 0.9356 | 0.1187 | 1.0644 | 0.075* | |
| H8B | 0.8778 | −0.0035 | 1.0194 | 0.075* | |
| C9 | 1.0415 (3) | 0.0585 (3) | 0.95720 (17) | 0.0649 (7) | |
| H9A | 1.0974 | 0.0020 | 0.9913 | 0.078* | |
| H9B | 1.0862 | 0.1388 | 0.9509 | 0.078* | |
| C10 | 1.0166 (2) | 0.0039 (2) | 0.86573 (17) | 0.0597 (6) | |
| H10A | 0.9798 | −0.0800 | 0.8726 | 0.072* | |
| H10B | 1.0989 | −0.0045 | 0.8339 | 0.072* | |
| C11 | 0.9259 (2) | 0.0829 (2) | 0.81027 (15) | 0.0498 (5) | |
| H11 | 0.9656 | 0.1667 | 0.8048 | 0.060* | |
| C12 | 0.8408 (3) | −0.0772 (2) | 0.71239 (16) | 0.0619 (6) | |
| H12A | 0.7509 | −0.0585 | 0.7245 | 0.093* | |
| H12B | 0.8714 | −0.1392 | 0.7548 | 0.093* | |
| H12C | 0.8492 | −0.1097 | 0.6520 | 0.093* | |
| C14 | 0.9642 (3) | 0.0817 (2) | 0.56237 (16) | 0.0668 (7) | |
| H14 | 0.931 (3) | −0.003 (3) | 0.5418 (19) | 0.075 (8)* | |
| C13A | 0.8956 (3) | 0.1169 (3) | 0.64982 (18) | 0.0542 (7) | 0.75 |
| H13C | 0.9256 | 0.1998 | 0.6686 | 0.065* | 0.75 |
| H13D | 0.8028 | 0.1231 | 0.6380 | 0.065* | 0.75 |
| C15A | 1.1073 (3) | 0.0796 (6) | 0.5758 (4) | 0.1065 (18) | 0.75 |
| H15D | 1.1369 | 0.1625 | 0.5924 | 0.160* | 0.75 |
| H15E | 1.1492 | 0.0541 | 0.5206 | 0.160* | 0.75 |
| H15F | 1.1287 | 0.0208 | 0.6230 | 0.160* | 0.75 |
| C16A | 0.9211 (5) | 0.1727 (3) | 0.4920 (3) | 0.0825 (12) | 0.75 |
| H16D | 0.8284 | 0.1663 | 0.4842 | 0.124* | 0.75 |
| H16E | 0.9637 | 0.1535 | 0.4357 | 0.124* | 0.75 |
| H16F | 0.9432 | 0.2570 | 0.5104 | 0.124* | 0.75 |
| C13B | 1.0029 (8) | 0.0830 (10) | 0.6582 (5) | 0.062 (3) | 0.25 |
| H13A | 1.0842 | 0.0369 | 0.6637 | 0.074* | 0.25 |
| H13B | 1.0204 | 0.1699 | 0.6751 | 0.074* | 0.25 |
| C15B | 1.0898 (9) | 0.1100 (18) | 0.5153 (9) | 0.102 (5) | 0.25 |
| H15A | 1.0741 | 0.1202 | 0.4517 | 0.153* | 0.25 |
| H15B | 1.1497 | 0.0416 | 0.5247 | 0.153* | 0.25 |
| H15C | 1.1263 | 0.1865 | 0.5394 | 0.153* | 0.25 |
| C16B | 0.8646 (9) | 0.1787 (9) | 0.5399 (8) | 0.079 (4) | 0.25 |
| H16A | 0.9004 | 0.2614 | 0.5497 | 0.118* | 0.25 |
| H16B | 0.7896 | 0.1673 | 0.5779 | 0.118* | 0.25 |
| H16C | 0.8394 | 0.1701 | 0.4776 | 0.118* | 0.25 |
