Literature DB >> 21583842

N-[(3-Phenylsulfanyl-1-phenylsulfonyl-1H-indol-2-yl)methyl]acetamide.

S Thenmozhi, A Subbiahpandi, V Dhayalan, A K Mohanakrishnan.   

Abstract

In the title compound, C(23)H(20)N(2)O(3)S(2), the phenylsulfonyl ring and phenylthio ring make dihedral angles of 66.5 (7) and 81.2 (6)°, respectively, with the indole unit. In the crystal, mol-ecules are linked into centrosymmetric dimers via pairs of N-H⋯O hydrogen bonds with graph-set motif R(2) (2)(14). The crystal structure is further stabilized by weak inter-molecular C-H⋯O and very weak C-H⋯π inter-actions.

Entities:  

Year:  2009        PMID: 21583842      PMCID: PMC2977706          DOI: 10.1107/S1600536809012525

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of indole derivatives, see: Singh et al. (2000 ▶); Andreani et al. (2001 ▶); Quetin-Leclercq (1994 ▶); Mukhopadhyay et al. (1981 ▶); Taylor et al. (1999 ▶); Williams et al. (1993 ▶); Sivaraman et al. (1996 ▶). For a related structure, see: Ravishankar et al. (2005 ▶).

Experimental

Crystal data

C23H20N2O3S2 M = 436.53 Triclinic, a = 8.8129 (2) Å b = 10.8880 (3) Å c = 11.3711 (3) Å α = 86.698 (1)° β = 76.494 (1)° γ = 83.317 (1)° V = 1053.21 (5) Å3 Z = 2 Mo Kα radiation μ = 0.28 mm−1 T = 293 K 0.21 × 0.19 × 0.17 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.943, T max = 0.953 28160 measured reflections 7167 independent reflections 5294 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.121 S = 0.98 7167 reflections 272 parameters H-atom parameters constrained Δρmax = 0.33 e Å−3 Δρmin = −0.39 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia, 1997 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809012525/bt2922sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012525/bt2922Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C23H20N2O3S2Z = 2
Mr = 436.53F(000) = 456
Triclinic, P1Dx = 1.377 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 8.8129 (2) ÅCell parameters from 7167 reflections
b = 10.8880 (3) Åθ = 2.4–31.9°
c = 11.3711 (3) ŵ = 0.28 mm1
α = 86.698 (1)°T = 293 K
β = 76.494 (1)°Block, colourless
γ = 83.317 (1)°0.21 × 0.19 × 0.17 mm
V = 1053.21 (5) Å3
Bruker Kappa APEXII CCD diffractometer7167 independent reflections
Radiation source: fine-focus sealed tube5294 reflections with I > 2σ(I)
graphiteRint = 0.026
ω scansθmax = 31.9°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −13→13
Tmin = 0.943, Tmax = 0.953k = −16→16
28160 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.121H-atom parameters constrained
S = 0.98w = 1/[σ2(Fo2) + (0.0595P)2 + 0.2774P] where P = (Fo2 + 2Fc2)/3
7167 reflections(Δ/σ)max = 0.005
272 parametersΔρmax = 0.33 e Å3
0 restraintsΔρmin = −0.39 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.80217 (15)0.18662 (12)0.83970 (11)0.0347 (3)
