Literature DB >> 21583999

(1R,2R)-N,N'-Diisobutyl-N,N'-dimethyl-cyclo-hexane-1,2-diamine.

Prisca K Eckert1, Viktoria H Gessner, Carsten Strohmann.   

Abstract

The title compound, C(16)H(34)N(2), is a chiral diamine with fixed R configuration at both stereogenic carbon centres of the cyclo-hexane backbone. Due to their different substituents, the two N atoms also become stereogenic. In the crystal structure, the configuration at one of the two nitro-gen centres is fixed, with the free electron pair pointing inward and the isobutyl group in a trans position towards the cyclo-hexane backbone resulting in an R configuration. The isobutyl group at the second N atom, however, is disordered with 75% S configuration and 25% R configuration. In both cases, the isobutyl group is arranged in a trans position towards the cyclo-hexane backbone.

Entities:  

Year:  2009        PMID: 21583999      PMCID: PMC2977656          DOI: 10.1107/S160053680901109X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The synthesis of the title compound is described by Kizirian et al. (2003 ▶). For the crystal structure of the related mol­ecule (1R,2R)-N,N′-dimethyl­cyclo­hexane-1,2-diamine, see Strohmann et al. (2008b ▶). Crystal structures of (1R,2R)-N,N′-tetra­methyl­cyclo­hexane-1,2-diamine coordinated to lithium organyls are described by Strohmann & Gessner (2007a ▶) and Strohmann & Gessner (2008 ▶). Other related diamines coordinated to lithium organyls are specified by Strohmann & Gessner (2007b ▶) and Strohmann et al. (2008a ▶). The use of chiral nitrogen ligands to enhance the stereoselectivity of deprotonation or addition reactions is discussed by Kizirian (2008 ▶) and Stead et al. (2008 ▶).

Experimental

Crystal data

C16H34N2 M = 254.45 Orthorhombic, a = 10.4693 (15) Å b = 10.8013 (16) Å c = 15.077 (2) Å V = 1705.0 (4) Å3 Z = 4 Mo Kα radiation μ = 0.06 mm−1 T = 173 K 0.40 × 0.40 × 0.20 mm

Data collection

Bruker SMART APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.977, T max = 0.989 20171 measured reflections 3004 independent reflections 2730 reflections with I > 2σ(I) R int = 0.051

