Literature DB >> 21583889

5-(4-Bromo-phen-yl)-1,2,3,4-tetra-hydro-benzo[a]phenanthridine.

Heng-Shen Xie1, Ai-Ling Zhang, Ling Su.   

Abstract

The title compound, C(23)H(18)BrN, was synthesized by the reaction of 4-bromo-benzaldehyde, naphthalen-2-amine and cyclo-hexa-none in tetra-hydro-furan, catalyzed by iodine. The saturated six-membered ring adopts a half-chair conformation, and the four vicinal rings form a helical conformation, which results in a significant deviation from planarity for the pyridine ring. In the crystal, a weak C-H⋯π inter-action occurs, leading to inversion dimers.

Entities:  

Year:  2009        PMID: 21583889      PMCID: PMC2977753          DOI: 10.1107/S1600536809013713

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background on phenanthridine derivatives, see: Clement et al. (2005 ▶); Hazeldine et al. (2005 ▶); Kock et al. (2005 ▶); Lu et al. (2004 ▶); Vanquelef et al. (2004 ▶); Watanabe et al. (2003 ▶).

Experimental

Crystal data

C23H18BrN M = 388.29 Triclinic, a = 5.660 (3) Å b = 11.596 (6) Å c = 13.869 (6) Å α = 78.48 (3)° β = 78.30 (3)° γ = 85.15 (3)° V = 872.5 (8) Å3 Z = 2 Mo Kα radiation μ = 2.36 mm−1 T = 296 K 0.46 × 0.22 × 0.15 mm

Data collection

Bruker SMART CCD diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.365, T max = 0.593 (expected range = 0.432–0.702) 11744 measured reflections 3826 independent reflections 2174 reflections with I > 2σ(I) R int = 0.041