C20.79544 (18)0.07935 (15)0.91125 (14)0.0470 (3)
H20.85320.06440.97030.056*
C30.6993 (2)−0.00414 (16)0.89092 (17)0.0567 (4)
H30.6929−0.07750.93700.068*
C40.6116 (2)0.01768 (16)0.80390 (17)0.0561 (4)
H40.5467−0.04040.79370.067*
C50.61930 (18)0.12411 (15)0.73246 (14)0.0465 (3)
H50.56110.13850.67360.056*
C60.71616 (15)0.20927 (12)0.75069 (11)0.0348 (3)
C70.74318 (15)0.33121 (12)0.69884 (11)0.0338 (3)
C80.83792 (15)0.38163 (12)0.75660 (11)0.0329 (2)
C90.87341 (16)0.51288 (13)0.75136 (13)0.0393 (3)
H9A0.98540.51520.74150.047*
H9B0.84270.55600.68220.047*
C100.64041 (17)0.62259 (15)0.87510 (15)0.0463 (3)
C110.5609 (2)0.66919 (19)0.99829 (18)0.0619 (5)
H11A0.49480.74430.99010.093*
H11B0.63870.68501.04050.093*
H11C0.49820.60811.04300.093*
C121.17375 (14)0.22315 (13)0.72453 (12)0.0355 (3)
C131.23409 (17)0.30613 (15)0.63391 (14)0.0458 (3)
H131.22220.39040.64770.055*
C141.31247 (19)0.26126 (19)0.52229 (16)0.0560 (4)
H141.35370.31570.46010.067*
C151.3295 (2)0.1370 (2)0.50313 (16)0.0602 (5)
H151.38210.10750.42770.072*
C161.2700 (2)0.05551 (18)0.59387 (19)0.0656 (5)
H161.2830−0.02880.57980.079*
C171.19143 (19)0.09758 (15)0.70519 (16)0.0517 (4)
H171.15060.04250.76690.062*
C180.76928 (15)0.32193 (12)0.45609 (11)0.0336 (3)
C190.90885 (16)0.24822 (14)0.45385 (12)0.0417 (3)
H190.94840.23670.52320.050*
C200.98919 (19)0.19193 (16)0.34812 (14)0.0503 (4)
H201.08250.14180.34680.060*
C210.9327 (2)0.20926 (16)0.24488 (14)0.0512 (4)
H210.98820.17190.17380.061*
C220.7938 (2)0.28199 (17)0.24709 (13)0.0524 (4)
H220.75510.29340.17740.063*
C230.71127 (17)0.33808 (15)0.35210 (13)0.0440 (3)
H230.61690.38670.35330.053*
N10.87779 (12)0.29375 (10)0.84621 (9)0.0346 (2)
N20.78974 (13)0.57402 (11)0.86117 (11)0.0403 (3)
H2A0.83710.57920.91850.048*
O11.06998 (14)0.18125 (12)0.95384 (10)0.0559 (3)
O21.09978 (14)0.39630 (11)0.88318 (11)0.0552 (3)
O30.57273 (17)0.62503 (18)0.79379 (14)0.0910 (5)
S11.06294 (4)0.27656 (3)0.86411 (3)0.03906 (10)
S20.65950 (4)0.40353 (3)0.58434 (3)0.04266 (10)
U11U22U33U12U13U23
C10.0339 (6)0.0363 (7)0.0294 (6)0.0033 (5)−0.0017 (5)−0.0011 (5)
C20.0472 (8)0.0473 (8)0.0409 (8)0.0023 (6)−0.0049 (6)0.0087 (6)
C30.0589 (10)0.0442 (9)0.0590 (10)−0.0056 (7)−0.0003 (8)0.0117 (7)
C40.0557 (9)0.0456 (9)0.0646 (11)−0.0137 (7)−0.0041 (8)−0.0036 (8)
C50.0465 (8)0.0474 (8)0.0459 (8)−0.0054 (6)−0.0093 (6)−0.0084 (6)
C60.0363 (6)0.0365 (7)0.0288 (6)0.0022 (5)−0.0039 (5)−0.0048 (5)
C70.0373 (6)0.0350 (6)0.0270 (5)0.0056 (5)−0.0072 (5)−0.0034 (5)
C80.0341 (6)0.0346 (6)0.0268 (5)0.0043 (5)−0.0043 (4)−0.0025 (5)
C90.0388 (6)0.0359 (7)0.0403 (7)−0.0002 (5)−0.0049 (5)−0.0030 (5)
C100.0393 (7)0.0476 (8)0.0508 (8)0.0029 (6)−0.0097 (6)−0.0097 (7)
C110.0522 (9)0.0638 (11)0.0635 (11)0.0005 (8)0.0013 (8)−0.0246 (9)
C120.0307 (6)0.0404 (7)0.0362 (6)−0.0001 (5)−0.0105 (5)−0.0041 (5)