Refinement

R[F 2 > 2σ(F 2)] = 0.056 wR(F 2) = 0.149 S = 1.06 3004 reflections 202 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.20 e Å−3 Δρmin = −0.13 e Å−3 Absolute structure: not determined in the present model. Absolute configuration: known from starting material Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 1999 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: WinGX (Farrugia, 1999 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680901109X/fi2074sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680901109X/fi2074Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H34N2F(000) = 576
Mr = 254.45Dx = 0.991 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P2ac 2abCell parameters from 999 reflections
a = 10.4693 (15) Åθ = 2.3–25°
b = 10.8013 (16) ŵ = 0.06 mm1
c = 15.077 (2) ÅT = 173 K
V = 1705.0 (4) Å3Plates, colourless
Z = 40.40 × 0.40 × 0.20 mm
Bruker SMART APEX CCD diffractometer3004 independent reflections
Radiation source: fine-focus sealed tube2730 reflections with I > 2σ(I)
graphiteRint = 0.051
ω scansθmax = 25.0°, θmin = 2.3°
Absorption correction: multi-scan (SADABS; Bruker, 1999)h = −12→12
Tmin = 0.977, Tmax = 0.989k = −12→12
20171 measured reflectionsl = −17→17
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.056Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.149H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0787P)2 + 0.3166P] where P = (Fo2 + 2Fc2)/3
3004 reflections(Δ/σ)max < 0.001
202 parametersΔρmax = 0.20 e Å3
6 restraintsΔρmin = −0.13 e Å3
Geometry. All e.s.d.s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.s are taken into account individually in the estimation of e.s.d.s in distances, angles and torsion angles; correlations between e.s.d.s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.s is used for estimating e.s.d.s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
C10.7243 (2)0.2944 (2)0.79640 (18)0.0615 (6)
H1A0.66950.32570.74870.092*
H1B0.81410.30690.78040.092*
H1C0.70550.33900.85140.092*
C20.5745 (2)0.1385 (2)0.84275 (17)0.0589 (6)
H2A0.56300.18500.89880.071*
H2B0.56830.04930.85700.071*
C30.4646 (2)0.1725 (2)0.77945 (15)0.0546 (6)
H30.46480.26430.77040.065*
C40.3389 (2)0.1358 (3)0.8223 (2)0.0727 (8)
H4A0.26820.15720.78250.109*
H4B0.32880.18020.87850.109*
H4C0.33850.04640.83340.109*
C50.4814 (3)0.1104 (3)0.69055 (19)0.0778 (8)
H5A0.48850.02070.69900.117*
H5B0.55920.14150.66210.117*
H5C0.40750.12860.65290.117*
C60.7989 (2)0.0998 (2)0.86174 (14)0.0489 (5)
H60.76550.01450.87330.059*
C70.8261 (2)0.1571 (2)0.95317 (15)0.0559 (6)
H7A0.86330.24060.94520.067*
H7B0.74490.16620.98610.067*
C80.9177 (2)0.0778 (3)1.00701 (16)0.0629 (6)
H8A0.93560.11871.06440.075*
H8B0.8778−0.00351.01940.075*
C91.0415 (3)0.0585 (3)0.95720 (17)0.0649 (7)
H9A1.09740.00200.99130.078*
H9B1.08620.13880.95090.078*
C101.0166 (2)0.0039 (2)0.86573 (17)0.0597 (6)
H10A0.9798−0.08000.87260.072*
H10B1.0989−0.00450.83390.072*
C110.9259 (2)0.0829 (2)0.81027 (15)0.0498 (5)
H110.96560.16670.80480.060*
C120.8408 (3)−0.0772 (2)0.71239 (16)0.0619 (6)
H12A0.7509−0.05850.72450.093*
H12B0.8714−0.13920.75480.093*
H12C0.8492−0.10970.65200.093*
C140.9642 (3)0.0817 (2)0.56237 (16)0.0668 (7)
H140.931 (3)−0.003 (3)0.5418 (19)0.075 (8)*
C13A0.8956 (3)0.1169 (3)0.64982 (18)0.0542 (7)0.75
H13C0.92560.19980.66860.065*0.75
H13D0.80280.12310.63800.065*0.75
C15A1.1073 (3)0.0796 (6)0.5758 (4)0.1065 (18)0.75
H15D1.13690.16250.59240.160*0.75
H15E1.14920.05410.52060.160*0.75
H15F1.12870.02080.62300.160*0.75
C16A0.9211 (5)0.1727 (3)0.4920 (3)0.0825 (12)0.75
H16D0.82840.16630.48420.124*0.75
H16E0.96370.15350.43570.124*0.75
H16F0.94320.25700.51040.124*0.75
C13B1.0029 (8)0.0830 (10)0.6582 (5)0.062 (3)0.25
H13A1.08420.03690.66370.074*0.25
H13B1.02040.16990.67510.074*0.25
C15B1.0898 (9)0.1100 (18)0.5153 (9)0.102 (5)0.25
H15A1.07410.12020.45170.153*0.25
H15B1.14970.04160.52470.153*0.25
H15C1.12630.18650.53940.153*0.25
C16B0.8646 (9)0.1787 (9)0.5399 (8)0.079 (4)0.25
H16A0.90040.26140.54970.118*0.25
H16B0.78960.16730.57790.118*0.25
H16C0.83940.17010.47760.118*0.25
N10.70037 (17)0.16326 (17)0.80918 (12)0.0488 (4)
N20.9148 (2)0.03281 (19)0.72094 (12)0.0610 (6)
U11U22U33U12U13U23
C10.0625 (14)0.0513 (13)0.0708 (16)0.0042 (11)0.0025 (13)0.0042 (12)
C20.0647 (14)0.0613 (14)0.0507 (13)−0.0004 (11)0.0043 (11)−0.0009 (11)
C30.0584 (13)0.0525 (12)0.0528 (13)0.0063 (11)−0.0044 (11)−0.0018 (11)
