Literature DB >> 21583946

Genistein-3'-sulfonic acid dihydrate.

Chang-Peng Zhang1, Hao Ni, Hai-Yan Tu, Yong-Rong Xie, Rui-Qing Yang.   

Abstract

IN THE TITLE COMPOUND [SYSTEMATIC NAME: 5-(5,7-dihydr-oxy-4-oxo-4H-chromen-yl)-2-hydroxy-benzene-sulfonic acid dihydrate], C(15)H(10)O(8)S·2H(2)O, the benzopyran-one ring is not coplanar with the phenyl ring, the dihedral angle between them being 41.35 (3)°. No H atom was placed on the sulphonic acid group because it was not possible to distinguish between the two S=O bonds and the S-O bond. In the crystal, the mol-ecules are linked by classical O-H⋯O and C-H⋯O intra- and inter-molecular hydrogen bonds and aromatic π-π stacking inter-actions [centroid-centroid distance of 3.4523 (14) Å between the 1, 4-pyran-one rings and the benzene rings, and 3.6337 (14) Å between the benzene rings] into a supra-molecular structure.

Entities:  

Year:  2009        PMID: 21583946      PMCID: PMC2977809          DOI: 10.1107/S1600536809014767

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Genistein is an isoflavone that can be extracted from plants such as soybean, trifolium, puerarin, see: Curnow et al. (1955 ▶); Kaufman et al. (1997 ▶). For its anti-tumour, anti-arteriosclerosis and anti-bone loss properties, see: Fritz et al. (1998 ▶); Zhu et al. (2006 ▶). It can also reduce plasma lipids and kill various cancer cells without damaging normal cells, see: Fanti et al. (1998 ▶); Lamartiniere (2000 ▶). It has poor solubility in water and fat (Suo et al., 2005 ▶). One effective way to increase the solubility of these compounds is to involve a sulfonate group, see: Kopacz (1981 ▶); Pusz et al. (2001 ▶); Xie et al. (2002 ▶).

Experimental

Crystal data

C15H10O8S·2H2O M = 386.31 Triclinic, a = 7.9100 (4) Å b = 8.1977 (3) Å c = 14.3431 (7) Å α = 73.626 (3)° β = 80.346 (3)° γ = 65.498 (3)° V = 810.61 (6) Å3 Z = 2 Mo Kα radiation μ = 0.26 mm−1 T = 296 K 0.20 × 0.20 × 0.05 mm

Data collection

Bruker SMART APEXII CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.952, T max = 0.988 7136 measured reflections 3736 independent reflections 2466 reflections with I > 2σ(I) R int = 0.037

