Literature DB >> 21202079

(1R,2R)-N,N'-Dimethyl-cyclo-hexane-1,2-diamine.

Carsten Strohmann1, Viktoria H Gessner, Alexander Damme, Stephan Koller, Christian Däschlein.   

Abstract

The molecule of the title compound, C(8)H(18)N(2), possesses C(2) symmetry. Owing to its stereochemistry, it is used in the synthesis of chiral ligands and metal complexes for asymmetric synthesis. The cyclo-hexane ring shows a chair conformation with the amino groups in equatorial positions. Contrary to the literature, the title compound is not a liquid, but a crystalline solid at room temperature (293 K). The absolute configuration is assigned from the synthesis.

Entities:  

Year:  2008        PMID: 21202079      PMCID: PMC2960996          DOI: 10.1107/S1600536808006119

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The synthesis of the title compound is described by Kizirian et al. (2005 ▶). For related literature, see: Larrox and Jacobsen (1994 ▶); Cole et al. (2005 ▶); Seebach et al. (1977 ▶); Strohmann & Gessner (2007 ▶); Strohmann et al. (2003 ▶, 2004 ▶); Strohmann, Däschlein & Auer (2006 ▶); Strohmann, Dilsky & Strohfeldt (2006 ▶); Strohmmann & Gessner (2007a ▶,b ▶).

Experimental

Crystal data

C8H18N2 M = 142.24 Orthorhombic, a = 7.552 (4) Å b = 8.521 (5) Å c = 14.142 (8) Å V = 910.0 (8) Å3 Z = 4 Mo Kα radiation μ = 0.06 mm−1 T = 173 (2) K 0.40 × 0.10 × 0.10 mm

Data collection

Bruker APEX CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1999 ▶) T min = 0.912, T max = 0.982 4816 measured reflections 953 independent reflections 784 reflections with I > 2σ(I) R int = 0.050