Refinement

R[F 2 > 2σ(F 2)] = 0.042 wR(F 2) = 0.164 S = 1.14 3826 reflections 226 parameters H-atom parameters constrained Δρmax = 0.94 e Å−3 Δρmin = −1.05 e Å−3 Data collection: SMART (Bruker, 2001 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809013713/hb2942sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809013713/hb2942Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H18BrNZ = 2
Mr = 388.29F(000) = 396
Triclinic, P1Dx = 1.478 Mg m3
Hall symbol: -P 1Melting point = 491–493 K
a = 5.660 (3) ÅMo Kα radiation, λ = 0.71073 Å
b = 11.596 (6) ÅCell parameters from 3260 reflections
c = 13.869 (6) Åθ = 2.6–26.1°
α = 78.48 (3)°µ = 2.36 mm1
β = 78.30 (3)°T = 296 K
γ = 85.15 (3)°Block, colourless
V = 872.5 (8) Å30.46 × 0.22 × 0.15 mm
Bruker SMART CCD diffractometer3826 independent reflections
Radiation source: fine-focus sealed tube2174 reflections with I > 2σ(I)
graphiteRint = 0.041
ω scansθmax = 27.6°, θmin = 1.5°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −7→7
Tmin = 0.365, Tmax = 0.593k = −13→15
11744 measured reflectionsl = −18→18
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.042Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.164H-atom parameters constrained
S = 1.14w = 1/[σ2(Fo2) + (0.082P)2 + 0.0233P] where P = (Fo2 + 2Fc2)/3
3826 reflections(Δ/σ)max = 0.001
226 parametersΔρmax = 0.94 e Å3
0 restraintsΔρmin = −1.05 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Br10.54047 (10)−0.03144 (4)0.75111 (3)0.0876 (3)
N10.2434 (6)0.4250 (3)0.39876 (17)0.0451 (7)
C10.4456 (7)0.3594 (3)0.3874 (2)0.0416 (8)
C20.6195 (7)0.3727 (3)0.2984 (2)0.0415 (8)
C30.5838 (6)0.4649 (3)0.2203 (2)0.0406 (8)
C40.3867 (6)0.5467 (3)0.23571 (19)0.0392 (8)
C50.2104 (6)0.5181 (3)0.32479 (19)0.0401 (8)
C6−0.0130 (7)0.5835 (3)0.3388 (2)0.0480 (9)
H6A−0.12730.56090.39670.058*
C7−0.0644 (7)0.6779 (3)0.2703 (2)0.0478 (9)
H7A−0.21650.71590.27880.057*
C80.1163 (7)0.7192 (3)0.1846 (2)0.0454 (9)
C90.0690 (8)0.8271 (3)0.1212 (2)0.0558 (10)
H9A−0.08240.86560.13170.067*
C100.2477 (8)0.8748 (3)0.0442 (3)0.0571 (11)
H10B0.21640.94460.00150.068*
C110.4733 (8)0.8188 (4)0.0305 (2)0.0582 (11)
H11B0.59520.8525−0.02030.070*
C120.5202 (7)0.7137 (3)0.0910 (2)0.0486 (9)
H12A0.67440.67820.08050.058*
C130.3405 (7)0.6580 (3)0.1688 (2)0.0420 (9)
C140.7466 (7)0.4650 (3)0.1191 (2)0.0507 (9)
H14C0.65660.49760.06660.061*
H14D0.88050.51490.11210.061*
C150.8432 (9)0.3429 (4)0.1069 (2)0.0651 (12)
H15C0.94450.34550.04110.078*
H15D0.71040.29280.11240.078*
C160.9891 (9)0.2926 (5)0.1872 (3)0.0720 (13)
H16C1.05590.21490.17810.086*
H16D1.12210.34270.18140.086*
C170.8312 (7)0.2847 (4)0.2897 (2)0.0514 (9)
H17A0.76990.20620.31050.062*
H17B0.93120.29420.33650.062*
C180.4726 (6)0.2632 (3)0.47485 (19)0.0424 (8)
C190.6498 (7)0.2655 (4)0.5296 (2)0.0536 (10)
H19A0.75550.32680.51140.064*