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.114 S = 0.95 3736 reflections 262 parameters H-atom parameters constrained Δρmax = 0.52 e Å−3 Δρmin = −0.47 e Å−3 Data collection: SMART (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809014767/fl2244sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809014767/fl2244Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C15H10O8S·2H2OV = 810.61 (6) Å3
Mr = 386.31Z = 2
Triclinic, P1F(000) = 398
Hall symbol: -P 1Dx = 1.579 Mg m3
a = 7.9100 (4) ÅMo Kα radiation, λ = 0.71073 Å
b = 8.1977 (3) Åθ = 2.8–27.6°
c = 14.3431 (7) ŵ = 0.26 mm1
α = 73.626 (3)°T = 296 K
β = 80.346 (3)°Block, yellow
γ = 65.498 (3)°0.20 × 0.20 × 0.05 mm
Bruker SMART APEXII CCD area-detector diffractometer3736 independent reflections
Radiation source: fine-focus sealed tube2466 reflections with I > 2σ(I)
graphiteRint = 0.037
φ and ω scansθmax = 27.6°, θmin = 2.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −9→10
Tmin = 0.952, Tmax = 0.988k = −10→10
7136 measured reflectionsl = −16→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.114H-atom parameters constrained
S = 0.95w = 1/[σ2(Fo2) + (0.0499P)2] where P = (Fo2 + 2Fc2)/3
3736 reflections(Δ/σ)max < 0.001
262 parametersΔρmax = 0.52 e Å3
0 restraintsΔρmin = −0.47 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/UeqOcc. (<1)
S10.91573 (8)0.62831 (8)0.13396 (4)0.02871 (17)
O10.3853 (2)0.9816 (2)0.33901 (11)0.0349 (4)
O20.2966 (2)1.1865 (2)0.46121 (12)0.0463 (5)
H2A0.33711.15350.41010.056*
O30.0060 (2)0.9940 (2)0.76568 (11)0.0441 (5)
H3A0.03261.06990.78040.053*
O40.1972 (2)0.62379 (19)0.54241 (11)0.0325 (4)
O50.7199 (2)0.4397 (2)0.05141 (12)0.0483 (5)
H5A0.83240.41280.04920.058*
C10.3351 (3)0.8670 (3)0.40347 (15)0.0263 (5)
C20.2545 (3)0.9026 (3)0.49667 (15)0.0246 (5)
C30.2355 (3)1.0616 (3)0.52404 (16)0.0296 (5)
C40.1563 (3)1.0929 (3)0.61293 (17)0.0339 (6)
H4A0.14651.19760.63030.041*
C50.0900 (3)0.9663 (3)0.67758 (16)0.0305 (5)
C60.1018 (3)0.8113 (3)0.65325 (16)0.0299 (5)
H6A0.05500.72900.69590.036*
C70.1848 (3)0.7812 (3)0.56408 (16)0.0263 (5)
C80.2829 (3)0.5863 (3)0.45676 (16)0.0313 (5)
H8A0.29440.47620.44480.038*
C90.3528 (3)0.6939 (3)0.38735 (15)0.0261 (5)
C100.4469 (3)0.6336 (3)0.29699 (15)0.0265 (5)
C110.3792 (3)0.5469 (3)0.25092 (17)0.0352 (6)
H11A0.26930.53040.27530.042*
C120.4730 (3)0.4846 (3)0.16923 (18)0.0392 (6)
H12A0.42490.42770.13910.047*
C130.6385 (3)0.5062 (3)0.13165 (16)0.0317 (5)
C140.7058 (3)0.5965 (3)0.17563 (15)0.0250 (5)
C150.6094 (3)0.6585 (3)0.25784 (15)0.0259 (5)
H15A0.65540.71810.28720.031*
O1W0.6658 (3)0.1139 (2)0.02597 (15)0.0646 (6)
H30.76770.02880.04700.078*
H40.68000.21400.01910.078*
O2W0.3261 (3)0.0875 (3)0.13170 (15)0.0775 (7)
H10.42610.09880.10450.093*
H20.23630.18630.13980.093*
O6A0.9142 (16)0.6736 (12)0.0261 (8)0.0346 (14)0.54
O7A1.067 (2)0.456 (2)0.1681 (9)0.043 (2)0.54
O8A0.8999 (11)0.7821 (10)0.1651 (4)0.0369 (13)0.54
O6B0.899 (2)0.7323 (15)0.0381 (10)0.067 (3)0.46
O7B1.059 (2)0.450 (3)0.1480 (12)0.069 (5)0.46
O8B0.9427 (13)0.7255 (13)0.2012 (5)0.061 (3)0.46
U11U22U33U12U13U23
S10.0283 (3)0.0327 (3)0.0301 (3)−0.0149 (3)0.0043 (2)−0.0138 (3)
O10.0453 (10)0.0311 (9)0.0315 (9)−0.0208 (8)0.0095 (7)−0.0101 (7)
O20.0694 (13)0.0418 (10)0.0434 (11)−0.0385 (10)0.0200 (9)−0.0212 (8)
O30.0580 (12)0.0550 (11)0.0329 (10)−0.0313 (10)0.0116 (8)−0.0246 (8)
O40.0455 (10)0.0261 (8)0.0295 (9)−0.0185 (8)0.0071 (7)−0.0101 (7)
O50.0406 (10)0.0809 (13)0.0468 (11)−0.0340 (10)0.0169 (8)−0.0454 (10)
C10.0241 (11)0.0258 (11)0.0273 (12)−0.0086 (10)−0.0008 (9)−0.0061 (10)
C20.0267 (11)0.0224 (11)0.0249 (12)−0.0098 (9)0.0003 (9)−0.0068 (9)
C30.0311 (12)0.0291 (12)0.0326 (13)−0.0152 (10)0.0024 (10)−0.0105 (10)
C40.0380 (13)0.0367 (13)0.0367 (14)−0.0181 (11)0.0011 (10)−0.0197 (11)
C50.0292 (12)0.0394 (13)0.0235 (12)−0.0107 (11)0.0007 (9)−0.0133 (10)
C60.0332 (13)0.0296 (12)0.0269 (12)−0.0140 (10)0.0017 (9)−0.0056 (10)
C70.0267 (12)0.0236 (11)0.0287 (12)−0.0085 (10)−0.0020 (9)−0.0080 (10)
