Literature DB >> 21522743

Piperazine-1,4-diium bis-(hydrogen 2-propyl-1H-imidazole-4,5-dicarbox-ylate) monohydrate.

Zhu-Qing Gao, Jin-Zhong Gu.   

Abstract

The title compound, C(4)H(12)N(2) (2+)·2C(8)n class="Species">H(9)N(2)O(4) (-)·H(2)O, is a hydrated proton-transfer compound obtained from 2-propyl-1H-imidazole-4,5-dicarb-oxy-lic acid and piperazine. The asymmetric unit contains one half-cation, one anion and half a water mol-ecule. There is a centre of inversion at the centre of the cation ring and the water molecule O atom lies on a twofold rotation axis. In the crystal, inter-molecular N-H⋯O and N-H⋯N hydrogen bonds help to construct a three-dimensional framework. Almost symmetrical, intramolecular O-H⋯O inter-actions are also observed.

Entities:  

Year:  2010        PMID: 21522743      PMCID: PMC3050275          DOI: 10.1107/S1600536810049822

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the structures and properties of proton-transfer compounds, see: Aghabozorg et al. (2006 ▶). For the use of multi-carboxyl­ate heterocyclic acids and n class="Chemical">piperazine in coord­ination chemistry, see: Murugavel et al. (2009 ▶); Sheshmani et al. (2006 ▶) and for piperazinium structures, see: Murugavel et al. (2009 ▶); Sheshmani et al. (2007 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C4H12N2 2+·2C8n class="Species">H9N2O4 −·H2O M = 500.52 Monoclinic, a = 11.288 (2) Å b = 15.965 (3) Å c = 14.449 (4) Å β = 101.296 (12)° V = 2553.6 (10) Å3 Z = 4 Mo Kα radiation μ = 0.10 mm−1 T = 273 K 0.20 × 0.18 × 0.16 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 1997 ▶) T min = 0.980, T max = 0.984 6239 measured reflections 2066 independent reflections 1499 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.050 wR(F 2) = 0.136 S = 1.05 2066 reflections 165 parameters 13 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.43 e Å−3 Δρmin = −0.21 e Å−3 Data collection: SMART (Bruker, 1997 ▶); cell refinement: SAINT (Bruker, 1997 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536810049822/jh2238sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536810049822/jh2238Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C4H12N22+·2C8H9N2O4·H2OF(000) = 1064
Mr = 500.52Dx = 1.302 Mg m3
Monoclinic, I2/aMo Kα radiation, λ = 0.71073 Å
a = 11.288 (2) ÅCell parameters from 1047 reflections
b = 15.965 (3) Åθ = 0.0–0.0°
c = 14.449 (4) ŵ = 0.10 mm1
β = 101.296 (12)°T = 273 K
V = 2553.6 (10) Å3Block, colorless
Z = 40.20 × 0.18 × 0.16 mm
Bruker SMART CCD area-detector diffractometer2066 independent reflections
