Literature DB >> 21583924

(E)-2-{(2-Hydroxy-naphthalen-1-yl)methyl-ene}hydrazinecarboxamide.

Yousef M Hijji, Oyebola Oladeinde, Ray J Butcher, Jerry P Jasinski.   

Abstract

In the title mol-ecule, C(12)H(11)N(3)O(2), the dihedral angle between the mean planes of the naphthalene and carboxamide groups is 28.9 (8)°. The hydrazine N atoms are twisted slightly out of the plane of the carboxamide group [C-C-N-N torsion angle = -175.06 (13)°]. The crystal packing is influenced by N-H⋯O hydrogen bonding which includes a bifurcated hydrogen bond between the amide N atom and nearby carboxyl and hydroxyl O atoms. A second bifurcated hydrogen bond occurs between the hydroxyl O atom and nearby amide (inter-molecular) and hydrazine (intra-molecular) N atoms. As a result, mol-ecules are linked into a co-operative hydrogen-bonded network of infinite one-dimensional O-H⋯O-H⋯O-H chains along the (101) plane of the unit cell in a zigzag pattern, the dihedral angle between the mean planes of the naphthalene groups of adjacent mol-ecules in the chain being 86.9 (2)°. A MOPAC PM3 calculation provides support to these observations.

Entities:  

Year:  2009        PMID: 21583924      PMCID: PMC2977788          DOI: 10.1107/S1600536809014561

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related semicarbazones, see: Noblia et al. (2005 ▶). For the bioactivity of semicarbazones, see: Beraldo & Gambino (2004 ▶). For their applications in polymers, see: Khuhawar et al. (2004 ▶) and in sensors, see: Oter et al. (2007 ▶).

Experimental

Crystal data

C12H11N3O2 M = 229.24 Monoclinic, a = 16.0886 (4) Å b = 4.72900 (10) Å c = 15.6452 (4) Å β = 114.647 (3)° V = 1081.89 (5) Å3 Z = 4 Cu Kα radiation μ = 0.82 mm−1 T = 200 K 0.57 × 0.22 × 0.12 mm

Data collection

Oxford Diffraction Gemini R diffractometer Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007 ▶) T min = 0.819, T max = 0.907 7383 measured reflections 2135 independent reflections 1724 reflections with I > 2σ(I) R int = 0.031

