Literature DB >> 21583829

Piperazinediium dioxamate.

S Murugavel, R Selvakumar, S Govindarajan, P S Kannan, A Subbiahpandi.   

Abstract

The title compound, C(4)H(12)N(2) (2+)·2C(2)H(2)NO(3) (-), contains a network of doubly protanated piperazinium cations (lying about centres of inversion) and dioxamate anions. The piperazinium dication adopts a typical chair conformation. The crystal structure is stabilized by cation-to-anion N-H⋯O and anion-to-anion N-H⋯O hydrogen bonds.

Entities:  

Year:  2009        PMID: 21583829      PMCID: PMC2977693          DOI: 10.1107/S1600536809012513

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Büyükgüngör & Odabaşoğlu (2008 ▶); Wilkinson & Harrison (2007 ▶). For biological applications of piperazines, see: Berkheij et al. (2005 ▶); Humle & Cherrier (1999 ▶). For the synthesis of a ligand with two piperazine arms, see: Bharathi et al. (2006 ▶). For the use of piperazine derivatives as buffers, see: Good et al. (1966 ▶). For the piperazine nucleus and its ability to bind to multiple receptors, see: Dinsmore & Beshore (2002 ▶).

Experimental

Crystal data

C4H12N2 2+·2C2H2NO3 − M = 264.25 Monoclinic, a = 6.4323 (4) Å b = 6.7681 (4) Å c = 13.0032 (7) Å β = 94.488 (2)° V = 564.35 (6) Å3 Z = 2 Mo Kα radiation μ = 0.13 mm−1 T = 293 K 0.24 × 0.22 × 0.16 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.969, T max = 0.979 9313 measured reflections 2606 independent reflections 2197 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.041 wR(F 2) = 0.119 S = 1.09 2606 reflections 82 parameters 3 restraints H-atom parameters constrained Δρmax = 0.36 e Å−3 Δρmin = −0.34 e Å−3 Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: APEX2 and SAINT (Bruker, 2004 ▶); data reduction: SAINT and XPREP (Bruker, 2004 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 (Farrugia (1997 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATON. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809012513/lx2097sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012513/lx2097Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H12N22+·2C2H2NO3F(000) = 280
Mr = 264.25Dx = 1.555 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 2743 reflections
a = 6.4323 (4) Åθ = 3.1–36.3°
b = 6.7681 (4) ŵ = 0.13 mm1
c = 13.0032 (7) ÅT = 293 K
β = 94.488 (2)°Block, colourless
V = 564.35 (6) Å30.24 × 0.22 × 0.16 mm
Z = 2
Bruker APEXII CCD diffractometer2606 independent reflections
Radiation source: fine-focus sealed tube2197 reflections with I > 2σ(I)
graphiteRint = 0.021
Detector resolution: 10.0 pixels mm-1θmax = 36.3°, θmin = 3.1°
ω scansh = −10→10
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)k = −11→10
Tmin = 0.969, Tmax = 0.979l = −20→9
9313 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.041Hydrogen site location: difference Fourier map
wR(F2) = 0.119H-atom parameters constrained
S = 1.09w = 1/[σ2(Fo2) + (0.0667P)2 + 0.0606P] where P = (Fo2 + 2Fc2)/3
2606 reflections(Δ/σ)max < 0.001
82 parametersΔρmax = 0.36 e Å3
3 restraintsΔρmin = −0.34 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
N20.08666 (10)0.95960 (10)0.40409 (4)0.02372 (13)
H2A0.17520.99000.35620.028*
H2B0.01610.85020.38300.028*
C3−0.06294 (12)1.12524 (12)0.41301 (5)0.02590 (15)
H3A−0.14361.14410.34750.031*
H3B0.01321.24620.42970.031*
C40.20790 (11)0.91851 (12)0.50401 (6)0.02572 (15)
