Literature DB >> 21583976

Ethyl 3-carb-oxy-5-nitro-benzoate.

Ya-Ling Liu1, Pei Zou, Min-Hao Xie, Shi-Neng Luo, Yong-Jun He.   

Abstract

In the title compound, C(10)H(9)NO(6), the carb-oxy, ethoxy-carbonyl and nitro groups form dihedral angles of 3.8 (1), 4.5 (1) and 164.8 (1)°, respectively, with the mean plane of the benzene ring. In the crystal structure, mol-ecules lying about inversion centers are linked through O-H⋯O hydrogen bonds. C-H⋯O inter-actions are also present.

Entities:  

Year:  2009        PMID: 21583976      PMCID: PMC2977839          DOI: 10.1107/S160053680901558X

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title compound is an important inter­mediate for the preparation of iodinated X-ray contrast media, such as iotalamic acid, ioxitalamic acid, and ioxilan, which are used clinically all over the world (Morin et al., 1987 ▶; Singh & Rathore, 1980 ▶; Stacul, 2001 ▶). For a related structure, see: Zou et al. (2009 ▶).

Experimental

Crystal data

C10H9NO6 M = 239.18 Monoclinic, a = 14.249 (3) Å b = 4.6450 (9) Å c = 16.536 (4) Å β = 108.401 (3)° V = 1038.5 (4) Å3 Z = 4 Mo Kα radiation μ = 0.13 mm−1 T = 93 K 0.40 × 0.23 × 0.23 mm