Radiation source: fine-focus sealed tube1499 reflections with I > 2σ(I)
graphiteRint = 0.039
φ and ω scansθmax = 24.3°, θmin = 1.9°
Absorption correction: multi-scan (SADABS; Bruker, 1997)h = −10→13
Tmin = 0.980, Tmax = 0.984k = −18→17
6239 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.050Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H atoms treated by a mixture of independent and constrained refinement
S = 1.05w = 1/[σ2(Fo2) + (0.0619P)2 + 1.5738P] where P = (Fo2 + 2Fc2)/3
2066 reflections(Δ/σ)max = 0.001
165 parametersΔρmax = 0.43 e Å3
13 restraintsΔρmin = −0.21 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.0849 (2)0.71261 (16)0.09103 (17)0.0422 (6)
C20.1935 (2)0.67934 (14)0.15314 (16)0.0364 (6)
C30.2144 (2)0.64165 (14)0.24013 (16)0.0363 (6)
C40.1292 (2)0.62027 (16)0.30292 (18)0.0424 (6)
C50.5184 (2)0.6485 (2)0.1969 (2)0.0611 (8)
H5A0.56490.64780.26090.073*
H5B0.54090.69840.16610.073*
C60.5505 (3)0.5713 (3)0.1446 (4)0.1233 (18)
H6A0.50280.57100.08100.148*
H6B0.53080.52120.17650.148*
C70.6847 (4)0.5704 (3)0.1403 (5)0.171 (3)
H7A0.70390.61950.10780.205*
H7B0.70240.52130.10720.205*
H7C0.73200.56990.20320.205*
C80.5499 (2)0.57768 (16)0.47554 (19)0.0483 (7)
H8A0.56430.63700.48720.058*
H8B0.58640.56170.42270.058*
C90.3930 (2)0.47110 (16)0.43879 (17)0.0456 (7)
H9A0.42310.45090.38450.055*
H9B0.30620.46270.42670.055*
C120.3877 (2)0.65313 (16)0.20022 (17)0.0429 (6)
H2−0.004 (2)0.6647 (18)0.195 (2)0.103 (11)*
H1W0.81400.74430.02090.31 (5)*
N10.30493 (17)0.68560 (13)0.12993 (13)0.0410 (5)
H10.31960.70690.07870.049*
N20.33568 (18)0.62552 (13)0.26903 (14)0.0426 (5)
N30.42026 (17)0.56200 (13)0.45216 (14)0.0426 (5)
H3A0.38830.58970.39890.051*
H3B0.38560.58180.49880.051*
O1−0.01641 (15)0.70340 (13)0.11795 (13)0.0582 (6)
O20.09473 (15)0.74761 (12)0.01667 (12)0.0510 (5)
O30.01637 (15)0.63600 (13)0.27299 (13)0.0566 (5)
O40.16861 (16)0.58907 (12)0.38055 (12)0.0537 (5)
O50.75000.7747 (3)0.00000.170 (3)
U11U22U33U12U13U23
C10.0499 (16)0.0430 (15)0.0338 (14)0.0040 (12)0.0083 (12)−0.0025 (12)
C20.0403 (13)0.0379 (14)0.0322 (13)0.0010 (10)0.0101 (10)−0.0008 (10)
C30.0388 (13)0.0379 (14)0.0331 (13)0.0015 (10)0.0092 (10)0.0022 (10)
C40.0480 (15)0.0419 (15)0.0390 (15)0.0021 (11)0.0124 (12)0.0047 (12)
C50.0471 (17)0.088 (2)0.0514 (17)0.0117 (15)0.0188 (14)0.0195 (16)
C60.090 (3)0.089 (3)0.215 (5)0.042 (2)0.089 (3)0.042 (3)
C70.130 (4)0.149 (5)0.268 (7)0.062 (4)0.126 (5)0.072 (5)
C80.0438 (15)0.0455 (16)0.0572 (17)0.0039 (12)0.0138 (13)0.0078 (13)
C90.0408 (14)0.0511 (17)0.0438 (16)0.0050 (12)0.0055 (11)−0.0065 (12)