C40.0608 (14)0.0777 (17)0.0795 (19)0.0068 (13)0.0026 (14)−0.0061 (15)
C50.0804 (18)0.096 (2)0.0568 (15)−0.0007 (16)−0.0078 (15)−0.0057 (15)
C60.0569 (12)0.0472 (12)0.0425 (11)−0.0058 (10)0.0003 (10)0.0022 (9)
C70.0600 (13)0.0661 (14)0.0417 (12)−0.0017 (12)0.0012 (10)−0.0021 (11)
C80.0668 (15)0.0772 (16)0.0447 (13)−0.0073 (14)−0.0073 (12)0.0019 (12)
C90.0615 (14)0.0754 (17)0.0577 (14)−0.0009 (13)−0.0100 (12)0.0024 (13)
C100.0534 (13)0.0625 (15)0.0633 (15)0.0003 (11)−0.0009 (12)−0.0041 (12)
C110.0545 (12)0.0490 (11)0.0458 (12)−0.0074 (10)0.0008 (10)−0.0032 (10)
C120.0734 (16)0.0575 (14)0.0548 (14)−0.0028 (12)−0.0042 (12)−0.0110 (12)
C140.093 (2)0.0611 (15)0.0467 (13)−0.0051 (14)0.0091 (13)−0.0048 (12)
C13A0.0574 (18)0.0569 (17)0.0483 (18)−0.0011 (14)0.0007 (14)−0.0032 (14)
C15A0.093 (4)0.144 (5)0.083 (3)0.033 (3)0.031 (3)0.022 (4)
C16A0.125 (4)0.077 (2)0.045 (2)−0.008 (3)0.001 (2)−0.0032 (19)
C13B0.040 (5)0.080 (7)0.065 (6)−0.012 (4)0.009 (4)−0.019 (5)
C15B0.074 (8)0.159 (16)0.072 (9)−0.006 (9)−0.008 (7)−0.035 (10)
C16B0.081 (8)0.112 (10)0.044 (6)−0.024 (7)−0.002 (6)0.001 (7)
N10.0529 (10)0.0485 (10)0.0449 (10)−0.0022 (8)−0.0001 (8)0.0034 (8)
N20.0701 (13)0.0672 (12)0.0457 (11)−0.0163 (10)0.0073 (10)−0.0078 (9)
C1—N11.451 (3)C10—H10B0.99
C1—H1A0.98C11—N21.456 (3)
C1—H1B0.98C11—H111
C1—H1C0.98C12—N21.425 (3)
C2—N11.437 (3)C12—H12A0.98
C2—C31.539 (3)C12—H12B0.98
C2—H2A0.99C12—H12C0.98
C2—H2B0.99C14—C13B1.500 (9)
C3—C51.509 (4)C14—C15A1.512 (3)
C3—C41.519 (3)C14—C16A1.516 (3)
C3—H31C14—C16B1.517 (3)
C4—H4A0.98C14—C15B1.525 (3)
C4—H4B0.98C14—C13A1.549 (4)
C4—H4C0.98C14—H141.03 (3)
C5—H5A0.98C13A—N21.4196 (18)
C5—H5B0.98C13A—H13C0.99
C5—H5C0.98C13A—H13D0.99
C6—N11.470 (3)C15A—H15D0.98
C6—C71.538 (3)C15A—H15E0.98
C6—C111.550 (3)C15A—H15F0.98
C6—H61C16A—H16D0.98
C7—C81.521 (3)C16A—H16E0.98
C7—H7A0.99C16A—H16F0.98
C7—H7B0.99C13B—N21.428 (2)
C8—C91.512 (4)C13B—H13A0.99
C8—H8A0.99C13B—H13B0.99
C8—H8B0.99C15B—H15A0.98
C9—C101.522 (4)C15B—H15B0.98
C9—H9A0.99C15B—H15C0.98
C9—H9B0.99C16B—H16A0.98
C10—C111.527 (3)C16B—H16B0.98
C10—H10A0.99C16B—H16C0.98
N1—C1—H1A109.5C10—C11—H11107
N1—C1—H1B109.5C6—C11—H11107
H1A—C1—H1B109.5N2—C12—H12A109.5
N1—C1—H1C109.5N2—C12—H12B109.5
H1A—C1—H1C109.5H12A—C12—H12B109.5
H1B—C1—H1C109.5N2—C12—H12C109.5
N1—C2—C3115.0 (2)H12A—C12—H12C109.5
N1—C2—H2A108.5H12B—C12—H12C109.5
C3—C2—H2A108.5C15A—C14—C16A113.5 (4)
N1—C2—H2B108.5C13B—C14—C16B113.2 (7)
C3—C2—H2B108.5C13B—C14—C15B102.3 (6)
H2A—C2—H2B107.5C16B—C14—C15B110.5 (9)
C5—C3—C4111.3 (2)C15A—C14—C13A110.4 (3)
C5—C3—C2110.9 (2)C16A—C14—C13A107.4 (3)
C4—C3—C2108.8 (2)C13B—C14—H14113.1 (16)
C5—C3—H3108.6C15A—C14—H14111.5 (17)
C4—C3—H3108.6C16A—C14—H14105.3 (16)
C2—C3—H3108.6C16B—C14—H14108.2 (17)
C3—C4—H4A109.5C15B—C14—H14109.5 (18)
C3—C4—H4B109.5C13A—C14—H14108.5 (17)
H4A—C4—H4B109.5N2—C13A—C14114.8 (2)
C3—C4—H4C109.5N2—C13A—H13C108.6
H4A—C4—H4C109.5C14—C13A—H13C108.6
H4B—C4—H4C109.5N2—C13A—H13D108.6
C3—C5—H5A109.5C14—C13A—H13D108.6
C3—C5—H5B109.5H13C—C13A—H13D107.5
H5A—C5—H5B109.5C14—C15A—H15D109.5
C3—C5—H5C109.5C14—C15A—H15E109.5
H5A—C5—H5C109.5H15D—C15A—H15E109.5
H5B—C5—H5C109.5C14—C15A—H15F109.5
N1—C6—C7115.18 (19)H15D—C15A—H15F109.5
N1—C6—C11112.73 (17)H15E—C15A—H15F109.5
C7—C6—C11109.68 (18)C14—C16A—H16D109.5
N1—C6—H6106.2C14—C16A—H16E109.5
C7—C6—H6106.2H16D—C16A—H16E109.5
C11—C6—H6106.2C14—C16A—H16F109.5
C8—C7—C6111.6 (2)H16D—C16A—H16F109.5
C8—C7—H7A109.3H16E—C16A—H16F109.5
C6—C7—H7A109.3N2—C13B—C14117.4 (6)
C8—C7—H7B109.3N2—C13B—H13A108
C6—C7—H7B109.3C14—C13B—H13A108
H7A—C7—H7B108N2—C13B—H13B108
C9—C8—C7110.6 (2)C14—C13B—H13B108
C9—C8—H8A109.5H13A—C13B—H13B107.2
C7—C8—H8A109.5C14—C15B—H15A109.5
C9—C8—H8B109.5C14—C15B—H15B109.5
C7—C8—H8B109.5H15A—C15B—H15B109.5
H8A—C8—H8B108.1C14—C15B—H15C109.5
C8—C9—C10110.9 (2)H15A—C15B—H15C109.5
C8—C9—H9A109.5H15B—C15B—H15C109.5
C10—C9—H9A109.5C14—C16B—H16A109.5
C8—C9—H9B109.5C14—C16B—H16B109.5
C10—C9—H9B109.5H16A—C16B—H16B109.5
H9A—C9—H9B108C14—C16B—H16C109.5
C9—C10—C11112.7 (2)H16A—C16B—H16C109.5
C9—C10—H10A109.1H16B—C16B—H16C109.5
C11—C10—H10A109.1C2—N1—C1112.73 (19)
C9—C10—H10B109.1C2—N1—C6111.51 (17)
C11—C10—H10B109.1C1—N1—C6113.93 (18)
H10A—C10—H10B107.8C13A—N2—C12112.9 (2)
N2—C11—C10110.38 (19)C12—N2—C13B127.4 (5)
N2—C11—C6116.00 (19)C13A—N2—C11118.2 (2)
C10—C11—C6108.98 (18)C12—N2—C11115.92 (18)
N2—C11—H11107C13B—N2—C11114.9 (4)
  7 in total

