Literature DB >> 21581938

Methyl 3-carboxy-5-nitrobenzoate.

Pei Zou, Min-Hao Xie, Shi-Neng Luo, Ya-Ling Liu, Yong-Jia Shen.   

Abstract

The structure of the title compound, C(9)H(7)NO(6), is essentially planar [maximum deviation 0.284 (2)Å] except for the methyl H atoms. The crystal structure is stabilized by asymmetric O-H⋯O hydrogen bonds linking the hydrogen carboxyl-ates into pairs around the inversion centres. There is also π-π stacking of the benzene rings [centroid-centroid distance 3.6912 (12) Å].

Entities:  

Year:  2009        PMID: 21581938      PMCID: PMC2968314          DOI: 10.1107/S1600536809001093

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

The title complex is as an important inter­mediate for the preparation of iodinated X-ray contrast media, see: Morin et al. (1987 ▶); Singh & Rathore (1980 ▶); Stacul (2001 ▶); Jin & Xiao (2005 ▶).

Experimental

Crystal data

C9H7NO6 M = 225.16 Monoclinic, a = 7.3450 (15) Å b = 8.9050 (18) Å c = 14.474 (3) Å β = 91.18 (3)° V = 946.5 (3) Å3 Z = 4 Mo Kα radiation μ = 0.14 mm−1 T = 293 (2) K 0.30 × 0.20 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.950, T max = 0.977 1859 measured reflections 1717 independent reflections 1284 reflections with I > 2σ(I) R int = 0.021 3 standard reflections every 200 reflections intensity decay: 1.0%