| N1 | 0.70037 (17) | 0.16326 (17) | 0.80918 (12) | 0.0488 (4) | |
| N2 | 0.9148 (2) | 0.03281 (19) | 0.72094 (12) | 0.0610 (6) |
| C1 | 0.0625 (14) | 0.0513 (13) | 0.0708 (16) | 0.0042 (11) | 0.0025 (13) | 0.0042 (12) |
| C2 | 0.0647 (14) | 0.0613 (14) | 0.0507 (13) | −0.0004 (11) | 0.0043 (11) | −0.0009 (11) |
| C3 | 0.0584 (13) | 0.0525 (12) | 0.0528 (13) | 0.0063 (11) | −0.0044 (11) | −0.0018 (11) |
| C4 | 0.0608 (14) | 0.0777 (17) | 0.0795 (19) | 0.0068 (13) | 0.0026 (14) | −0.0061 (15) |
| C5 | 0.0804 (18) | 0.096 (2) | 0.0568 (15) | −0.0007 (16) | −0.0078 (15) | −0.0057 (15) |
| C6 | 0.0569 (12) | 0.0472 (12) | 0.0425 (11) | −0.0058 (10) | 0.0003 (10) | 0.0022 (9) |
| C7 | 0.0600 (13) | 0.0661 (14) | 0.0417 (12) | −0.0017 (12) | 0.0012 (10) | −0.0021 (11) |
| C8 | 0.0668 (15) | 0.0772 (16) | 0.0447 (13) | −0.0073 (14) | −0.0073 (12) | 0.0019 (12) |
| C9 | 0.0615 (14) | 0.0754 (17) | 0.0577 (14) | −0.0009 (13) | −0.0100 (12) | 0.0024 (13) |
| C10 | 0.0534 (13) | 0.0625 (15) | 0.0633 (15) | 0.0003 (11) | −0.0009 (12) | −0.0041 (12) |
| C11 | 0.0545 (12) | 0.0490 (11) | 0.0458 (12) | −0.0074 (10) | 0.0008 (10) | −0.0032 (10) |
| C12 | 0.0734 (16) | 0.0575 (14) | 0.0548 (14) | −0.0028 (12) | −0.0042 (12) | −0.0110 (12) |
| C14 | 0.093 (2) | 0.0611 (15) | 0.0467 (13) | −0.0051 (14) | 0.0091 (13) | −0.0048 (12) |
| C13A | 0.0574 (18) | 0.0569 (17) | 0.0483 (18) | −0.0011 (14) | 0.0007 (14) | −0.0032 (14) |
| C15A | 0.093 (4) | 0.144 (5) | 0.083 (3) | 0.033 (3) | 0.031 (3) | 0.022 (4) |
| C16A | 0.125 (4) | 0.077 (2) | 0.045 (2) | −0.008 (3) | 0.001 (2) | −0.0032 (19) |
| C13B | 0.040 (5) | 0.080 (7) | 0.065 (6) | −0.012 (4) | 0.009 (4) | −0.019 (5) |
| C15B | 0.074 (8) | 0.159 (16) | 0.072 (9) | −0.006 (9) | −0.008 (7) | −0.035 (10) |
| C16B | 0.081 (8) | 0.112 (10) | 0.044 (6) | −0.024 (7) | −0.002 (6) | 0.001 (7) |
| N1 | 0.0529 (10) | 0.0485 (10) | 0.0449 (10) | −0.0022 (8) | −0.0001 (8) | 0.0034 (8) |
| N2 | 0.0701 (13) | 0.0672 (12) | 0.0457 (11) | −0.0163 (10) | 0.0073 (10) | −0.0078 (9) |
| C1—N1 | 1.451 (3) | C10—H10B | 0.99 |
| C1—H1A | 0.98 | C11—N2 | 1.456 (3) |
| C1—H1B | 0.98 | C11—H11 | 1 |
