Literature DB >> 21583758

Bis(4-amino-3,5-di-2-pyridyl-4H-1,2,4-triazole)diaquanickel(II) bis(perchlorate).

Chun-Fu Shao1, Li-Chuan Geng.   

Abstract

In the mol-ecular structure of the centrosymmetric mononuclear complex [Ni(2-bpt)(2)(H(2)O)(2)](ClO(4))(2) [2-bpt = 4-amino-3,5-di-2-pyridyl-1,2,4-triazole, (C(12)H(10)N(6))], the central Ni(II) atom is six-coordinated by a pair of chelating 2-bpt ligands and two water mol-ecules. Inter-molecular O-H⋯N inter-actions link the monomeric units into a two-dimensional hydrogen-bonded (4,4) network, which is extended to a three-dimensional supra-molecular aggregate via π⋯π stacking inter-actions [centroid-centroid distances 3.809 (3) and 3.499 (3)  Å].

Entities:  

Year:  2009        PMID: 21583758      PMCID: PMC2977572          DOI: 10.1107/S1600536809012598

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

Diverse coordination architectures can be constructed by coordinative bonds using metal ions to combine with multifunctional ligands, see: Moulton & Zaworotko (2001 ▶). Supra­molecular inter­actions such as hydrogen bonding and aromatic stacking are usually used to extend or sustain the resultant structures, see: Roesky & Andruh (2003 ▶); Ye et al. (2005 ▶); Du et al. (2007 ▶). For polypyrid­yl–transition metal complexes, see: Haasnoot (2000 ▶). For the potential ability of 4-amino-3,5-di-2-pyridyl-1,2,4-triazole (2-bpt) to provide multi-coordination modes and generate hydrogen-bonding and/or aromatic stacking inter­actions, see: Van Koningsbruggen et al. (1998 ▶); Moliner et al. (2001 ▶); García-Couceiro et al. (2004 ▶); Peng et al. (2006 ▶). For NiII2-bpt complexes, see: Keij et al. (1984 ▶); Tong et al. (2007 ▶). For the (4,4) topology, see: Batten & Robson (1998 ▶).

Experimental

Crystal data

[Ni(C12H10N6)2(H2O)2](ClO4)2 M = 770.16 Monoclinic, a = 9.9219 (15) Å b = 14.359 (2) Å c = 10.9220 (18) Å β = 100.560 (3)° V = 1529.7 (4) Å3 Z = 2 Mo Kα radiation μ = 0.89 mm−1 T = 296 K 0.20 × 0.18 × 0.16 mm

Data collection

Bruker SMART CCD area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2001 ▶) T min = 0.840, T max = 0.870 7639 measured reflections 2686 independent reflections 2171 reflections with I > 2σ(I) R int = 0.028