C80.0374 (13)0.0267 (12)0.0318 (13)−0.0123 (11)0.0066 (10)−0.0154 (10)
C90.0250 (11)0.0253 (11)0.0280 (12)−0.0090 (10)0.0009 (9)−0.0091 (10)
C100.0275 (11)0.0263 (11)0.0253 (12)−0.0090 (10)0.0012 (9)−0.0093 (9)
C110.0296 (13)0.0463 (14)0.0379 (14)−0.0203 (12)0.0054 (10)−0.0180 (12)
C120.0363 (14)0.0562 (16)0.0432 (15)−0.0268 (13)0.0056 (11)−0.0299 (13)
C130.0318 (13)0.0403 (13)0.0272 (12)−0.0145 (11)0.0030 (9)−0.0163 (11)
C140.0239 (11)0.0253 (11)0.0257 (12)−0.0096 (9)−0.0003 (9)−0.0064 (9)
C150.0257 (11)0.0262 (11)0.0272 (12)−0.0084 (10)−0.0033 (9)−0.0101 (9)
O1W0.0601 (13)0.0449 (11)0.0873 (16)−0.0203 (10)−0.0079 (11)−0.0116 (11)
O2W0.0639 (15)0.0834 (15)0.0737 (16)−0.0237 (13)0.0042 (11)−0.0139 (12)
O6A0.036 (2)0.045 (3)0.023 (2)−0.015 (3)0.0032 (16)−0.011 (2)
O7A0.029 (3)0.051 (6)0.043 (3)−0.018 (3)−0.009 (2)0.005 (3)
O8A0.048 (3)0.048 (3)0.035 (3)−0.031 (2)0.003 (2)−0.024 (2)
O6B0.056 (5)0.095 (9)0.041 (6)−0.041 (6)0.002 (4)0.014 (5)
O7B0.025 (5)0.032 (5)0.129 (13)0.000 (4)0.019 (6)−0.018 (7)
O8B0.051 (5)0.123 (8)0.053 (5)−0.058 (5)0.022 (3)−0.065 (5)
S1—O6B1.394 (14)C4—C51.399 (3)
S1—O8A1.404 (7)C4—H4A0.9300
S1—O7B1.412 (16)C5—C61.374 (3)
S1—O7A1.438 (14)C6—C71.375 (3)
S1—O6A1.487 (11)C6—H6A0.9300
S1—O8B1.501 (8)C8—C91.342 (3)
S1—C141.766 (2)C8—H8A0.9300
O1—C11.262 (2)C9—C101.487 (3)
O2—C31.356 (3)C10—C151.385 (3)
O2—H2A0.8207C10—C111.389 (3)
O3—C51.358 (2)C11—C121.384 (3)
O3—H3A0.8205C11—H11A0.9300
O4—C81.350 (2)C12—C131.392 (3)
O4—C71.372 (2)C12—H12A0.9300
O5—C131.360 (2)C13—C141.390 (3)
O5—H5A0.8206C14—C151.395 (3)
C1—C21.435 (3)C15—H15A0.9300
C1—C91.447 (3)O1W—H30.8508
C2—C71.401 (3)O1W—H40.8502
C2—C31.408 (3)O2W—H10.8500
C3—C41.366 (3)O2W—H20.8500
O8A—S1—O7A117.5 (7)C6—C5—C4121.3 (2)
O8A—S1—O6A110.1 (4)C5—C6—C7118.1 (2)
O7A—S1—O6A110.5 (6)C5—C6—H6A121.0
O8A—S1—C14105.6 (3)C7—C6—H6A121.0
O7A—S1—C14107.8 (7)O4—C7—C6116.80 (19)
O6A—S1—C14104.3 (5)O4—C7—C2120.09 (19)
O6B—S1—O7B115.3 (8)C6—C7—C2123.1 (2)
O6B—S1—O8B112.3 (5)C9—C8—O4125.7 (2)
O7B—S1—O8B107.7 (8)C9—C8—H8A117.2
O6B—S1—C14108.5 (6)O4—C8—H8A117.2
O8A—S1—C14105.6 (3)C8—C9—C1118.4 (2)
O7B—S1—C14106.3 (9)C8—C9—C10119.97 (19)
O7A—S1—C14107.8 (7)C1—C9—C10121.67 (18)
O6A—S1—C14104.3 (5)C15—C10—C11118.0 (2)
O8B—S1—C14106.2 (4)C15—C10—C9120.2 (2)
C3—O2—H2A109.4C11—C10—C9121.7 (2)
C5—O3—H3A109.5C12—C11—C10120.9 (2)
C8—O4—C7118.66 (16)C12—C11—H11A119.5
C13—O5—H5A109.4C10—C11—H11A119.5
O1—C1—C2121.64 (19)C11—C12—C13120.7 (2)
O1—C1—C9122.13 (19)C11—C12—H12A119.6
C2—C1—C9116.23 (18)C13—C12—H12A119.6
C7—C2—C3116.69 (19)O5—C13—C14124.9 (2)
C7—C2—C1120.75 (19)O5—C13—C12116.1 (2)
C3—C2—C1122.53 (19)C14—C13—C12119.0 (2)
O2—C3—C4119.2 (2)C13—C14—C15119.4 (2)
O2—C3—C2119.6 (2)C13—C14—S1122.28 (16)
C4—C3—C2121.2 (2)C15—C14—S1118.27 (17)
C3—C4—C5119.6 (2)C10—C15—C14121.9 (2)
C3—C4—H4A120.2C10—C15—H15A119.1
C5—C4—H4A120.2C14—C15—H15A119.1
O3—C5—C6117.1 (2)H3—O1W—H4105.1
O3—C5—C4121.6 (2)H1—O2W—H2116.1
D—H···AD—HH···AD···AD—H···A
O2W—H1···O1W0.852.072.915 (3)173
O2W—H2···O7Ai0.852.172.999 (15)165
O2W—H2···O6Aii0.852.582.903 (13)104
O2—H2A···O10.821.852.580 (2)148
O1W—H3···O8Aiii0.852.232.968 (7)146
O3—H3A···O8Aiv0.821.892.705 (8)171
O1W—H4···O50.852.183.000 (2)162
O5—H5A···O6A0.822.402.835 (12)114
O5—H5A···O6Av0.822.052.784 (14)148
C6—H6A···O7Avi0.932.443.356 (15)169
C8—H8A···O2iii0.932.313.217 (3)164
C15—H15A···O10.932.522.944 (3)108
C15—H15A···O8A0.932.502.868 (9)104
CgCgαDCCτ
Cg1Cg2i1.383.4524 (14)15.63
Cg2Cg2i0.033.6336 (14)24.54
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O2W—H1⋯O1W0.852.072.915 (3)173
O2W—H2⋯O7Ai0.852.172.999 (15)165
O2W—H2⋯O6Aii0.852.582.903 (13)104
O2—H2A⋯O10.821.852.580 (2)148
O1W—H3⋯O8Aiii0.852.232.968 (7)146
O3—H3A⋯O8Aiv0.821.892.705 (8)171
O1W—H4⋯O50.852.183.000 (2)162
O5—H5A⋯O6A0.822.402.835 (12)114
O5—H5A⋯O6Av0.822.052.784 (14)148
C6—H6A⋯O7Avi0.932.443.356 (15)169
C8—H8A⋯O2iii0.932.313.217 (3)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) .

