Literature DB >> 21583994

2-[(E)-2-(1H-Indol-3-yl)ethen-yl]-1-methyl-pyridinium 4-bromo-benzene-sulfonate.

Suchada Chantrapromma, Thawanrat Kobkeatthawin, Hoong-Kun Fun.   

Abstract

In the title compound, C(16)H(15)N(2) (+)·C(6)H(4)BrO(3)S(-), the cation exists in the E configuration and is essentially planar with a dihedral angle of 3.10 (5)° between the pyridinium ring and the indole ring system. The π-conjugated planes of the cation and the anion are inclined to each other at a dihedral angle of 64.32 (4)°. In the crystal structure, the cations are stacked in an anti-parallel manner along the a axis. The anions are linked into a chain along the a axis. The cations and the anions are linked into a three-dimensional network by N-H⋯O and weak C-H⋯O hydrogen bonds. The crystal structure is further stabilized by C-H⋯π inter-actions. A π-π inter-action between the five-membered heterocyclic ring of the indole system and the pyridinium ring is also observed with a centroid-centroid distance of 3.5855 (7) Å.

Entities:  

Year:  2009        PMID: 21583994      PMCID: PMC2977651          DOI: 10.1107/S1600536809011386

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For bond-length data, see: Allen et al. (1987 ▶). For background to non-linear optical materials research, see: Coe et al. (2003 ▶); Dittrich et al. (2003 ▶); Ogawa et al. (2008 ▶); Otero et al. (2002 ▶); Weir et al. (2003 ▶); Yang et al. (2007 ▶). For related structures, see, for example: Chanawanno et al. (2008 ▶); Chantrapromma et al. (2006 ▶, 2007 ▶, 2008 ▶, 2009 ▶); Jindawong et al. (2005 ▶). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986 ▶).

Experimental

Crystal data

C16H15N2 +·C6H4BrO3S M = 471.36 Monoclinic, a = 7.5188 (1) Å b = 13.3659 (2) Å c = 20.2670 (3) Å β = 98.850 (1)° V = 2012.49 (5) Å3 Z = 4 Mo Kα radiation μ = 2.17 mm−1 T = 100 K 0.31 × 0.27 × 0.16 mm

Data collection

Bruker APEXII CCD area-detector diffractometer Absorption correction: multi-scan (; Bruker, 2005 ▶) T min = 0.548, T max = 0.706 67716 measured reflections 10581 independent reflections 8073 reflections with I > 2σ(I) R int = 0.033