Refinement

R[F 2 > 2σ(F 2)] = 0.051 wR(F 2) = 0.154 S = 1.07 2686 reflections 223 parameters H-atom parameters constrained Δρmax = 1.12 e Å−3 Δρmin = −0.40 e Å−3 Data collection: APEX2 (Bruker, 2003 ▶); cell refinement: SAINT (Bruker, 2001 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Berndt, 1999 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶). Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809012598/hg2489sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012598/hg2489Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Ni(C12H10N6)2(H2O)2](ClO4)2F(000) = 788
Mr = 770.16Dx = 1.672 Mg m3
Monoclinic, P21/nMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ynCell parameters from 2386 reflections
a = 9.9219 (15) Åθ = 2.4–24.5°
b = 14.359 (2) ŵ = 0.89 mm1
c = 10.9220 (18) ÅT = 296 K
β = 100.560 (3)°Block, pale green
V = 1529.7 (4) Å30.20 × 0.18 × 0.16 mm
Z = 2
Bruker SMART CCD area-detector diffractometer2686 independent reflections
Radiation source: fine-focus sealed tube2171 reflections with I > 2σ(I)
graphiteRint = 0.028
phi and ω scansθmax = 25.0°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Bruker, 2001)h = −10→11
Tmin = 0.840, Tmax = 0.870k = −17→16
7639 measured reflectionsl = −11→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.051Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.154H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.090P)2 + 1.5989P] where P = (Fo2 + 2Fc2)/3
2686 reflections(Δ/σ)max < 0.001
223 parametersΔρmax = 1.12 e Å3
0 restraintsΔρmin = −0.40 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Ni10.50000.00000.50000.0297 (2)
Cl10.37983 (11)0.36054 (8)0.32882 (10)0.0472 (3)
O10.5877 (3)0.12860 (19)0.5625 (3)0.0416 (7)
H1A0.65020.13020.62710.062*
H1B0.52810.17170.55560.062*
O20.4370 (5)0.2802 (3)0.3892 (4)0.0890 (14)
O30.4030 (7)0.3637 (7)0.2091 (6)0.184 (4)
O40.2372 (5)0.3650 (5)0.3186 (6)0.130 (2)
O50.4382 (8)0.4351 (3)0.3942 (8)0.203 (5)
N10.5588 (3)0.0213 (2)0.3259 (3)0.0330 (7)
N20.3327 (3)0.0682 (2)0.4056 (3)0.0328 (7)
N30.2087 (3)0.0979 (2)0.4288 (3)0.0365 (7)
N40.2168 (3)0.1192 (2)0.2312 (3)0.0318 (7)
N50.1787 (4)0.1333 (3)0.1001 (3)0.0424 (8)
H5A0.13990.07960.06930.064*
H5B0.11700.17950.09740.064*
N6−0.0420 (3)0.2165 (3)0.2012 (3)0.0440 (8)
C10.6805 (4)0.0015 (3)0.2978 (4)0.0396 (9)
H10.7459−0.02830.35660.047*
C20.7126 (4)0.0244 (3)0.1820 (4)0.0456 (10)
H20.79750.00850.16350.055*
C30.6174 (5)0.0706 (3)0.0954 (4)0.0468 (11)
H30.63800.08840.01900.056*
C40.4893 (4)0.0901 (3)0.1251 (4)0.0414 (10)
H40.42210.12000.06810.050*
C50.4640 (4)0.0642 (2)0.2404 (3)0.0324 (8)
C60.3373 (4)0.0829 (2)0.2869 (3)0.0305 (8)
C70.1398 (4)0.1292 (3)0.3220 (4)0.0332 (8)
C80.0045 (4)0.1734 (3)0.3089 (4)0.0353 (9)
C9−0.1653 (5)0.2580 (3)0.1895 (5)0.0524 (11)
H9−0.20080.28690.11420.063*
C10−0.2413 (5)0.2603 (3)0.2819 (5)0.0542 (12)
H10−0.32530.29080.27030.065*
C11−0.1904 (5)0.2166 (3)0.3918 (5)0.0563 (12)
H11−0.23970.21740.45650.068*
C12−0.0655 (4)0.1712 (3)0.4068 (4)0.0472 (11)
H12−0.03010.14020.48040.057*
U11U22U33U12U13U23
Ni10.0277 (4)0.0354 (4)0.0254 (4)0.0013 (3)0.0039 (3)0.0021 (3)
Cl10.0438 (6)0.0497 (6)0.0437 (6)0.0050 (5)−0.0036 (5)0.0001 (5)
O10.0389 (16)0.0406 (15)0.0433 (17)−0.0022 (12)0.0021 (13)0.0004 (12)
O20.108 (3)0.058 (2)0.087 (3)0.013 (2)−0.018 (3)0.014 (2)
O30.150 (6)0.339 (11)0.077 (4)0.078 (6)0.055 (4)0.074 (5)
O40.061 (3)0.203 (6)0.129 (5)0.035 (3)0.028 (3)0.020 (4)
O50.230 (8)0.055 (3)0.247 (8)0.012 (4)−0.159 (7)−0.024 (4)