| C1—H1C | 0.98 | C12—N2 | 1.425 (3) |
| C2—N1 | 1.437 (3) | C12—H12A | 0.98 |
| C2—C3 | 1.539 (3) | C12—H12B | 0.98 |
| C2—H2A | 0.99 | C12—H12C | 0.98 |
| C2—H2B | 0.99 | C14—C13B | 1.500 (9) |
| C3—C5 | 1.509 (4) | C14—C15A | 1.512 (3) |
| C3—C4 | 1.519 (3) | C14—C16A | 1.516 (3) |
| C3—H3 | 1 | C14—C16B | 1.517 (3) |
| C4—H4A | 0.98 | C14—C15B | 1.525 (3) |
| C4—H4B | 0.98 | C14—C13A | 1.549 (4) |
| C4—H4C | 0.98 | C14—H14 | 1.03 (3) |
| C5—H5A | 0.98 | C13A—N2 | 1.4196 (18) |
| C5—H5B | 0.98 | C13A—H13C | 0.99 |
| C5—H5C | 0.98 | C13A—H13D | 0.99 |
| C6—N1 | 1.470 (3) | C15A—H15D | 0.98 |
| C6—C7 | 1.538 (3) | C15A—H15E | 0.98 |
| C6—C11 | 1.550 (3) | C15A—H15F | 0.98 |
| C6—H6 | 1 | C16A—H16D | 0.98 |
| C7—C8 | 1.521 (3) | C16A—H16E | 0.98 |
| C7—H7A | 0.99 | C16A—H16F | 0.98 |
| C7—H7B | 0.99 | C13B—N2 | 1.428 (2) |
| C8—C9 | 1.512 (4) | C13B—H13A | 0.99 |
| C8—H8A | 0.99 | C13B—H13B | 0.99 |
| C8—H8B | 0.99 | C15B—H15A | 0.98 |
| C9—C10 | 1.522 (4) | C15B—H15B | 0.98 |
| C9—H9A | 0.99 | C15B—H15C | 0.98 |
| C9—H9B | 0.99 | C16B—H16A | 0.98 |
| C10—C11 | 1.527 (3) | C16B—H16B | 0.98 |
| C10—H10A | 0.99 | C16B—H16C | 0.98 |
| N1—C1—H1A | 109.5 | C10—C11—H11 | 107 |
| N1—C1—H1B | 109.5 | C6—C11—H11 | 107 |
| H1A—C1—H1B | 109.5 | N2—C12—H12A | 109.5 |
| N1—C1—H1C | 109.5 | N2—C12—H12B | 109.5 |
| H1A—C1—H1C | 109.5 | H12A—C12—H12B | 109.5 |
| H1B—C1—H1C | 109.5 | N2—C12—H12C | 109.5 |
| N1—C2—C3 | 115.0 (2) | H12A—C12—H12C | 109.5 |
| N1—C2—H2A | 108.5 | H12B—C12—H12C | 109.5 |
| C3—C2—H2A | 108.5 | C15A—C14—C16A | 113.5 (4) |
| N1—C2—H2B | 108.5 | C13B—C14—C16B | 113.2 (7) |
| C3—C2—H2B | 108.5 | C13B—C14—C15B | 102.3 (6) |
| H2A—C2—H2B | 107.5 | C16B—C14—C15B | 110.5 (9) |
| C5—C3—C4 | 111.3 (2) | C15A—C14—C13A | 110.4 (3) |
| C5—C3—C2 | 110.9 (2) | C16A—C14—C13A | 107.4 (3) |
| C4—C3—C2 | 108.8 (2) | C13B—C14—H14 | 113.1 (16) |
| C5—C3—H3 | 108.6 | C15A—C14—H14 | 111.5 (17) |
| C4—C3—H3 | 108.6 | C16A—C14—H14 | 105.3 (16) |
| C2—C3—H3 | 108.6 | C16B—C14—H14 | 108.2 (17) |
| C3—C4—H4A | 109.5 | C15B—C14—H14 | 109.5 (18) |
| C3—C4—H4B | 109.5 | C13A—C14—H14 | 108.5 (17) |