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.085 S = 1.03 10581 reflections 267 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 1.02 e Å−3 Δρmin = −0.66 e Å−3 Data collection: APEX2 (Bruker, 2005 ▶); cell refinement: SAINT (Bruker, 2005 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809011386/is2401sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809011386/is2401Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C16H15N2+·C6H4BrO3SF(000) = 960
Mr = 471.36Dx = 1.556 Mg m3
Monoclinic, P21/cMelting point = 508–510 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 7.5188 (1) ÅCell parameters from 10581 reflections
b = 13.3659 (2) Åθ = 2.0–37.5°
c = 20.2670 (3) ŵ = 2.17 mm1
β = 98.850 (1)°T = 100 K
V = 2012.49 (5) Å3Block, yellow
Z = 40.31 × 0.27 × 0.16 mm
Bruker APEXII CCD area-detector diffractometer10581 independent reflections
Radiation source: sealed tube8073 reflections with I > 2σ(I)
graphiteRint = 0.033
φ and ω scansθmax = 37.5°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2005)h = −11→12
Tmin = 0.548, Tmax = 0.706k = −22→22
67716 measured reflectionsl = −34→34
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.085H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.0369P)2 + 0.9196P] where P = (Fo2 + 2Fc2)/3
10581 reflections(Δ/σ)max = 0.003
267 parametersΔρmax = 1.02 e Å3
0 restraintsΔρmin = −0.66 e Å3
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat [Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107.] operating at 100.0 (1) K.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.437510 (18)0.545613 (9)0.317640 (6)0.02094 (4)
S11.03248 (4)0.87587 (2)0.276111 (13)0.01297 (5)
O11.08595 (14)0.92518 (8)0.33975 (5)0.02417 (19)
O21.17976 (12)0.82343 (7)0.25255 (5)0.02343 (19)
O30.93322 (13)0.94158 (8)0.22583 (5)0.0253 (2)
C170.87426 (15)0.78270 (8)0.29047 (5)0.01413 (18)
C180.92454 (16)0.68277 (9)0.30078 (6)0.01618 (19)
H18A1.04380.66390.30120.019*
C190.79634 (16)0.61112 (9)0.31052 (6)0.0171 (2)
H19A0.82850.54420.31700.021*
C200.61934 (16)0.64165 (8)0.31029 (6)0.01558 (19)
C210.56765 (15)0.74130 (9)0.30144 (6)0.01596 (19)
H21A0.44910.76030.30230.019*
C220.69622 (15)0.81182 (8)0.29127 (6)0.01531 (18)
H22A0.66370.87870.28500.018*
N10.75652 (13)0.79242 (8)0.58104 (5)0.01574 (17)
N20.77966 (15)1.20325 (8)0.35483 (5)0.01918 (19)
C10.77944 (17)0.69502 (9)0.59983 (6)0.0196 (2)
H1A0.75810.67610.64210.024*
C20.83291 (18)0.62419 (9)0.55835 (7)0.0218 (2)
H2A0.84900.55800.57210.026*
C30.86283 (18)0.65363 (9)0.49483 (6)0.0210 (2)
H3A0.89720.60670.46530.025*
C40.84120 (17)0.75234 (9)0.47621 (6)0.0191 (2)
H4A0.86210.77170.43400.023*
C50.78805 (15)0.82472 (9)0.51967 (5)0.01522 (18)
C60.76564 (17)0.92976 (9)0.50349 (6)0.01701 (19)