1.  Chiral tertiary diamines in asymmetric synthesis.

Authors:  Jean-Claude Kizirian
Journal:  Chem Rev       Date:  2007-12-15       Impact factor: 60.622

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Crystal structures of n-BuLi adducts with (R,R)-TMCDA and the consequences for the deprotonation of benzene.

Authors:  Carsten Strohmann; Viktoria H Gessner
Journal:  J Am Chem Soc       Date:  2008-08-08       Impact factor: 15.419

4.  Crystal structures of the chiral diamine (R,R)-TMCDA with the commonly used alkyllithium bases methyllithium, iso-propyllithium, and sec-butyllithium.

Authors:  Carsten Strohmann; Viktoria H Gessner
Journal:  J Am Chem Soc       Date:  2007-06-27       Impact factor: 15.419

5.  Isopropyllithium diamine adducts: from a non symmetric aggregate to monomeric i-PrLi.(1R,2R)-N,N,N',N'-tetraethylcyclohexane-1,2-diamine.

Authors:  Carsten Strohmann; Viktoria H Gessner; A Damme
Journal:  Chem Commun (Camb)       Date:  2008-05-20       Impact factor: 6.222

6.  A new sparteine surrogate for asymmetric deprotonation of N-Boc pyrrolidine.

Authors:  Darren Stead; Peter O'Brien; Adam Sanderson
Journal:  Org Lett       Date:  2008-03-07       Impact factor: 6.005

7.  (1R,2R)-N,N'-Dimethyl-cyclo-hexane-1,2-diamine.

Authors:  Carsten Strohmann; Viktoria H Gessner; Alexander Damme; Stephan Koller; Christian Däschlein
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-03-12
  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.