C130.0396 (7)0.0441 (8)0.0503 (8)−0.0011 (6)−0.0060 (6)0.0022 (6)
C140.0432 (8)0.0730 (12)0.0446 (8)−0.0027 (7)0.0002 (6)0.0076 (8)
C150.0448 (8)0.0834 (14)0.0490 (9)−0.0026 (8)−0.0006 (7)−0.0234 (9)
C160.0572 (10)0.0559 (11)0.0783 (13)−0.0077 (8)0.0028 (9)−0.0295 (10)
C170.0490 (8)0.0422 (8)0.0576 (9)−0.0052 (6)0.0015 (7)−0.0055 (7)
C180.0365 (6)0.0355 (6)0.0295 (6)−0.0043 (5)−0.0093 (5)0.0010 (5)
C190.0411 (7)0.0508 (8)0.0330 (6)0.0029 (6)−0.0113 (5)−0.0029 (6)
C200.0460 (8)0.0584 (10)0.0411 (8)0.0068 (7)−0.0043 (6)−0.0064 (7)
C210.0606 (9)0.0569 (10)0.0322 (7)−0.0065 (7)−0.0015 (6)−0.0070 (6)
C220.0645 (10)0.0649 (10)0.0310 (7)−0.0076 (8)−0.0170 (7)−0.0010 (7)
C230.0449 (7)0.0534 (9)0.0355 (7)−0.0003 (6)−0.0163 (6)0.0022 (6)
N10.0343 (5)0.0400 (6)0.0282 (5)0.0025 (4)−0.0076 (4)−0.0017 (4)
N20.0391 (6)0.0397 (6)0.0439 (6)0.0019 (5)−0.0137 (5)−0.0120 (5)
O10.0594 (7)0.0743 (8)0.0344 (5)0.0054 (6)−0.0204 (5)0.0089 (5)
O20.0576 (6)0.0579 (7)0.0580 (7)−0.0021 (5)−0.0261 (5)−0.0220 (5)
O30.0563 (8)0.1470 (15)0.0704 (9)0.0362 (9)−0.0318 (7)−0.0335 (9)
S10.04034 (17)0.0485 (2)0.03049 (16)0.00304 (14)−0.01514 (13)−0.00580 (13)
S20.04688 (19)0.0454 (2)0.03417 (17)0.01400 (14)−0.01465 (14)−0.00459 (14)
C1—C21.3834 (19)C12—S11.7496 (13)
C1—C61.3949 (18)C13—C141.382 (2)
C1—N11.4226 (18)C13—H130.9300
C2—C31.376 (2)C14—C151.368 (3)
C2—H20.9300C14—H140.9300
C3—C41.385 (3)C15—C161.370 (3)
C3—H30.9300C15—H150.9300
C4—C51.375 (2)C16—C171.369 (2)
C4—H40.9300C16—H160.9300
C5—C61.386 (2)C17—H170.9300
C5—H50.9300C18—C191.3840 (18)
C6—C71.4439 (19)C18—C231.3885 (17)
C7—C81.3543 (18)C18—S21.7727 (13)
C7—S21.7477 (12)C19—C201.382 (2)
C8—N11.4332 (16)C19—H190.9300
C8—C91.4930 (19)C20—C211.374 (2)
C9—N21.4482 (17)C20—H200.9300
C9—H9A0.9700C21—C221.375 (2)
C9—H9B0.9700C21—H210.9300
C10—O31.2093 (19)C22—C231.379 (2)
C10—N21.3368 (18)C22—H220.9300
C10—C111.500 (2)C23—H230.9300
C11—H11A0.9600N1—S11.6789 (11)
C11—H11B0.9600N2—H2A0.8600
C11—H11C0.9600O1—S11.4193 (11)
C12—C131.382 (2)O2—S11.4198 (12)
C12—C171.382 (2)
C2—C1—C6121.75 (14)C14—C13—H13120.7
C2—C1—N1130.00 (13)C15—C14—C13120.14 (16)
C6—C1—N1108.02 (11)C15—C14—H14119.9
C3—C2—C1116.88 (15)C13—C14—H14119.9
C3—C2—H2121.6C14—C15—C16120.71 (16)
C1—C2—H2121.6C14—C15—H15119.6
C2—C3—C4122.07 (15)C16—C15—H15119.6
C2—C3—H3119.0C17—C16—C15120.32 (17)
C4—C3—H3119.0C17—C16—H16119.8
C5—C4—C3120.89 (16)C15—C16—H16119.8
C5—C4—H4119.6C16—C17—C12119.01 (16)
C3—C4—H4119.6C16—C17—H17120.5
C4—C5—C6118.11 (15)C12—C17—H17120.5
C4—C5—H5120.9C19—C18—C23119.60 (13)
C6—C5—H5120.9C19—C18—S2123.85 (10)
C5—C6—C1120.29 (13)C23—C18—S2116.52 (10)
C5—C6—C7132.35 (13)C20—C19—C18119.66 (13)
C1—C6—C7107.20 (12)C20—C19—H19120.2
C8—C7—C6109.04 (11)C18—C19—H19120.2
C8—C7—S2125.89 (11)C21—C20—C19120.68 (15)
C6—C7—S2125.02 (10)C21—C20—H20119.7
C7—C8—N1108.48 (11)C19—C20—H20119.7