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.124 S = 1.03 2135 reflections 155 parameters H-atom parameters constrained Δρmax = 0.30 e Å−3 Δρmin = −0.26 e Å−3 Data collection: CrysAlisPro (Oxford Diffraction, 2007 ▶); cell refinement: CrysAlisPro; data reduction: CrysAlis RED (Oxford Diffraction, 2007 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL and WebMOPro (Schmidt & Polik, 2007 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809014561/rk2136sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809014561/rk2136Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C12H11N3O2F(000) = 480
Mr = 229.24Dx = 1.407 Mg m3
Monoclinic, P21/cCu Kα radiation, λ = 1.54184 Å
Hall symbol: -P 2ybcCell parameters from 4156 reflections
a = 16.0886 (4) Åθ = 5.2–73.5°
b = 4.7290 (1) ŵ = 0.82 mm1
c = 15.6452 (4) ÅT = 200 K
β = 114.647 (3)°Needle, pale yellow
V = 1081.89 (5) Å30.57 × 0.22 × 0.12 mm
Z = 4
Oxford Diffraction Gemini R diffractometer2135 independent reflections
Radiation source: Fine–focus sealed tube1724 reflections with I > 2σ(I)
GraphiteRint = 0.031
Detector resolution: 10.5081 pixels mm-1θmax = 73.5°, θmin = 5.7°
φ and ω scansh = −18→20
Absorption correction: multi-scan (CrysAlis RED; Oxford Diffraction, 2007)k = −4→5
Tmin = 0.819, Tmax = 0.907l = −19→19
7383 measured reflections
Refinement on F2Primary atom site location: Direct
Least-squares matrix: FullSecondary atom site location: Difmap
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: Geom
wR(F2) = 0.124H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0706P)2 + 0.3033P] where P = (Fo2 + 2Fc2)/3
2135 reflections(Δ/σ)max < 0.001
155 parametersΔρmax = 0.30 e Å3
0 restraintsΔρmin = −0.26 e Å3
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R–factor wR and goodness of fit S are based on F2, conventional R–factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R–factors(gt) etc. and is not relevant to the choice of reflections for refinement. R–factors based on F2 are statistically about twice as large as those based on F, and R–factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.31323 (8)0.7964 (3)0.22177 (8)0.0437 (3)
H1O0.34980.67740.25790.052*
O20.56353 (8)−0.0031 (2)0.42849 (8)0.0369 (3)
N10.38963 (8)0.4986 (3)0.37070 (9)0.0317 (3)
N20.44479 (9)0.2745 (3)0.41411 (9)0.0332 (3)
H2A0.43220.16780.45330.040*
N30.54082 (10)0.4022 (3)0.34432 (10)0.0391 (4)
H3A0.58810.37060.33120.047*
H3B0.50760.55570.32310.047*
C10.26235 (9)0.7936 (3)0.34640 (10)0.0280 (3)
C20.25746 (10)0.8928 (4)0.26045 (10)0.0325 (4)
C30.19255 (11)1.0963 (4)0.20808 (11)0.0391 (4)
H3C0.19021.15860.14940.047*
C40.13328 (11)1.2044 (4)0.24071 (12)0.0386 (4)
H4A0.08961.34130.20440.046*
C50.13540 (10)1.1162 (3)0.32839 (11)0.0325 (4)
C60.07427 (11)1.2315 (4)0.36314 (12)0.0408 (4)
H6A0.03121.37070.32740.049*
C70.07638 (12)1.1455 (4)0.44726 (13)0.0438 (4)
H7A0.03451.22250.46940.053*
C80.14048 (12)0.9437 (4)0.50068 (12)0.0414 (4)
H8A0.14190.88490.55930.050*
C90.20126 (10)0.8293 (4)0.46977 (11)0.0348 (4)
H9A0.24470.69420.50770.042*
C100.20044 (9)0.9091 (3)0.38214 (10)0.0287 (3)
C110.32667 (10)0.5704 (3)0.39663 (10)0.0291 (3)
H11A0.32200.47820.44840.035*
C120.51931 (10)0.2162 (3)0.39678 (10)0.0303 (3)
U11U22U33U12U13U23
O10.0468 (7)0.0513 (8)0.0418 (6)0.0135 (6)0.0272 (5)0.0132 (5)
O20.0394 (6)0.0298 (6)0.0446 (6)0.0091 (5)0.0208 (5)0.0026 (5)
N10.0305 (6)0.0290 (7)0.0354 (6)0.0038 (5)0.0135 (5)0.0024 (5)
N20.0337 (7)0.0283 (7)0.0408 (7)0.0063 (5)0.0187 (6)0.0074 (5)