C120.0437 (14)0.0530 (16)0.0335 (14)0.0049 (12)0.0110 (11)0.0054 (12)
N10.0469 (12)0.0483 (13)0.0307 (11)0.0027 (10)0.0150 (9)0.0058 (9)
N20.0437 (12)0.0494 (13)0.0366 (12)0.0059 (9)0.0127 (9)0.0089 (9)
N30.0448 (12)0.0479 (13)0.0354 (11)0.0108 (9)0.0090 (9)0.0058 (9)
O10.0429 (11)0.0824 (15)0.0487 (12)0.0088 (9)0.0075 (9)0.0143 (10)
O20.0610 (12)0.0601 (12)0.0334 (10)0.0150 (9)0.0132 (9)0.0053 (8)
O30.0427 (11)0.0766 (14)0.0527 (12)0.0031 (9)0.0146 (9)0.0180 (10)
O40.0540 (11)0.0682 (13)0.0426 (11)0.0087 (9)0.0189 (9)0.0200 (9)
O50.084 (3)0.089 (3)0.315 (8)0.000−0.015 (4)0.000
C1—O21.235 (3)C7—H7C0.9600
C1—O11.286 (3)C8—N31.458 (3)
C1—C21.469 (3)C8—C9i1.497 (3)
C2—N11.368 (3)C8—H8A0.9700
C2—C31.372 (3)C8—H8B0.9700
C3—N21.375 (3)C9—N31.488 (3)
C3—C41.486 (3)C9—C8i1.497 (3)
C4—O41.228 (3)C9—H9A0.9700
C4—O31.287 (3)C9—H9B0.9700
C5—C121.487 (3)C12—N21.325 (3)
C5—C61.526 (5)C12—N11.342 (3)
C5—H5A0.9700N1—H10.8600
C5—H5B0.9700N3—H3A0.9000
C6—C71.528 (5)N3—H3B0.9000
C6—H6A0.9700O1—H21.26 (3)
C6—H6B0.9700O3—H21.19 (3)
C7—H7A0.9600O5—H1W0.8739
C7—H7B0.9600
O2—C1—O1123.5 (2)H7B—C7—H7C109.5
O2—C1—C2119.2 (2)N3—C8—C9i110.6 (2)
O1—C1—C2117.3 (2)N3—C8—H8A109.5
N1—C2—C3104.8 (2)C9i—C8—H8A109.5
N1—C2—C1121.4 (2)N3—C8—H8B109.5
C3—C2—C1133.8 (2)C9i—C8—H8B109.5
C2—C3—N2110.1 (2)H8A—C8—H8B108.1
C2—C3—C4130.1 (2)N3—C9—C8i110.8 (2)
N2—C3—C4119.8 (2)N3—C9—H9A109.5
O4—C4—O3122.9 (2)C8i—C9—H9A109.5
O4—C4—C3119.3 (2)N3—C9—H9B109.5
O3—C4—C3117.8 (2)C8i—C9—H9B109.5
C12—C5—C6112.9 (3)H9A—C9—H9B108.1
C12—C5—H5A109.0N2—C12—N1110.5 (2)
C6—C5—H5A109.0N2—C12—C5126.6 (2)
C12—C5—H5B109.0N1—C12—C5122.9 (2)
C6—C5—H5B109.0C12—N1—C2108.89 (19)
H5A—C5—H5B107.8C12—N1—H1125.6
C5—C6—C7111.2 (4)C2—N1—H1125.6
C5—C6—H6A109.4C12—N2—C3105.7 (2)
C7—C6—H6A109.4C8—N3—C9111.74 (18)
C5—C6—H6B109.4C8—N3—H3A109.3
C7—C6—H6B109.4C9—N3—H3A109.3
H6A—C6—H6B108.0C8—N3—H3B109.3
C6—C7—H7A109.5C9—N3—H3B109.3
C6—C7—H7B109.5H3A—N3—H3B107.9
H7A—C7—H7B109.5C1—O1—H2112.1 (11)
C6—C7—H7C109.5C4—O3—H2112.9 (12)
H7A—C7—H7C109.5
D—H···AD—HH···AD···AD—H···A
O3—H2···O11.19 (3)1.26 (3)2.447 (3)172 (3)
O5—H1W···O1ii0.872.243.065 (3)158.
N1—H1···O2iii0.861.942.773 (3)162.
N3—H3A···N20.901.942.820 (3)165.
N3—H3B···O4iv0.901.962.826 (3)161.
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O3—H2⋯O11.19 (3)1.26 (3)2.447 (3)172 (3)
O5—H1W⋯O1i0.872.243.065 (3)158
N1—H1⋯O2ii0.861.942.773 (3)162
N3—H3A⋯N20.901.942.820 (3)165
N3—H3B⋯O4iii0.901.962.826 (3)161

Symmetry codes: (i) ; (ii) ; (iii) .

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