H6A0.72610.97220.53460.020*
C70.79955 (16)0.96932 (9)0.44504 (6)0.01598 (19)
H7A0.83790.92500.41480.019*
C80.78260 (15)1.07202 (9)0.42496 (5)0.01529 (18)
C90.80825 (16)1.10341 (9)0.36157 (6)0.0178 (2)
H9A0.84041.06180.32860.021*
C100.73615 (16)1.24110 (9)0.41377 (6)0.0181 (2)
C110.69668 (18)1.33969 (10)0.42910 (7)0.0234 (2)
H11A0.69581.39090.39800.028*
C120.65886 (19)1.35765 (10)0.49284 (8)0.0270 (3)
H12A0.63051.42230.50470.032*
C130.66243 (19)1.28055 (11)0.53972 (7)0.0263 (3)
H13A0.63841.29530.58230.032*
C140.70096 (18)1.18259 (10)0.52424 (6)0.0210 (2)
H14A0.70271.13210.55590.025*
C150.73730 (16)1.16115 (9)0.45962 (6)0.01610 (19)
C160.69856 (17)0.86295 (10)0.62973 (6)0.0191 (2)
H16A0.68090.82720.66930.029*
H16B0.58770.89430.61050.029*
H16C0.78940.91320.64100.029*
H1N20.796 (2)1.2377 (15)0.3209 (10)0.028 (5)*
U11U22U33U12U13U23
Br10.02422 (6)0.01477 (5)0.02501 (6)−0.00464 (4)0.00755 (4)−0.00167 (4)
S10.01221 (11)0.01335 (10)0.01371 (10)−0.00058 (8)0.00315 (8)−0.00260 (9)
O10.0282 (5)0.0241 (4)0.0212 (4)−0.0076 (4)0.0070 (3)−0.0102 (4)
O20.0167 (4)0.0236 (4)0.0319 (5)0.0008 (3)0.0096 (3)−0.0090 (4)
O30.0191 (4)0.0244 (5)0.0314 (5)−0.0025 (3)0.0008 (3)0.0130 (4)
C170.0150 (5)0.0134 (4)0.0139 (4)0.0011 (3)0.0021 (3)−0.0009 (3)
C180.0155 (5)0.0147 (4)0.0185 (4)0.0037 (4)0.0031 (3)0.0000 (4)
C190.0210 (5)0.0130 (4)0.0177 (4)0.0029 (4)0.0044 (4)0.0003 (4)
C200.0187 (5)0.0128 (4)0.0156 (4)−0.0010 (4)0.0035 (3)−0.0006 (4)
C210.0150 (5)0.0147 (4)0.0183 (4)0.0008 (4)0.0030 (3)0.0006 (4)
C220.0161 (5)0.0118 (4)0.0181 (4)0.0018 (3)0.0032 (3)0.0004 (4)
N10.0177 (4)0.0157 (4)0.0134 (4)−0.0026 (3)0.0012 (3)0.0000 (3)
N20.0209 (5)0.0179 (4)0.0184 (4)−0.0003 (4)0.0023 (3)0.0052 (4)
C10.0216 (5)0.0172 (5)0.0191 (5)−0.0032 (4)0.0004 (4)0.0039 (4)
C20.0241 (6)0.0150 (5)0.0253 (5)−0.0007 (4)0.0004 (4)0.0023 (4)
C30.0229 (6)0.0165 (5)0.0230 (5)0.0023 (4)0.0020 (4)−0.0021 (4)
C40.0234 (6)0.0175 (5)0.0164 (4)0.0021 (4)0.0032 (4)−0.0001 (4)
C50.0159 (5)0.0156 (4)0.0138 (4)−0.0009 (4)0.0011 (3)0.0007 (4)
C60.0207 (5)0.0151 (4)0.0157 (4)0.0013 (4)0.0044 (4)0.0006 (4)
C70.0180 (5)0.0153 (4)0.0145 (4)0.0004 (4)0.0020 (3)0.0002 (4)
C80.0157 (5)0.0152 (4)0.0148 (4)0.0000 (4)0.0017 (3)0.0008 (4)
C90.0180 (5)0.0186 (5)0.0166 (4)0.0000 (4)0.0025 (4)0.0017 (4)
C100.0161 (5)0.0164 (5)0.0210 (5)−0.0002 (4)0.0006 (4)0.0012 (4)
C110.0200 (6)0.0151 (5)0.0338 (6)0.0013 (4)0.0004 (5)0.0019 (5)
C120.0230 (6)0.0178 (5)0.0402 (7)0.0017 (5)0.0045 (5)−0.0072 (5)
C130.0269 (7)0.0238 (6)0.0290 (6)0.0002 (5)0.0073 (5)−0.0085 (5)
C140.0241 (6)0.0197 (5)0.0197 (5)−0.0005 (4)0.0054 (4)−0.0030 (4)
C150.0154 (5)0.0152 (4)0.0173 (4)−0.0001 (4)0.0016 (3)0.0002 (4)
C160.0233 (6)0.0200 (5)0.0143 (4)−0.0028 (4)0.0043 (4)−0.0022 (4)