C200.6714 (8)0.1771 (4)0.6116 (2)0.0575 (11)
H20B0.79320.17750.64760.069*
C210.5097 (7)0.0887 (3)0.6387 (2)0.0491 (9)
C220.3329 (8)0.0850 (3)0.5860 (2)0.0546 (10)
H22A0.22600.02420.60480.066*
C230.3150 (7)0.1734 (3)0.5038 (2)0.0498 (10)
H23B0.19420.17180.46760.060*
U11U22U33U12U13U23
Br10.1254 (6)0.0660 (4)0.0680 (3)−0.0038 (3)−0.0449 (3)0.0218 (2)
N10.048 (2)0.0464 (18)0.0367 (11)−0.0030 (16)−0.0065 (11)0.0014 (11)
C10.048 (2)0.0384 (19)0.0381 (13)−0.0051 (18)−0.0127 (13)−0.0011 (12)
C20.046 (2)0.0373 (18)0.0410 (13)−0.0039 (17)−0.0133 (14)−0.0019 (12)
C30.047 (2)0.0366 (19)0.0374 (12)−0.0069 (17)−0.0098 (13)−0.0003 (12)
C40.042 (2)0.0394 (19)0.0371 (12)−0.0066 (17)−0.0120 (13)−0.0022 (12)
C50.042 (2)0.0390 (19)0.0375 (13)−0.0016 (17)−0.0085 (13)−0.0034 (12)
C60.049 (3)0.048 (2)0.0432 (14)−0.0004 (19)−0.0041 (14)−0.0046 (14)
C70.044 (2)0.043 (2)0.0577 (17)0.0109 (18)−0.0132 (15)−0.0149 (15)
C80.051 (3)0.042 (2)0.0450 (14)−0.0058 (19)−0.0165 (15)−0.0041 (13)
C90.062 (3)0.046 (2)0.0621 (18)0.004 (2)−0.0264 (19)−0.0037 (16)
C100.067 (3)0.042 (2)0.0589 (18)0.000 (2)−0.0223 (19)0.0058 (16)
C110.071 (3)0.049 (2)0.0491 (16)−0.011 (2)−0.0124 (17)0.0093 (15)
C120.049 (2)0.046 (2)0.0462 (15)−0.0039 (18)−0.0072 (15)0.0003 (14)
C130.050 (2)0.0373 (19)0.0398 (13)−0.0059 (18)−0.0155 (14)−0.0015 (12)
C140.057 (3)0.052 (2)0.0376 (13)−0.0010 (19)−0.0037 (14)−0.0001 (13)
C150.079 (3)0.061 (3)0.0465 (16)0.005 (2)0.0033 (17)−0.0091 (16)
C160.067 (3)0.067 (3)0.067 (2)0.022 (3)−0.001 (2)0.000 (2)
C170.051 (3)0.050 (2)0.0490 (15)0.0011 (19)−0.0090 (15)−0.0016 (15)
C180.045 (2)0.043 (2)0.0351 (12)−0.0014 (17)−0.0053 (12)−0.0004 (12)
C190.053 (3)0.059 (2)0.0483 (15)−0.014 (2)−0.0154 (15)0.0024 (15)
C200.062 (3)0.067 (3)0.0447 (15)−0.006 (2)−0.0224 (16)−0.0004 (16)
C210.057 (2)0.044 (2)0.0434 (14)0.0040 (18)−0.0151 (15)0.0017 (14)
C220.062 (3)0.042 (2)0.0572 (16)−0.008 (2)−0.0179 (17)0.0056 (15)
C230.054 (3)0.046 (2)0.0487 (14)−0.0049 (19)−0.0195 (15)0.0033 (14)
Br1—C211.899 (3)C12—C131.416 (5)
N1—C11.320 (5)C12—H12A0.9300
N1—C51.362 (4)C14—C151.504 (6)
C1—C21.404 (5)C14—H14C0.9700
C1—C181.498 (4)C14—H14D0.9700
C2—C31.396 (4)C15—C161.515 (6)
C2—C171.508 (6)C15—H15C0.9700
C3—C41.413 (5)C15—H15D0.9700
C3—C141.514 (5)C16—C171.508 (5)
C4—C51.423 (4)C16—H16C0.9700
C4—C131.469 (4)C16—H16D0.9700
C5—C61.417 (5)C17—H17A0.9700
C6—C71.353 (5)C17—H17B0.9700
C6—H6A0.9300C18—C231.373 (5)
C7—C81.432 (5)C18—C191.380 (4)
C7—H7A0.9300C19—C201.389 (5)
C8—C131.400 (5)C19—H19A0.9300
C8—C91.418 (5)C20—C211.376 (5)
C9—C101.374 (6)C20—H20B0.9300
C9—H9A0.9300C21—C221.361 (5)
C10—C111.378 (6)C22—C231.387 (4)
C10—H10B0.9300C22—H22A0.9300
C11—C121.373 (5)C23—H23B0.9300
C11—H11B0.9300
C1—N1—C5118.9 (3)C15—C14—H14C109.3
N1—C1—C2123.4 (3)C3—C14—H14C109.3
N1—C1—C18115.2 (3)C15—C14—H14D109.3
C2—C1—C18121.3 (3)C3—C14—H14D109.3