Data collection

Rigaku SPIDER diffractometer Absorption correction: none 6542 measured reflections 2355 independent reflections 1967 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.087 S = 0.99 2355 reflections 159 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.54 e Å−3 Δρmin = −0.21 e Å−3 Data collection: RAPID-AUTO (Rigaku, 2004 ▶); cell refinement: RAPID-AUTO; data reduction: RAPID-AUTO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S160053680901558X/pv2153sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S160053680901558X/pv2153Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C10H9NO6F(000) = 496
Mr = 239.18Dx = 1.530 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 3010 reflections
a = 14.249 (3) Åθ = 3.0–27.5°
b = 4.6450 (9) ŵ = 0.13 mm1
c = 16.536 (4) ÅT = 93 K
β = 108.401 (3)°Prism, colorless
V = 1038.5 (4) Å30.40 × 0.23 × 0.23 mm
Z = 4
Rigaku SPIDER diffractometer1967 reflections with I > 2σ(I)
Radiation source: Rotating AnodeRint = 0.024
graphiteθmax = 27.5°, θmin = 3.0°
ω scansh = −18→16
6542 measured reflectionsk = −5→5
2355 independent reflectionsl = −21→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.087H atoms treated by a mixture of independent and constrained refinement
S = 0.99w = 1/[σ2(Fo2) + (0.018P)2 + 0.9P] where P = (Fo2 + 2Fc2)/3
2355 reflections(Δ/σ)max < 0.001
159 parametersΔρmax = 0.54 e Å3
0 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes)are estimated using the full covariance matrix. The cell e.s.d.'s are takeninto account individually in the estimation of e.s.d.'s in distances, anglesand torsion angles; correlations between e.s.d.'s in cell parameters are onlyused when they are defined by crystal symmetry. An approximate (isotropic)treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR andgoodness of fit S are based on F2, conventional R-factors R are basedon F, with F set to zero for negative F2. The threshold expression ofF2 > σ(F2) is used only for calculating R-factors(gt) etc. and isnot relevant to the choice of reflections for refinement. R-factors basedon F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.13780 (9)0.1168 (3)0.34968 (7)0.0298 (3)
O20.03728 (8)0.0126 (3)0.42538 (7)0.0276 (3)
O30.08919 (8)0.5402 (3)0.69486 (7)0.0264 (3)
O40.18028 (8)0.9233 (3)0.71824 (7)0.0254 (3)
O50.42632 (9)1.0386 (3)0.57257 (8)0.0295 (3)
O60.41511 (9)0.7677 (3)0.45857 (8)0.0372 (3)
N10.14799 (9)0.7034 (3)0.67837 (8)0.0204 (3)
C10.16237 (11)0.3639 (3)0.47870 (9)0.0191 (3)
C20.24472 (11)0.5011 (4)0.46934 (10)0.0212 (3)
H20.26620.45700.42190.025*
C30.29609 (11)0.7032 (4)0.52916 (10)0.0207 (3)
C40.26459 (11)0.7719 (3)0.59811 (10)0.0202 (3)
H40.29850.91140.63890.024*
C50.18231 (11)0.6311 (3)0.60566 (9)0.0186 (3)
C60.13113 (11)0.4266 (3)0.54859 (9)0.0188 (3)
H60.07590.33040.55660.023*
C70.10519 (11)0.1465 (4)0.41636 (9)0.0207 (3)
C80.08258 (14)−0.0899 (5)0.28589 (11)0.0362 (5)
H8A0.0140−0.02170.25900.043*
H8B0.0802−0.27880.31290.043*
C90.13330 (17)−0.1176 (6)0.22150 (14)0.0530 (6)
H9A0.13280.06860.19350.064*
H9B0.0991−0.26110.17890.064*
H9C0.2018−0.17870.24910.064*
C100.38474 (12)0.8391 (4)0.51701 (10)0.0242 (4)
H5O0.4809 (18)1.103 (5)0.5597 (14)0.064 (8)*
U11U22U33U12U13U23
O10.0321 (6)0.0351 (7)0.0270 (6)−0.0129 (6)0.0161 (5)−0.0098 (5)
O20.0262 (6)0.0316 (7)0.0261 (6)−0.0117 (5)0.0098 (5)−0.0031 (5)
O30.0269 (6)0.0273 (7)0.0288 (6)−0.0054 (5)0.0143 (5)0.0005 (5)
O40.0235 (6)0.0245 (6)0.0282 (6)−0.0031 (5)0.0080 (5)−0.0077 (5)
O50.0227 (6)0.0336 (7)0.0357 (7)−0.0122 (5)0.0140 (5)−0.0083 (6)
O60.0312 (7)0.0485 (9)0.0394 (7)−0.0200 (6)0.0218 (6)−0.0161 (6)
N10.0171 (6)0.0220 (7)0.0220 (6)0.0000 (5)0.0057 (5)0.0014 (6)