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.105 S = 1.03 1717 reflections 150 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.17 e Å−3 Δρmin = −0.13 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809001093/fb2119sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809001093/fb2119Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C9H7NO6F(000) = 464
Mr = 225.16Dx = 1.580 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 25 reflections
a = 7.3450 (15) Åθ = 10–13°
b = 8.9050 (18) ŵ = 0.14 mm1
c = 14.474 (3) ÅT = 293 K
β = 91.18 (3)°Block, colourless
V = 946.5 (3) Å30.30 × 0.20 × 0.10 mm
Z = 4
Enraf–Nonius CAD-4 diffractometer1284 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.021
graphiteθmax = 25.3°, θmin = 2.7°
ω/2θ scansh = 0→8
Absorption correction: ψ scan (North et al., 1968)k = 0→10
Tmin = 0.950, Tmax = 0.977l = −17→17
1859 measured reflections3 standard reflections every 200 reflections
1717 independent reflections intensity decay: 1.0%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: difference Fourier map
wR(F2) = 0.105H atoms treated by a mixture of independent and constrained refinement
S = 1.03w = 1/[σ2(Fo2) + (0.057P)2 + 0.0354P] where P = (Fo2 + 2Fc2)/3
1717 reflections(Δ/σ)max < 0.001
150 parametersΔρmax = 0.17 e Å3
0 restraintsΔρmin = −0.13 e Å3
23 constraints
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N1.0387 (2)0.49976 (17)0.29780 (10)0.0475 (4)
O11.30752 (17)0.20120 (16)0.64959 (9)0.0588 (4)
C11.4451 (3)0.2024 (3)0.72271 (15)0.0742 (7)
H1A1.43270.11420.76020.111*
H1B1.43010.29020.76030.111*
H1C1.56380.20360.69620.111*
C21.3171 (2)0.3110 (2)0.58767 (12)0.0442 (4)
O21.4321 (2)0.40512 (19)0.58894 (10)0.0769 (5)
C31.1649 (2)0.30531 (18)0.51817 (11)0.0375 (4)
O31.1685 (2)0.58281 (18)0.29145 (11)0.0730 (5)
O40.9140 (2)0.4969 (2)0.24169 (11)0.0832 (6)
C41.0120 (2)0.21563 (18)0.53024 (11)0.0382 (4)
H4A1.00530.15330.58160.046*
O50.70372 (17)0.03897 (15)0.54893 (9)0.0561 (4)
C50.8694 (2)0.21906 (18)0.46585 (12)0.0373 (4)
O60.57474 (18)0.13777 (16)0.42237 (9)0.0560 (4)
H6B0.475 (4)0.072 (3)0.4318 (19)0.119 (10)*
C60.8793 (2)0.31082 (18)0.38850 (11)0.0380 (4)
H6A0.78500.31310.34470.046*
C71.0324 (2)0.39840 (18)0.37824 (11)0.0368 (4)
C81.1757 (2)0.39837 (18)0.44108 (11)0.0379 (4)
H8A1.27710.45890.43230.046*
C90.7057 (2)0.12519 (19)0.48049 (12)0.0396 (4)
U11U22U33U12U13U23
N0.0515 (9)0.0492 (9)0.0419 (9)−0.0049 (8)−0.0003 (7)0.0054 (7)
O10.0542 (8)0.0634 (9)0.0579 (8)−0.0185 (7)−0.0205 (6)0.0167 (7)
C10.0644 (13)0.1017 (19)0.0555 (13)−0.0228 (13)−0.0249 (11)0.0225 (13)
C20.0414 (9)0.0467 (11)0.0443 (10)−0.0094 (9)−0.0046 (8)0.0030 (8)
O20.0626 (9)0.0911 (12)0.0759 (11)−0.0421 (9)−0.0269 (8)0.0280 (9)
C30.0377 (9)0.0344 (9)0.0404 (9)−0.0030 (7)−0.0009 (7)−0.0046 (7)
O30.0685 (10)0.0765 (10)0.0737 (10)−0.0267 (8)−0.0043 (8)0.0321 (8)
O40.0783 (11)0.1067 (14)0.0635 (10)−0.0288 (10)−0.0274 (8)0.0353 (9)
C40.0408 (9)0.0331 (9)0.0407 (9)−0.0040 (7)−0.0017 (7)−0.0005 (7)
O50.0499 (8)0.0578 (8)0.0601 (8)−0.0174 (6)−0.0112 (6)0.0174 (7)
C50.0369 (8)0.0324 (9)0.0424 (9)−0.0027 (7)−0.0020 (7)−0.0053 (7)
O60.0454 (8)0.0569 (9)0.0650 (9)−0.0201 (7)−0.0184 (7)0.0123 (7)
C60.0396 (9)0.0369 (9)0.0373 (9)−0.0014 (8)−0.0049 (7)−0.0040 (7)
C70.0409 (9)0.0355 (9)0.0342 (8)−0.0027 (7)0.0020 (7)−0.0005 (7)
C80.0332 (8)0.0370 (9)0.0436 (10)−0.0037 (7)0.0034 (7)−0.0050 (8)
C90.0420 (9)0.0330 (9)0.0435 (10)−0.0055 (8)−0.0060 (8)−0.0006 (8)
N—O31.211 (2)C4—C51.388 (2)
N—O41.2122 (19)C4—H4A0.9300
N—C71.475 (2)O5—C91.254 (2)
O1—C21.329 (2)C5—C61.389 (2)
O1—C11.448 (2)C5—C91.483 (2)
C1—H1A0.9600O6—C91.270 (2)
C1—H1B0.9600O6—H6B0.95 (3)
C1—H1C0.9600C6—C71.379 (2)
C2—O21.190 (2)C6—H6A0.9300
C2—C31.489 (2)C7—C81.377 (2)
C3—C41.393 (2)C8—H8A0.9300
C3—C81.393 (2)
O3—N—O4123.18 (16)C3—C4—H4A119.9
O3—N—C7118.11 (15)C4—C5—C6120.19 (15)
O4—N—C7118.71 (15)C4—C5—C9119.62 (15)
C2—O1—C1116.20 (15)C6—C5—C9120.19 (15)
O1—C1—H1A109.5C9—O6—H6B115.3 (17)
O1—C1—H1B109.5C7—C6—C5118.42 (15)
H1A—C1—H1B109.5C7—C6—H6A120.8
O1—C1—H1C109.5C5—C6—H6A120.8
H1A—C1—H1C109.5C8—C7—C6122.86 (15)
H1B—C1—H1C109.5C8—C7—N119.05 (15)
O2—C2—O1123.71 (17)C6—C7—N118.05 (15)
O2—C2—C3123.86 (17)C7—C8—C3118.28 (15)
O1—C2—C3112.41 (15)C7—C8—H8A120.9
C4—C3—C8120.06 (15)C3—C8—H8A120.9
C4—C3—C2122.07 (15)O5—C9—O6123.82 (16)
C8—C3—C2117.81 (15)O5—C9—C5118.73 (15)
C5—C4—C3120.18 (16)O6—C9—C5117.45 (15)
C5—C4—H4A119.9
C1—O1—C2—O21.4 (3)C5—C6—C7—N−177.71 (14)
C1—O1—C2—C3−177.00 (17)O3—N—C7—C8−2.1 (2)
O2—C2—C3—C4−165.32 (18)O4—N—C7—C8178.43 (17)
O1—C2—C3—C413.1 (2)O3—N—C7—C6175.95 (17)
O2—C2—C3—C812.0 (3)O4—N—C7—C6−3.6 (2)
O1—C2—C3—C8−169.58 (15)C6—C7—C8—C30.1 (2)
C8—C3—C4—C5−0.3 (2)N—C7—C8—C3178.04 (14)
C2—C3—C4—C5176.95 (16)C4—C3—C8—C7−0.1 (2)
C3—C4—C5—C60.7 (2)C2—C3—C8—C7−177.46 (15)
C3—C4—C5—C9−178.81 (15)C4—C5—C9—O5−3.4 (2)
C4—C5—C6—C7−0.6 (2)C6—C5—C9—O5177.14 (16)
C9—C5—C6—C7178.84 (15)C4—C5—C9—O6176.41 (16)
C5—C6—C7—C80.2 (2)C6—C5—C9—O6−3.1 (2)
D—H···AD—HH···AD···AD—H···A
O6—H6B···O5i0.95 (3)1.67 (3)2.6206 (19)177.9 (17)
C8—H8A···O2ii0.932.483.406 (2)174
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O6—H6B⋯O5i0.95 (3)1.67 (3)2.6206 (19)177.9 (17)
C8—H8A⋯O2ii0.932.483.406 (2)174

Symmetry codes: (i) ; (ii) .

  3 in total

Review 1.  Current iodinated contrast media.

Authors:  F Stacul
Journal:  Eur Radiol       Date:  2001       Impact factor: 5.315

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  [Comparative pharmacokinetics and renal accumulation of the iodized contrast media: ioxitalamic acid, ioxaglic acid and iohexol in the rabbit].

Authors:  J P Morin; I Boutelet; H Toutain; J P Fillastre
Journal:  Pathol Biol (Paris)       Date:  1987-11
  3 in total
  1 in total

1.  Ethyl 3-carb-oxy-5-nitro-benzoate.

Authors:  Ya-Ling Liu; Pei Zou; Min-Hao Xie; Shi-Neng Luo; Yong-Jun He
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-04-30
  1 in total

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