C3—C2—C1118.2 (4)H14C—C14—H14D108.0
C3—C2—C17122.8 (3)C14—C15—C16109.5 (3)
C1—C2—C17119.0 (3)C14—C15—H15C109.8
C2—C3—C4119.4 (3)C16—C15—H15C109.8
C2—C3—C14117.4 (3)C14—C15—H15D109.8
C4—C3—C14122.9 (3)C16—C15—H15D109.8
C3—C4—C5117.0 (3)H15C—C15—H15D108.2
C3—C4—C13127.2 (3)C17—C16—C15110.2 (4)
C5—C4—C13115.9 (3)C17—C16—H16C109.6
N1—C5—C6116.8 (3)C15—C16—H16C109.6
N1—C5—C4122.1 (3)C17—C16—H16D109.6
C6—C5—C4121.1 (3)C15—C16—H16D109.6
C7—C6—C5121.7 (3)H16C—C16—H16D108.1
C7—C6—H6A119.2C2—C17—C16116.1 (3)
C5—C6—H6A119.2C2—C17—H17A108.3
C6—C7—C8119.8 (4)C16—C17—H17A108.3
C6—C7—H7A120.1C2—C17—H17B108.3
C8—C7—H7A120.1C16—C17—H17B108.3
C13—C8—C9121.3 (3)H17A—C17—H17B107.4
C13—C8—C7120.1 (3)C23—C18—C19119.0 (3)
C9—C8—C7118.5 (4)C23—C18—C1120.2 (3)
C10—C9—C8119.7 (4)C19—C18—C1120.8 (3)
C10—C9—H9A120.1C18—C19—C20120.5 (3)
C8—C9—H9A120.1C18—C19—H19A119.8
C9—C10—C11119.8 (3)C20—C19—H19A119.8
C9—C10—H10B120.1C21—C20—C19118.9 (3)
C11—C10—H10B120.1C21—C20—H20B120.6
C12—C11—C10120.8 (4)C19—C20—H20B120.6
C12—C11—H11B119.6C22—C21—C20121.6 (3)
C10—C11—H11B119.6C22—C21—Br1119.9 (3)
C11—C12—C13121.9 (4)C20—C21—Br1118.5 (2)
C11—C12—H12A119.1C21—C22—C23118.8 (3)
C13—C12—H12A119.1C21—C22—H22A120.6
C8—C13—C12116.3 (3)C23—C22—H22A120.6
C8—C13—C4120.5 (3)C18—C23—C22121.2 (3)
C12—C13—C4123.0 (3)C18—C23—H23B119.4
C15—C14—C3111.6 (3)C22—C23—H23B119.4
C5—N1—C1—C2−6.8 (4)C7—C8—C13—C12−171.1 (3)
C5—N1—C1—C18176.7 (3)C9—C8—C13—C4179.6 (3)
N1—C1—C2—C34.2 (5)C7—C8—C13—C44.4 (4)
C18—C1—C2—C3−179.5 (3)C11—C12—C13—C8−3.6 (5)
N1—C1—C2—C17−173.5 (3)C11—C12—C13—C4−178.9 (3)
C18—C1—C2—C172.8 (4)C3—C4—C13—C8167.9 (3)
C1—C2—C3—C45.1 (4)C5—C4—C13—C8−10.9 (4)
C17—C2—C3—C4−177.3 (3)C3—C4—C13—C12−16.9 (5)
C1—C2—C3—C14−169.1 (3)C5—C4—C13—C12164.3 (3)
C17—C2—C3—C148.5 (5)C2—C3—C14—C1525.2 (4)
C2—C3—C4—C5−11.0 (4)C4—C3—C14—C15−148.8 (3)
C14—C3—C4—C5162.9 (3)C3—C14—C15—C16−60.4 (5)
C2—C3—C4—C13170.1 (3)C14—C15—C16—C1761.1 (5)
C14—C3—C4—C13−16.0 (5)C3—C2—C17—C16−6.9 (5)
C1—N1—C5—C6177.9 (3)C1—C2—C17—C16170.7 (3)
C1—N1—C5—C40.1 (4)C15—C16—C17—C2−27.8 (6)
C3—C4—C5—N18.7 (4)N1—C1—C18—C2363.7 (4)
C13—C4—C5—N1−172.3 (3)C2—C1—C18—C23−113.0 (4)
C3—C4—C5—C6−169.0 (3)N1—C1—C18—C19−114.0 (4)
C13—C4—C5—C610.0 (4)C2—C1—C18—C1969.3 (5)
N1—C5—C6—C7179.7 (3)C23—C18—C19—C201.2 (6)
C4—C5—C6—C7−2.5 (5)C1—C18—C19—C20179.0 (3)
C5—C6—C7—C8−4.7 (5)C18—C19—C20—C21−1.5 (6)
C6—C7—C8—C133.6 (5)C19—C20—C21—C221.3 (6)
C6—C7—C8—C9−171.7 (3)C19—C20—C21—Br1−179.8 (3)
C13—C8—C9—C10−1.6 (5)C20—C21—C22—C23−0.7 (6)
C7—C8—C9—C10173.6 (3)Br1—C21—C22—C23−179.6 (3)
C8—C9—C10—C11−1.5 (5)C19—C18—C23—C22−0.7 (6)
C9—C10—C11—C122.0 (6)C1—C18—C23—C22−178.4 (3)
C10—C11—C12—C130.6 (5)C21—C22—C23—C180.4 (6)
C9—C8—C13—C124.0 (4)
D—H···AD—HH···AD···AD—H···A
C7—H7A···Cgi0.932.883.620 (14)137
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
C7—H7ACgi0.932.883.620 (14)137