N30.0418 (7)0.0330 (8)0.0523 (8)0.0081 (6)0.0293 (6)0.0057 (6)
C10.0251 (7)0.0271 (8)0.0302 (7)−0.0010 (6)0.0098 (6)0.0006 (6)
C20.0321 (8)0.0330 (9)0.0334 (7)0.0003 (6)0.0145 (6)0.0011 (6)
C30.0410 (9)0.0404 (10)0.0333 (8)0.0023 (7)0.0129 (7)0.0090 (7)
C40.0319 (8)0.0347 (9)0.0408 (8)0.0056 (7)0.0068 (6)0.0065 (7)
C50.0252 (7)0.0282 (8)0.0400 (8)−0.0020 (6)0.0095 (6)−0.0039 (6)
C60.0293 (8)0.0355 (9)0.0531 (10)0.0042 (7)0.0127 (7)−0.0048 (7)
C70.0355 (8)0.0447 (10)0.0569 (10)−0.0011 (7)0.0249 (8)−0.0148 (8)
C80.0410 (9)0.0459 (10)0.0426 (9)−0.0037 (8)0.0226 (7)−0.0081 (8)
C90.0332 (8)0.0363 (9)0.0352 (8)0.0024 (6)0.0146 (6)−0.0016 (6)
C100.0247 (7)0.0263 (8)0.0333 (7)−0.0036 (6)0.0103 (6)−0.0045 (6)
C110.0293 (7)0.0279 (8)0.0296 (7)−0.0002 (6)0.0119 (6)0.0002 (6)
C120.0305 (7)0.0289 (8)0.0310 (7)0.0008 (6)0.0125 (6)−0.0044 (6)
O1—C21.3534 (19)C3—H3C0.9500
O1—H1O0.8400C4—C51.421 (2)
O2—C121.2386 (18)C4—H4A0.9500
N1—C111.284 (2)C5—C61.416 (2)
N1—N21.3674 (18)C5—C101.424 (2)
N2—C121.3630 (19)C6—C71.364 (3)
N2—H2A0.8800C6—H6A0.9500
N3—C121.343 (2)C7—C81.398 (3)
N3—H3A0.8800C7—H7A0.9500
N3—H3B0.8800C8—C91.370 (2)
C1—C21.395 (2)C8—H8A0.9500
C1—C101.438 (2)C9—C101.417 (2)
C1—C111.457 (2)C9—H9A0.9500
C2—C31.405 (2)C11—H11A0.9500
C3—C41.355 (2)
C2—O1—H1O109.5C4—C5—C10119.23 (14)
C11—N1—N2118.82 (13)C7—C6—C5120.90 (16)
C12—N2—N1120.02 (13)C7—C6—H6A119.6
C12—N2—H2A120.0C5—C6—H6A119.6
N1—N2—H2A120.0C6—C7—C8119.71 (16)
C12—N3—H3A120.0C6—C7—H7A120.1
C12—N3—H3B120.0C8—C7—H7A120.1
H3A—N3—H3B120.0C9—C8—C7121.05 (16)
C2—C1—C10118.52 (13)C9—C8—H8A119.5
C2—C1—C11120.34 (14)C7—C8—H8A119.5
C10—C1—C11121.10 (13)C8—C9—C10121.09 (15)
O1—C2—C1122.44 (14)C8—C9—H9A119.5
O1—C2—C3116.10 (14)C10—C9—H9A119.5
C1—C2—C3121.45 (14)C9—C10—C5117.57 (14)
C4—C3—C2120.48 (15)C9—C10—C1123.14 (14)
C4—C3—H3C119.8C5—C10—C1119.29 (14)
C2—C3—H3C119.8N1—C11—C1119.82 (13)
C3—C4—C5121.03 (15)N1—C11—H11A120.1
C3—C4—H4A119.5C1—C11—H11A120.1
C5—C4—H4A119.5O2—C12—N3122.81 (14)
C6—C5—C4121.10 (15)O2—C12—N2119.71 (14)
C6—C5—C10119.67 (15)N3—C12—N2117.48 (14)
C11—N1—N2—C12−171.55 (13)C8—C9—C10—C51.2 (2)
C10—C1—C2—O1179.81 (14)C8—C9—C10—C1−179.55 (15)
C11—C1—C2—O1−2.4 (2)C6—C5—C10—C9−0.6 (2)
C10—C1—C2—C3−1.4 (2)C4—C5—C10—C9179.18 (14)
C11—C1—C2—C3176.35 (15)C6—C5—C10—C1−179.86 (14)
O1—C2—C3—C4179.62 (15)C4—C5—C10—C1−0.1 (2)
C1—C2—C3—C40.8 (3)C2—C1—C10—C9−178.19 (14)
C2—C3—C4—C50.2 (3)C11—C1—C10—C94.1 (2)
C3—C4—C5—C6179.19 (15)C2—C1—C10—C51.1 (2)
C3—C4—C5—C10−0.5 (2)C11—C1—C10—C5−176.66 (13)
C4—C5—C6—C7179.81 (15)N2—N1—C11—C1−175.06 (13)
C10—C5—C6—C7−0.5 (2)C2—C1—C11—N112.1 (2)
C5—C6—C7—C80.9 (3)C10—C1—C11—N1−170.23 (13)
C6—C7—C8—C9−0.3 (3)N1—N2—C12—O2−172.55 (13)
C7—C8—C9—C10−0.8 (3)N1—N2—C12—N36.8 (2)
D—H···AD—HH···AD···AD—H···A
O1—H1O···N10.841.822.5562 (17)146
N2—H2A···O2i0.881.982.8290 (17)161
N3—H3A···O1ii0.882.102.9762 (18)171
N3—H3B···O2iii0.882.583.0618 (18)116
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1O⋯N10.841.822.5562 (17)146
N2—H2A⋯O2i0.881.982.8290 (17)161
N3—H3A⋯O1ii0.882.102.9762 (18)171
N3—H3B⋯O2iii0.882.583.0618 (18)116

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

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Authors:  Heloisa Beraldo; Dinorah Gambino
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Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

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Authors:  Ozlem Oter; Kadriye Ertekin; Cumhur Kirilmis; Murat Koca
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