| H4A—C4—H4B | 109.5 | N2—C13A—C14 | 114.8 (2) |
| C3—C4—H4C | 109.5 | N2—C13A—H13C | 108.6 |
| H4A—C4—H4C | 109.5 | C14—C13A—H13C | 108.6 |
| H4B—C4—H4C | 109.5 | N2—C13A—H13D | 108.6 |
| C3—C5—H5A | 109.5 | C14—C13A—H13D | 108.6 |
| C3—C5—H5B | 109.5 | H13C—C13A—H13D | 107.5 |
| H5A—C5—H5B | 109.5 | C14—C15A—H15D | 109.5 |
| C3—C5—H5C | 109.5 | C14—C15A—H15E | 109.5 |
| H5A—C5—H5C | 109.5 | H15D—C15A—H15E | 109.5 |
| H5B—C5—H5C | 109.5 | C14—C15A—H15F | 109.5 |
| N1—C6—C7 | 115.18 (19) | H15D—C15A—H15F | 109.5 |
| N1—C6—C11 | 112.73 (17) | H15E—C15A—H15F | 109.5 |
| C7—C6—C11 | 109.68 (18) | C14—C16A—H16D | 109.5 |
| N1—C6—H6 | 106.2 | C14—C16A—H16E | 109.5 |
| C7—C6—H6 | 106.2 | H16D—C16A—H16E | 109.5 |
| C11—C6—H6 | 106.2 | C14—C16A—H16F | 109.5 |
| C8—C7—C6 | 111.6 (2) | H16D—C16A—H16F | 109.5 |
| C8—C7—H7A | 109.3 | H16E—C16A—H16F | 109.5 |
| C6—C7—H7A | 109.3 | N2—C13B—C14 | 117.4 (6) |
| C8—C7—H7B | 109.3 | N2—C13B—H13A | 108 |
| C6—C7—H7B | 109.3 | C14—C13B—H13A | 108 |
| H7A—C7—H7B | 108 | N2—C13B—H13B | 108 |
| C9—C8—C7 | 110.6 (2) | C14—C13B—H13B | 108 |
| C9—C8—H8A | 109.5 | H13A—C13B—H13B | 107.2 |
| C7—C8—H8A | 109.5 | C14—C15B—H15A | 109.5 |
| C9—C8—H8B | 109.5 | C14—C15B—H15B | 109.5 |
| C7—C8—H8B | 109.5 | H15A—C15B—H15B | 109.5 |
| H8A—C8—H8B | 108.1 | C14—C15B—H15C | 109.5 |
| C8—C9—C10 | 110.9 (2) | H15A—C15B—H15C | 109.5 |
| C8—C9—H9A | 109.5 | H15B—C15B—H15C | 109.5 |
| C10—C9—H9A | 109.5 | C14—C16B—H16A | 109.5 |
| C8—C9—H9B | 109.5 | C14—C16B—H16B | 109.5 |
| C10—C9—H9B | 109.5 | H16A—C16B—H16B | 109.5 |
| H9A—C9—H9B | 108 | C14—C16B—H16C | 109.5 |
| C9—C10—C11 | 112.7 (2) | H16A—C16B—H16C | 109.5 |
| C9—C10—H10A | 109.1 | H16B—C16B—H16C | 109.5 |
| C11—C10—H10A | 109.1 | C2—N1—C1 | 112.73 (19) |
| C9—C10—H10B | 109.1 | C2—N1—C6 | 111.51 (17) |
| C11—C10—H10B | 109.1 | C1—N1—C6 | 113.93 (18) |
| H10A—C10—H10B | 107.8 | C13A—N2—C12 | 112.9 (2) |
| N2—C11—C10 | 110.38 (19) | C12—N2—C13B | 127.4 (5) |
| N2—C11—C6 | 116.00 (19) | C13A—N2—C11 | 118.2 (2) |
| C10—C11—C6 | 108.98 (18) | C12—N2—C11 | 115.92 (18) |
| N2—C11—H11 | 107 | C13B—N2—C11 | 114.9 (4) |