C7—C8—C9128.32 (12)C20—C21—C22119.72 (14)
N1—C8—C9122.13 (11)C20—C21—H21120.1
N2—C9—C8110.29 (11)C22—C21—H21120.1
N2—C9—H9A109.6C21—C22—C23120.40 (14)
C8—C9—H9A109.6C21—C22—H22119.8
N2—C9—H9B109.6C23—C22—H22119.8
C8—C9—H9B109.6C22—C23—C18119.92 (13)
H9A—C9—H9B108.1C22—C23—H23120.0
O3—C10—N2121.55 (15)C18—C23—H23120.0
O3—C10—C11122.30 (15)C1—N1—C8107.23 (10)
N2—C10—C11116.11 (14)C1—N1—S1119.17 (9)
C10—C11—H11A109.5C8—N1—S1118.64 (9)
C10—C11—H11B109.5C10—N2—C9121.31 (12)
H11A—C11—H11B109.5C10—N2—H2A119.3
C10—C11—H11C109.5C9—N2—H2A119.3
H11A—C11—H11C109.5O1—S1—O2119.66 (7)
H11B—C11—H11C109.5O1—S1—N1106.41 (7)
C13—C12—C17121.18 (14)O2—S1—N1106.61 (6)
C13—C12—S1120.19 (11)O1—S1—C12108.97 (7)
C17—C12—S1118.52 (12)O2—S1—C12110.17 (7)
C12—C13—C14118.64 (15)N1—S1—C12103.77 (6)
C12—C13—H13120.7C7—S2—C18101.32 (6)
C6—C1—C2—C3−0.2 (2)C19—C20—C21—C22−0.9 (3)
N1—C1—C2—C3173.51 (14)C20—C21—C22—C230.3 (3)
C1—C2—C3—C4−0.6 (2)C21—C22—C23—C180.5 (2)
C2—C3—C4—C51.0 (3)C19—C18—C23—C22−0.8 (2)
C3—C4—C5—C6−0.5 (2)S2—C18—C23—C22177.16 (12)
C4—C5—C6—C1−0.3 (2)C2—C1—N1—C8−175.59 (13)
C4—C5—C6—C7−175.17 (14)C6—C1—N1—C8−1.19 (13)
C2—C1—C6—C50.7 (2)C2—C1—N1—S146.01 (18)
N1—C1—C6—C5−174.30 (12)C6—C1—N1—S1−139.59 (9)
C2—C1—C6—C7176.72 (12)C7—C8—N1—C10.11 (13)
N1—C1—C6—C71.76 (14)C9—C8—N1—C1169.22 (11)
C5—C6—C7—C8173.66 (14)C7—C8—N1—S1138.76 (10)
C1—C6—C7—C8−1.72 (14)C9—C8—N1—S1−52.12 (14)
C5—C6—C7—S2−3.8 (2)O3—C10—N2—C9−5.2 (3)
C1—C6—C7—S2−179.22 (9)C11—C10—N2—C9172.65 (14)
C6—C7—C8—N10.98 (14)C8—C9—N2—C10−83.42 (16)
S2—C7—C8—N1178.45 (9)C1—N1—S1—O1−43.85 (11)
C6—C7—C8—C9−167.25 (12)C8—N1—S1—O1−177.59 (10)
S2—C7—C8—C910.2 (2)C1—N1—S1—O2−172.62 (10)
C7—C8—C9—N2104.47 (15)C8—N1—S1—O253.64 (11)
N1—C8—C9—N2−62.33 (15)C1—N1—S1—C1271.05 (10)
C17—C12—C13—C140.4 (2)C8—N1—S1—C12−62.69 (11)
S1—C12—C13—C14−175.91 (12)C13—C12—S1—O1−156.18 (11)
C12—C13—C14—C15−0.2 (2)C17—C12—S1—O127.46 (13)
C13—C14—C15—C16−0.2 (3)C13—C12—S1—O2−23.05 (13)
C14—C15—C16—C170.4 (3)C17—C12—S1—O2160.59 (12)
C15—C16—C17—C12−0.2 (3)C13—C12—S1—N190.75 (12)
C13—C12—C17—C16−0.2 (2)C17—C12—S1—N1−85.61 (12)
S1—C12—C17—C16176.18 (14)C8—C7—S2—C18108.39 (12)
C23—C18—C19—C200.2 (2)C6—C7—S2—C18−74.53 (12)
S2—C18—C19—C20−177.54 (12)C19—C18—S2—C7−15.37 (14)
C18—C19—C20—C210.6 (2)C23—C18—S2—C7166.79 (11)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O2i0.862.483.3179 (15)165
C21—H21···O1ii0.932.443.2666 (18)149
C5—H5···Cg3iii0.932.943.7634 (18)149
C9—H9A···Cg4iv0.972.953.5792 (16)124
C11—H11A···Cg2v0.962.913.5974 (21)129
C16—H16···Cg4vi0.932.953.7453 (21)145
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2A⋯O2i0.862.483.3179 (15)165
C21—H21⋯O1ii0.932.443.2666 (18)149
C5—H5⋯Cg3iii0.932.943.7634 (18)149
C9—H9ACg4iv0.972.953.5792 (16)124
C11—H11ACg2v0.962.913.5974 (21)129
C16—H16⋯Cg4vi0.932.953.7453 (21)145