Br1—C201.8978 (12)C3—C41.3750 (18)
S1—O11.4492 (9)C3—H3A0.9300
S1—O21.4519 (9)C4—C51.4070 (16)
S1—O31.4604 (10)C4—H4A0.9300
S1—C171.7768 (12)C5—C61.4458 (16)
C17—C181.3952 (16)C6—C71.3568 (16)
C17—C221.3966 (16)C6—H6A0.9300
C18—C191.3942 (17)C7—C81.4318 (16)
C18—H18A0.9300C7—H7A0.9300
C19—C201.3913 (17)C8—C91.3929 (16)
C19—H19A0.9300C8—C151.4498 (16)
C20—C211.3913 (16)C9—H9A0.9300
C21—C221.3881 (16)C10—C111.3961 (18)
C21—H21A0.9300C10—C151.4153 (16)
C22—H22A0.9300C11—C121.386 (2)
N1—C11.3599 (16)C11—H11A0.9300
N1—C51.3712 (15)C12—C131.399 (2)
N1—C161.4782 (16)C12—H12A0.9300
N2—C91.3552 (16)C13—C141.3874 (19)
N2—C101.3821 (16)C13—H13A0.9300
N2—H1N20.850 (19)C14—C151.4079 (17)
C1—C21.3669 (19)C14—H14A0.9300
C1—H1A0.9300C16—H16A0.9600
C2—C31.3971 (19)C16—H16B0.9600
C2—H2A0.9300C16—H16C0.9600
O1—S1—O2113.02 (6)C5—C4—H4A119.3
O1—S1—O3112.93 (6)N1—C5—C4117.17 (10)
O2—S1—O3113.24 (6)N1—C5—C6118.76 (10)
O1—S1—C17105.91 (6)C4—C5—C6124.07 (10)
O2—S1—C17106.22 (6)C7—C6—C5123.06 (11)
O3—S1—C17104.63 (5)C7—C6—H6A118.5
C18—C17—C22120.21 (11)C5—C6—H6A118.5
C18—C17—S1121.51 (9)C6—C7—C8126.96 (11)
C22—C17—S1118.27 (8)C6—C7—H7A116.5
C19—C18—C17120.10 (11)C8—C7—H7A116.5
C19—C18—H18A120.0C9—C8—C7122.14 (11)
C17—C18—H18A119.9C9—C8—C15105.99 (10)
C20—C19—C18118.68 (10)C7—C8—C15131.86 (10)
C20—C19—H19A120.7N2—C9—C8110.32 (11)
C18—C19—H19A120.7N2—C9—H9A124.8
C21—C20—C19121.96 (11)C8—C9—H9A124.8
C21—C20—Br1117.86 (9)N2—C10—C11128.65 (12)
C19—C20—Br1120.10 (9)N2—C10—C15108.22 (10)
C22—C21—C20118.82 (11)C11—C10—C15123.14 (12)
C22—C21—H21A120.6C12—C11—C10116.88 (12)
C20—C21—H21A120.6C12—C11—H11A121.6
C21—C22—C17120.21 (10)C10—C11—H11A121.6
C21—C22—H22A119.9C11—C12—C13121.35 (12)
C17—C22—H22A119.9C11—C12—H12A119.3
C1—N1—C5121.55 (10)C13—C12—H12A119.3
C1—N1—C16117.47 (10)C14—C13—C12121.62 (13)
C5—N1—C16120.98 (10)C14—C13—H13A119.2
C9—N2—C10109.17 (10)C12—C13—H13A119.2
C9—N2—H1N2125.1 (13)C13—C14—C15118.67 (12)
C10—N2—H1N2125.5 (13)C13—C14—H14A120.7
N1—C1—C2121.83 (11)C15—C14—H14A120.7
N1—C1—H1A119.1C14—C15—C10118.33 (11)
C2—C1—H1A119.1C14—C15—C8135.36 (11)
C1—C2—C3118.42 (12)C10—C15—C8106.29 (10)
C1—C2—H2A120.8N1—C16—H16A109.5
C3—C2—H2A120.8N1—C16—H16B109.5
C4—C3—C2119.61 (12)H16A—C16—H16B109.5
C4—C3—H3A120.2N1—C16—H16C109.5
C2—C3—H3A120.2H16A—C16—H16C109.5
C3—C4—C5121.40 (11)H16B—C16—H16C109.5
C3—C4—H4A119.3
O1—S1—C17—C18−98.92 (10)C3—C4—C5—C6179.02 (12)
O2—S1—C17—C1821.50 (11)N1—C5—C6—C7177.69 (11)
O3—S1—C17—C18141.54 (10)C4—C5—C6—C7−2.13 (19)
O1—S1—C17—C2281.05 (10)C5—C6—C7—C8−179.49 (11)
O2—S1—C17—C22−158.53 (9)C6—C7—C8—C9−175.13 (12)
O3—S1—C17—C22−38.49 (10)C6—C7—C8—C153.9 (2)
C22—C17—C18—C191.37 (17)C10—N2—C9—C80.64 (14)
S1—C17—C18—C19−178.65 (9)C7—C8—C9—N2178.35 (11)
C17—C18—C19—C20−0.57 (17)C15—C8—C9—N2−0.92 (14)