H4A0.29381.03200.52400.031*
H4B0.29920.80640.49620.031*
O10.13426 (8)0.15896 (9)0.19612 (4)0.02683 (13)
O20.44704 (10)−0.03929 (12)0.30376 (4)0.03431 (16)
O30.28309 (12)0.09059 (12)0.05073 (4)0.03678 (17)
N10.61883 (11)−0.06196 (13)0.15969 (5)0.03142 (17)
H1A0.7247−0.11860.19170.038*
H1B0.6182−0.03870.09460.038*
C10.27471 (10)0.08954 (10)0.14582 (4)0.02114 (13)
C20.45721 (11)−0.01070 (11)0.21043 (5)0.02200 (14)
U11U22U33U12U13U23
N20.0244 (3)0.0285 (3)0.0190 (2)−0.0053 (2)0.00670 (19)−0.0034 (2)
C30.0285 (3)0.0280 (3)0.0214 (3)−0.0015 (3)0.0027 (2)0.0021 (2)
C40.0208 (3)0.0312 (4)0.0254 (3)0.0001 (2)0.0034 (2)−0.0022 (2)
O10.0230 (2)0.0337 (3)0.0242 (2)0.0066 (2)0.00426 (18)0.00091 (19)
O20.0304 (3)0.0553 (4)0.0179 (2)0.0129 (3)0.0059 (2)0.0084 (2)
O30.0432 (4)0.0502 (4)0.0168 (2)0.0188 (3)0.0017 (2)0.0017 (2)
N10.0291 (3)0.0460 (4)0.0200 (2)0.0156 (3)0.0067 (2)0.0051 (2)
C10.0232 (3)0.0222 (3)0.0181 (2)0.0024 (2)0.0014 (2)0.0006 (2)
C20.0225 (3)0.0261 (3)0.0178 (3)0.0038 (2)0.0039 (2)0.0019 (2)
N2—C31.4879 (11)C4—H4B0.9700
N2—C41.4883 (10)O1—C11.2478 (5)
N2—H2A0.9000O2—C21.2357 (8)
N2—H2B0.9000O3—C11.2419 (5)
C3—C4i1.5095 (10)N1—C21.3205 (9)
C3—H3A0.9700N1—H1A0.8600
C3—H3B0.9700N1—H1B0.8600
C4—C3i1.5095 (10)C1—O31.2419 (5)
C4—H4A0.9700C1—C21.5459 (10)
C3—N2—C4111.75 (6)N2—C4—H4B109.6
C3—N2—H2A109.3C3i—C4—H4B109.6
C4—N2—H2A109.3H4A—C4—H4B108.1
C3—N2—H2B109.3C2—N1—H1A120.0
C4—N2—H2B109.3C2—N1—H1B120.0
H2A—N2—H2B107.9H1A—N1—H1B120.0
N2—C3—C4i110.33 (6)O3—C1—O1127.54 (7)
N2—C3—H3A109.6O3—C1—O1127.54 (7)
C4i—C3—H3A109.6O3—C1—C2116.96 (6)
N2—C3—H3B109.6O3—C1—C2116.96 (6)
C4i—C3—H3B109.6O1—C1—C2115.50 (5)
H3A—C3—H3B108.1O2—C2—N1123.63 (7)
N2—C4—C3i110.48 (6)O2—C2—C1120.41 (6)
N2—C4—H4A109.6N1—C2—C1115.96 (5)
C3i—C4—H4A109.6
C4—N2—C3—C4i−56.67 (9)O3—C1—C2—O2−170.89 (8)
C3—N2—C4—C3i56.75 (9)O1—C1—C2—O28.52 (11)
O3—O3—C1—O10.00 (4)O3—C1—C2—N18.95 (11)
O3—O3—C1—C20.00 (4)O3—C1—C2—N18.95 (11)
O3—C1—C2—O2−170.89 (8)O1—C1—C2—N1−171.64 (7)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O1ii0.862.243.0232 (9)152
N1—H1B···O3iii0.862.072.8622 (8)153
N2—H2A···O1iv0.902.373.0589 (8)133
N2—H2A···O2iv0.901.942.7475 (9)149
N2—H2B···O1v0.901.872.7509 (9)164
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N1—H1A⋯O1i0.862.243.0232 (9)152
N1—H1B⋯O3ii0.862.072.8622 (8)153
N2—H2A⋯O1iii0.902.373.0589 (8)133
N2—H2A⋯O2iii0.901.942.7475 (9)149
N2—H2B⋯O1iv0.901.872.7509 (9)164

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Hydrogen ion buffers for biological research.

Authors:  N E Good; G D Winget; W Winter; T N Connolly; S Izawa; R M Singh
Journal:  Biochemistry       Date:  1966-02       Impact factor: 3.162

3.  2-Fluoro-anilinium N-(2-fluoro-phenyl)oxamate.

Authors:  Orhan Büyükgüngör; Mustafa Odabaşoğlu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-04-04

4.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  4 in total
  2 in total

1.  Piperazine-1,4-diium bis-(hydrogen 2-propyl-1H-imidazole-4,5-dicarbox-ylate) monohydrate.

Authors:  Zhu-Qing Gao; Jin-Zhong Gu
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-12-04

2.  Tris(piperazine-1,4-diium) bis-[hexa-chloridoindate(III)] tetra-hydrate.

Authors:  Sofiane Bouacida; Ratiba Belhouas; Boubakeur Fantazi; Chaouki Boudaren; Thierry Roisnel
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2011-03-09
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.