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) ; (v) ; (vi) . Cg2, Cg3 and Cg4 are the centroids of the C1–C6, C12–C17 and C18–C23 rings, respectively.

  8 in total

1.  Antifungal activity of venenatine, an indole alkaloid isolated from Alstonia venenata.

Authors:  U P Singh; B K Sarma; P K Mishra; A B Ray
Journal:  Folia Microbiol (Praha)       Date:  2000       Impact factor: 2.099

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

Review 3.  [Potential anticancer and antiparasitic indole alkaloids].

Authors:  J Quetin-Leclercq
Journal:  J Pharm Belg       Date:  1994 May-Jun

4.  Pyrido [1,2a] indole derivatives identified as novel non-nucleoside reverse transcriptase inhibitors of human immunodeficiency virus type 1.

Authors:  D L Taylor; P S Ahmed; P Chambers; A S Tyms; J Bedard; J Duchaine; G Falardeau; J F Lavallée; W Brown; R F Rando; T Bowlin
Journal:  Antivir Chem Chemother       Date:  1999-03

5.  Synthesis and antitumor activity of substituted 3-(5-imidazo[2,1-b]thiazolylmethylene)-2-indolinones.

Authors:  A Andreani; M Granaiola; A Leoni; A Locatelli; R Morigi; M Rambaldi; G Giorgi; L Salvini; V Garaliene
Journal:  Anticancer Drug Des       Date:  2001 Apr-Jun

6.  5-chloro-3-(phenylsulfonyl)indole-2-carboxamide: a novel, non-nucleoside inhibitor of HIV-1 reverse transcriptase.

Authors:  T M Williams; T M Ciccarone; S C MacTough; C S Rooney; S K Balani; J H Condra; E A Emini; M E Goldman; W J Greenlee; L R Kauffman
Journal:  J Med Chem       Date:  1993-04-30       Impact factor: 7.446

7.  Anticancer indole alkaloids of Rhazya stricta.

Authors:  S Mukhopadhyay; G A Handy; S Funayama; G A Cordell
Journal:  J Nat Prod       Date:  1981 Nov-Dec       Impact factor: 4.050

8.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  8 in total

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