C10.0181 (7)0.0184 (8)0.0202 (7)−0.0002 (6)0.0052 (6)0.0026 (6)
C20.0193 (7)0.0234 (9)0.0219 (7)−0.0006 (6)0.0079 (6)0.0019 (7)
C30.0158 (7)0.0212 (8)0.0248 (7)−0.0020 (6)0.0060 (6)0.0030 (7)
C40.0171 (7)0.0189 (8)0.0229 (7)−0.0010 (6)0.0040 (6)0.0014 (6)
C50.0176 (7)0.0194 (8)0.0191 (7)0.0018 (6)0.0062 (6)0.0032 (6)
C60.0155 (7)0.0188 (8)0.0219 (7)−0.0003 (6)0.0056 (6)0.0051 (6)
C70.0200 (7)0.0217 (9)0.0209 (7)−0.0010 (6)0.0074 (6)0.0024 (6)
C80.0397 (10)0.0404 (12)0.0311 (9)−0.0145 (9)0.0147 (8)−0.0134 (8)
C90.0542 (14)0.0675 (17)0.0422 (12)−0.0140 (12)0.0224 (10)−0.0208 (11)
C100.0197 (8)0.0254 (9)0.0272 (8)−0.0044 (7)0.0070 (6)−0.0007 (7)
O1—C71.3320 (19)C2—H20.9500
O1—C81.460 (2)C3—C41.388 (2)
O2—C71.1986 (19)C3—C101.481 (2)
O3—N11.2230 (17)C4—C51.382 (2)
O4—N11.2242 (17)C4—H40.9500
O5—C101.308 (2)C5—C61.375 (2)
O5—H5O0.92 (3)C6—H60.9500
O6—C101.223 (2)C8—C91.469 (3)
N1—C51.4726 (19)C8—H8A0.9900
C1—C21.386 (2)C8—H8B0.9900
C1—C61.394 (2)C9—H9A0.9800
C1—C71.488 (2)C9—H9B0.9800
C2—C31.392 (2)C9—H9C0.9800
C7—O1—C8114.65 (13)C5—C6—H6120.8
C10—O5—H5O107.3 (15)C1—C6—H6120.8
O3—N1—O4124.39 (13)O2—C7—O1123.74 (15)
O3—N1—C5117.92 (13)O2—C7—C1123.56 (14)
O4—N1—C5117.69 (13)O1—C7—C1112.70 (13)
C2—C1—C6119.97 (14)O1—C8—C9107.75 (16)
C2—C1—C7122.15 (14)O1—C8—H8A110.2
C6—C1—C7117.88 (14)C9—C8—H8A110.2
C1—C2—C3120.29 (14)O1—C8—H8B110.2
C1—C2—H2119.9C9—C8—H8B110.2
C3—C2—H2119.9H8A—C8—H8B108.5
C4—C3—C2120.32 (14)C8—C9—H9A109.5
C4—C3—C10121.61 (14)C8—C9—H9B109.5
C2—C3—C10118.07 (14)H9A—C9—H9B109.5
C5—C4—C3117.97 (14)C8—C9—H9C109.5
C5—C4—H4121.0H9A—C9—H9C109.5
C3—C4—H4121.0H9B—C9—H9C109.5
C6—C5—C4123.11 (14)O6—C10—O5123.54 (15)
C6—C5—N1118.49 (13)O6—C10—C3121.42 (15)
C4—C5—N1118.40 (14)O5—C10—C3115.04 (14)
C5—C6—C1118.31 (14)
C6—C1—C2—C3−0.5 (2)C2—C1—C6—C51.7 (2)
C7—C1—C2—C3179.98 (14)C7—C1—C6—C5−178.76 (13)
C1—C2—C3—C4−0.8 (2)C8—O1—C7—O21.3 (2)
C1—C2—C3—C10178.79 (14)C8—O1—C7—C1−178.77 (14)
C2—C3—C4—C50.9 (2)C2—C1—C7—O2175.54 (15)
C10—C3—C4—C5−178.73 (14)C6—C1—C7—O2−4.0 (2)
C3—C4—C5—C60.4 (2)C2—C1—C7—O1−4.3 (2)
C3—C4—C5—N1−179.71 (13)C6—C1—C7—O1176.11 (14)
O3—N1—C5—C614.8 (2)C7—O1—C8—C9−174.64 (17)
O4—N1—C5—C6−165.20 (13)C4—C3—C10—O6176.32 (16)
O3—N1—C5—C4−165.12 (14)C2—C3—C10—O6−3.3 (2)
O4—N1—C5—C414.9 (2)C4—C3—C10—O5−4.1 (2)
C4—C5—C6—C1−1.7 (2)C2—C3—C10—O5176.29 (14)
N1—C5—C6—C1178.44 (13)
D—H···AD—HH···AD···AD—H···A
O5—H5O···O6i0.92 (3)1.71 (3)2.630 (2)176.7 (17)
C6—H6···O2ii0.952.353.280 (2)165
C9—H9A···O6iii0.982.563.354 (3)138
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O5—H5O⋯O6i0.92 (3)1.71 (3)2.630 (2)176.7 (17)
C6—H6⋯O2ii0.952.353.280 (2)165
C9—H9A⋯O6iii0.982.563.354 (3)138

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

Review 1.  Current iodinated contrast media.

Authors:  F Stacul
Journal:  Eur Radiol       Date:  2001       Impact factor: 5.315

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  [Comparative pharmacokinetics and renal accumulation of the iodized contrast media: ioxitalamic acid, ioxaglic acid and iohexol in the rabbit].

Authors:  J P Morin; I Boutelet; H Toutain; J P Fillastre
Journal:  Pathol Biol (Paris)       Date:  1987-11

4.  Methyl 3-carboxy-5-nitrobenzoate.

Authors:  Pei Zou; Min-Hao Xie; Shi-Neng Luo; Ya-Ling Liu; Yong-Jia Shen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-01-17
  4 in total
  1 in total

1.  Crystal structure of N-(2-hy-droxy-eth-yl)-5-nitro-isophthalamic acid monohydrate.

Authors:  Pei Zou; Hong-Yong Wang; Shi-Neng Luo; Ya-Ling Liu; Yong-Jia Shen
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-29
  1 in total

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