  8 in total

Review 1.  Protection against breast cancer with genistein: a component of soy.

Authors:  C A Lamartiniere
Journal:  Am J Clin Nutr       Date:  2000-06       Impact factor: 7.045

2.  The occurrence of genistein in subterranean clover (T. subterraneum, L.) and other trifolium species.

Authors:  D H CURNOW; R C ROSSITER
Journal:  Aust J Exp Biol Med Sci       Date:  1955-04

3.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

4.  Experimental study on genistein prevention and treatment of transplant arteriosclerosis in aortic transplants of rat.

Authors:  G C Zhu; Z Ding; Z S Chen; C Dong; H Guo; B C Chen
Journal:  Transplant Proc       Date:  2006-12       Impact factor: 1.066

5.  A comparative survey of leguminous plants as sources of the isoflavones, genistein and daidzein: implications for human nutrition and health.

Authors:  P B Kaufman; J A Duke; H Brielmann; J Boik; J E Hoyt
Journal:  J Altern Complement Med       Date:  1997       Impact factor: 2.579

6.  The phytoestrogen genistein reduces bone loss in short-term ovariectomized rats.

Authors:  P Fanti; M C Monier-Faugere; Z Geng; J Schmidt; P E Morris; D Cohen; H H Malluche
Journal:  Osteoporos Int       Date:  1998       Impact factor: 4.507

7.  Dietary genistein: perinatal mammary cancer prevention, bioavailability and toxicity testing in the rat.

Authors:  W A Fritz; L Coward; J Wang; C A Lamartiniere
Journal:  Carcinogenesis       Date:  1998-12       Impact factor: 4.944

8.  Two chiral coordination polymers: preparation and X-ray structures of mono(4-sulfo-L-phenylalanine)(diaqua) zinc(II) and copper(II) complexes.

Authors:  Yong-Rong Xie; Ren-Gen Xiong; Xiang Xue; Xue-Tai Chen; Ziling Xue; Xiao-Zeng You
Journal:  Inorg Chem       Date:  2002-06-17       Impact factor: 5.165

  8 in total

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