Symmetry code: (i) . Cg is the centroid of the 4-bromophenyl ring.

  6 in total

1.  A two-step synthesis of cytostatically active benzo[c]phenanthridine derivatives.

Authors:  Bernd Clement; Matthias Weide; Ulrich Wolschendorf; Ilka Kock
Journal:  Angew Chem Int Ed Engl       Date:  2005-01-14       Impact factor: 15.336

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Synthesis and antiviral effect against herpes simplex type 1 of 12-substituted benzo[c]phenanthridinium salts.

Authors:  Enguerran Vanquelef; Maryvonne Amoros; Joel Boustie; Michael A Lynch; Roger D Waigh; Olivier Duval
Journal:  J Enzyme Inhib Med Chem       Date:  2004-12       Impact factor: 5.051

4.  Synthesis and biological evaluation of 11-substituted 6-aminobenzo[c]phenanthridine derivatives, a new class of antitumor agents.

Authors:  Ilka Kock; Dieter Heber; Matthias Weide; Ulrich Wolschendorf; Bernd Clement
Journal:  J Med Chem       Date:  2005-04-21       Impact factor: 7.446

5.  Part 3: synthesis and biological evaluation of some analogs of the antitumor agents, 2-{4-[(7-chloro-2-quinoxalinyl)oxy]phenoxy}propionic acid, and 2-{4-[(7-bromo-2-quinolinyl)oxy]phenoxy}propionic acid.

Authors:  Stuart T Hazeldine; Lisa Polin; Juiwanna Kushner; Kathryn White; Thomas H Corbett; Jason Biehl; Jerome P Horwitz
Journal:  Bioorg Med Chem       Date:  2005-02-15       Impact factor: 3.641

6.  Total synthesis of 12-methoxydihydrochelerythrine and anti-tumour activity of its quaternary base: toward an efficient synthetic route for 12-alkoxybenzo[c]phenanthridine bases via naphthoquinone monooxime from 2-benzofuranyl-1-tetralone derivative.

Authors:  Toshiko Watanabe; Yoshiaki Ohashi; Rie Yoshino; Naoko Komano; Miyuki Eguchi; Sakiko Maruyama; Tsutomu Ishikawa
Journal:  Org Biomol Chem       Date:  2003-09-07       Impact factor: 3.876

  6 in total
  1 in total

1.  3-(4-Chloro-phen-yl)-1-(4-nitro-phen-yl)benzo[f]quinoline.

Authors:  Shu-Liang Wang; Qing Li; Xiang-Shan Wang; Shu-Jiang Tu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-12
  1 in total

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