C18—C19—C20—C21−0.76 (17)C9—N2—C10—C11179.84 (13)
C18—C19—C20—Br1175.97 (9)C9—N2—C10—C15−0.08 (14)
C19—C20—C21—C221.26 (17)N2—C10—C11—C12−179.37 (13)
Br1—C20—C21—C22−175.54 (8)C15—C10—C11—C120.53 (19)
C20—C21—C22—C17−0.44 (17)C10—C11—C12—C130.8 (2)
C18—C17—C22—C21−0.86 (17)C11—C12—C13—C14−1.1 (2)
S1—C17—C22—C21179.16 (9)C12—C13—C14—C150.1 (2)
C5—N1—C1—C2−0.78 (18)C13—C14—C15—C101.18 (18)
C16—N1—C1—C2−179.93 (11)C13—C14—C15—C8179.66 (13)
N1—C1—C2—C3−0.56 (19)N2—C10—C15—C14178.40 (11)
C1—C2—C3—C41.17 (19)C11—C10—C15—C14−1.52 (18)
C2—C3—C4—C5−0.48 (19)N2—C10—C15—C8−0.48 (13)
C1—N1—C5—C41.44 (16)C11—C10—C15—C8179.60 (12)
C16—N1—C5—C4−179.43 (11)C9—C8—C15—C14−177.76 (14)
C1—N1—C5—C6−178.40 (11)C7—C8—C15—C143.1 (2)
C16—N1—C5—C60.73 (16)C9—C8—C15—C100.84 (13)
C3—C4—C5—N1−0.81 (18)C7—C8—C15—C10−178.33 (12)
D—H···AD—HH···AD···AD—H···A
N2—H1N2···O2i0.85 (2)1.91 (2)2.7593 (14)175.2 (17)
C1—H1A···O3ii0.932.533.2067 (16)130
C7—H7A···O10.932.583.3095 (16)136
C9—H9A···O10.932.583.2426 (16)128
C14—H14A···O1iii0.932.563.2987 (16)137
C16—H16C···O1iii0.962.363.2739 (17)158
C19—H19A···O3iv0.932.513.2052 (16)131
C21—H21A···O2v0.932.283.1310 (15)152
C4—H4A···Cg30.932.823.5579 (13)137
C16—H16A···Cg3vi0.962.693.5731 (13)154
C16—H16B···Cg1vii0.962.743.4836 (14)135
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H1N2⋯O2i0.85 (2)1.91 (2)2.7593 (14)175.2 (17)
C1—H1A⋯O3ii0.932.533.2067 (16)130
C7—H7A⋯O10.932.583.3095 (16)136
C9—H9A⋯O10.932.583.2426 (16)128
C14—H14A⋯O1iii0.932.563.2987 (16)137
C16—H16C⋯O1iii0.962.363.2739 (17)158
C19—H19A⋯O3iv0.932.513.2052 (16)131
C21—H21A⋯O2v0.932.283.1310 (15)152
C4—H4ACg30.932.823.5579 (13)137
C16—H16ACg3vi0.962.693.5731 (13)154
C16—H16BCg1vii0.962.743.4836 (14)135

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) ; (vii) . Cg1 and Cg3 are the centroids of the N2/C8–C10/C15 and C10–C15 rings, respectively.

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1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  2-[(E)-2-(4-Chloro-phen-yl)ethen-yl]-1-methylpyridinium iodide monohydrate.

Authors:  Kullapa Chanawanno; Suchada Chantrapromma; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-09-06

3.  1-Methyl-4-[(E)-2-(2-thien-yl)ethen-yl]pyridinium 4-chloro-benzene-sulfonate.

Authors:  Suchada Chantrapromma; Chotika Laksana; Pumsak Ruanwas; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-13

4.  (E)-4-[4-(Dimethyl-amino)styr-yl]-1-methyl-pyridinium 4-bromo-benzene-sulfonate.

Authors:  Suchada Chantrapromma; Patcharaporn Jansrisewangwong; Rusmeenee Musor; Hoong-Kun Fun
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-08

5.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  5 in total

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