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.111 S = 1.08 953 reflections 101 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.12 e Å−3 Δρmin = −0.12 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT-Plus (Bruker, 1999 ▶); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1999 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536808006119/im2055sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536808006119/im2055Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H18N2F000 = 320
Mr = 142.24Dx = 1.038 Mg m3
Orthorhombic, P212121Melting point: 313 K
Hall symbol: P 2ac 2abMo Kα radiation λ = 0.71073 Å
a = 7.552 (4) Åθ = 2.8–25.0º
b = 8.521 (5) ŵ = 0.06 mm1
c = 14.142 (8) ÅT = 173 (2) K
V = 910.0 (8) Å3Needle, colourless
Z = 40.40 × 0.10 × 0.10 mm
Bruker APEXCCD diffractometer953 independent reflections
Radiation source: fine-focus sealed tube784 reflections with I > 2σ(I)
Monochromator: graphiteRint = 0.050
T = 173(2) Kθmax = 25.0º
ω scansθmin = 2.8º
Absorption correction: multi-scan(SADABS; Bruker, 1999)h = −8→8
Tmin = 0.912, Tmax = 0.982k = −10→9
4816 measured reflectionsl = −16→16
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.051H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.111  w = 1/[σ2(Fo2) + (0.0405P)2 + 0.258P] where P = (Fo2 + 2Fc2)/3
S = 1.08(Δ/σ)max < 0.001
953 reflectionsΔρmax = 0.12 e Å3
101 parametersΔρmin = −0.11 e Å3
Primary atom site location: structure-invariant direct methodsExtinction correction: none
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.8581 (4)0.3857 (3)0.28989 (19)0.0346 (7)
H10.87020.50000.30460.042*
C20.6814 (4)0.3316 (4)0.3294 (2)0.0477 (9)
H2A0.67850.35250.39820.057*
H2B0.67030.21680.32020.057*
C30.5242 (4)0.4129 (5)0.2827 (3)0.0608 (11)
H3A0.41280.36630.30670.073*
H3B0.52470.52560.29990.073*
C40.5304 (4)0.3970 (4)0.1764 (3)0.0528 (10)
H4A0.51310.28570.15860.063*
H4B0.43330.45900.14790.063*
C50.7059 (4)0.4540 (4)0.1385 (2)0.0458 (9)
H5A0.71740.56790.15090.055*
H5B0.70910.43810.06910.055*
C60.8605 (4)0.3685 (3)0.18321 (18)0.0331 (7)
H60.85140.25450.16710.040*
C71.0546 (5)0.3573 (4)0.4252 (2)0.0581 (10)
H7A1.08070.46990.42500.087*
H7B1.15830.29940.44800.087*
H7C0.95370.33670.46700.087*
C81.0664 (5)0.3767 (5)0.0508 (2)0.0644 (11)
H8A1.04920.26290.04650.097*
H8B1.18940.40250.03500.097*
H8C0.98660.42960.00650.097*
N11.0117 (3)0.3064 (4)0.32977 (18)0.0389 (7)
H1N0.985 (4)0.203 (4)0.329 (2)0.056 (10)*
N21.0282 (4)0.4287 (3)0.14644 (19)0.0413 (7)
H2N1.109 (4)0.391 (4)0.193 (2)0.045 (9)*
U11U22U33U12U13U23
C10.0385 (17)0.0216 (15)0.0438 (17)0.0043 (16)0.0006 (14)0.0013 (13)
C20.044 (2)0.0420 (19)0.057 (2)0.0050 (17)0.0110 (17)0.0051 (17)
C30.039 (2)0.053 (2)0.090 (3)0.0029 (19)0.010 (2)0.007 (2)
C40.0335 (19)0.0403 (19)0.085 (3)−0.0023 (17)−0.0126 (19)0.0081 (19)
C50.046 (2)0.0355 (19)0.056 (2)−0.0032 (17)−0.0131 (16)0.0054 (16)
C60.0341 (16)0.0251 (16)0.0400 (17)−0.0025 (15)−0.0054 (14)−0.0008 (13)
C70.068 (2)0.055 (2)0.052 (2)0.010 (2)−0.0109 (18)−0.0046 (18)
C80.057 (2)0.085 (3)0.052 (2)−0.008 (2)0.0120 (18)0.005 (2)
N10.0389 (15)0.0388 (16)0.0390 (15)0.0029 (14)−0.0033 (13)0.0002 (13)
N20.0370 (16)0.0514 (18)0.0355 (15)−0.0048 (14)0.0004 (13)0.0048 (13)
C1—N11.455 (4)C5—H5A0.9900
C1—C61.516 (4)C5—H5B0.9900
C1—C21.519 (4)C6—N21.462 (4)
C1—H11.0000C6—H61.0000
C2—C31.525 (4)C7—N11.454 (4)
C2—H2A0.9900C7—H7A0.9800
C2—H2B0.9900C7—H7B0.9800
C3—C41.511 (5)C7—H7C0.9800
C3—H3A0.9900C8—N21.452 (4)
C3—H3B0.9900C8—H8A0.9800
C4—C51.510 (4)C8—H8B0.9800
C4—H4A0.9900C8—H8C0.9800
C4—H4B0.9900N1—H1N0.91 (4)
C5—C61.515 (4)N2—H2N0.96 (3)
N1—C1—C6109.4 (2)C4—C5—H5B109.2
N1—C1—C2114.6 (2)C6—C5—H5B109.2
C6—C1—C2110.3 (3)H5A—C5—H5B107.9
N1—C1—H1107.4N2—C6—C5110.5 (2)
C6—C1—H1107.4N2—C6—C1109.3 (2)
C2—C1—H1107.4C5—C6—C1111.1 (3)
C1—C2—C3112.8 (3)N2—C6—H6108.6
C1—C2—H2A109.0C5—C6—H6108.6
C3—C2—H2A109.0C1—C6—H6108.6
C1—C2—H2B109.0N1—C7—H7A109.5
C3—C2—H2B109.0N1—C7—H7B109.5
H2A—C2—H2B107.8H7A—C7—H7B109.5
C4—C3—C2111.4 (3)N1—C7—H7C109.5
C4—C3—H3A109.3H7A—C7—H7C109.5
C2—C3—H3A109.3H7B—C7—H7C109.5
C4—C3—H3B109.3N2—C8—H8A109.5
C2—C3—H3B109.3N2—C8—H8B109.5
H3A—C3—H3B108.0H8A—C8—H8B109.5
C5—C4—C3110.6 (3)N2—C8—H8C109.5
C5—C4—H4A109.5H8A—C8—H8C109.5
C3—C4—H4A109.5H8B—C8—H8C109.5
C5—C4—H4B109.5C7—N1—C1113.5 (2)
C3—C4—H4B109.5C7—N1—H1N111 (2)
H4A—C4—H4B108.1C1—N1—H1N106 (2)
C4—C5—C6111.9 (3)C8—N2—C6113.4 (3)
C4—C5—H5A109.2C8—N2—H2N114.6 (19)
C6—C5—H5A109.2C6—N2—H2N100.9 (19)
D—H···AD—HH···AD···AD—H···A
N1—H1N···N2i0.91 (4)2.36 (4)3.250 (4)166 (3)
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1N⋯N2i0.91 (4)2.36 (4)3.250 (4)166 (3)

Symmetry code: (i) .

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  6 in total
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  1 in total

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