N10.0329 (17)0.0362 (16)0.0301 (17)0.0002 (13)0.0064 (14)−0.0015 (13)
N20.0325 (17)0.0390 (17)0.0269 (16)0.0028 (13)0.0051 (13)0.0010 (13)
N30.0338 (18)0.0441 (18)0.0308 (17)0.0025 (14)0.0038 (14)0.0006 (14)
N40.0336 (17)0.0352 (16)0.0256 (16)0.0004 (13)0.0029 (13)0.0006 (13)
N50.044 (2)0.055 (2)0.0268 (17)0.0075 (16)0.0039 (15)0.0078 (15)
N60.0336 (18)0.056 (2)0.042 (2)0.0059 (16)0.0061 (15)0.0106 (17)
C10.033 (2)0.036 (2)0.048 (2)0.0017 (16)0.0034 (18)−0.0033 (18)
C20.036 (2)0.055 (3)0.049 (3)−0.0033 (19)0.016 (2)−0.010 (2)
C30.053 (3)0.056 (3)0.036 (2)−0.006 (2)0.020 (2)−0.002 (2)
C40.044 (2)0.050 (2)0.031 (2)0.0007 (19)0.0095 (18)0.0035 (18)
C50.036 (2)0.0314 (19)0.0306 (19)−0.0021 (15)0.0085 (16)−0.0006 (15)
C60.033 (2)0.0306 (18)0.0283 (19)−0.0012 (15)0.0056 (16)0.0000 (15)
C70.031 (2)0.0362 (19)0.031 (2)−0.0004 (15)0.0037 (16)−0.0015 (16)
C80.0298 (19)0.037 (2)0.039 (2)−0.0018 (16)0.0063 (16)−0.0005 (17)
C90.041 (2)0.053 (3)0.061 (3)0.009 (2)0.004 (2)0.014 (2)
C100.038 (2)0.049 (3)0.077 (4)0.009 (2)0.015 (2)0.002 (2)
C110.045 (3)0.065 (3)0.066 (3)0.001 (2)0.029 (2)−0.006 (3)
C120.043 (2)0.059 (3)0.042 (2)0.002 (2)0.012 (2)0.003 (2)
Ni1—N2i2.037 (3)N5—H5B0.9000
Ni1—N22.037 (3)N6—C81.334 (5)
Ni1—O12.101 (3)N6—C91.346 (5)
Ni1—O1i2.101 (3)C1—C21.399 (6)
Ni1—N12.111 (3)C1—H10.9300
Ni1—N1i2.111 (3)C2—C31.378 (7)
Cl1—O51.357 (5)C2—H20.9300
Cl1—O31.369 (6)C3—C41.397 (6)
Cl1—O21.396 (4)C3—H30.9300
Cl1—O41.401 (5)C4—C51.379 (5)
O1—H1A0.8499C4—H40.9300
O1—H1B0.8500C5—C61.465 (5)
N1—C11.330 (5)C7—C81.468 (5)
N1—C51.348 (5)C8—C121.378 (6)
N2—C61.323 (5)C9—C101.367 (7)
N2—N31.369 (4)C9—H90.9300
N3—C71.318 (5)C10—C111.367 (7)
N4—C61.343 (5)C10—H100.9300
N4—C71.366 (5)C11—C121.383 (6)
N4—N51.426 (4)C11—H110.9300
N5—H5A0.9000C12—H120.9300
N2i—Ni1—N2180.00 (16)C8—N6—C9116.8 (4)
N2i—Ni1—O190.42 (11)N1—C1—C2121.7 (4)
N2—Ni1—O189.58 (11)N1—C1—H1119.1
N2i—Ni1—O1i89.58 (11)C2—C1—H1119.1
N2—Ni1—O1i90.42 (11)C3—C2—C1119.5 (4)
O1—Ni1—O1i180.00 (7)C3—C2—H2120.2
N2i—Ni1—N1101.04 (12)C1—C2—H2120.2
N2—Ni1—N178.96 (12)C2—C3—C4118.4 (4)
O1—Ni1—N189.94 (11)C2—C3—H3120.8
O1i—Ni1—N190.06 (11)C4—C3—H3120.8
N2i—Ni1—N1i78.96 (12)C5—C4—C3118.9 (4)
N2—Ni1—N1i101.04 (12)C5—C4—H4120.5
O1—Ni1—N1i90.06 (11)C3—C4—H4120.5
O1i—Ni1—N1i89.94 (11)N1—C5—C4122.4 (4)
N1—Ni1—N1i180.000 (1)N1—C5—C6112.2 (3)
O5—Cl1—O3110.3 (6)C4—C5—C6125.3 (4)
O5—Cl1—O2107.8 (3)N2—C6—N4108.5 (3)
O3—Cl1—O2110.8 (4)N2—C6—C5119.8 (3)
O5—Cl1—O4109.5 (5)N4—C6—C5131.6 (3)
O3—Cl1—O4105.5 (4)N3—C7—N4109.8 (3)
O2—Cl1—O4113.1 (4)N3—C7—C8123.4 (3)
Ni1—O1—H1A119.3N4—C7—C8126.7 (3)
Ni1—O1—H1B111.7N6—C8—C12123.5 (4)
H1A—O1—H1B116.3N6—C8—C7116.6 (3)
C1—N1—C5119.0 (4)C12—C8—C7119.8 (4)
C1—N1—Ni1126.2 (3)N6—C9—C10123.7 (4)
C5—N1—Ni1114.7 (2)N6—C9—H9118.2
C6—N2—N3109.0 (3)C10—C9—H9118.2
C6—N2—Ni1113.7 (2)C9—C10—C11118.2 (4)
N3—N2—Ni1137.1 (2)C9—C10—H10120.9
C7—N3—N2106.3 (3)C11—C10—H10120.9
C6—N4—C7106.4 (3)C10—C11—C12119.9 (4)
C6—N4—N5124.0 (3)C10—C11—H11120.0
C7—N4—N5129.3 (3)C12—C11—H11120.0
N4—N5—H5A105.7C8—C12—C11117.8 (4)
N4—N5—H5B101.1C8—C12—H12121.1
H5A—N5—H5B112.2C11—C12—H12121.1
N2i—Ni1—N1—C1−5.8 (3)Ni1—N2—C6—N4173.7 (2)
N2—Ni1—N1—C1174.2 (3)N3—N2—C6—C5174.9 (3)
O1—Ni1—N1—C184.6 (3)Ni1—N2—C6—C5−9.6 (4)
O1i—Ni1—N1—C1−95.4 (3)C7—N4—C6—N22.2 (4)
N2i—Ni1—N1—C5178.4 (2)N5—N4—C6—N2−172.0 (3)
N2—Ni1—N1—C5−1.6 (2)C7—N4—C6—C5−174.1 (4)
O1—Ni1—N1—C5−91.2 (3)N5—N4—C6—C511.8 (6)
O1i—Ni1—N1—C588.8 (3)N1—C5—C6—N28.2 (5)
O1—Ni1—N2—C695.9 (3)C4—C5—C6—N2−169.2 (4)
O1i—Ni1—N2—C6−84.1 (3)N1—C5—C6—N4−175.9 (4)
N1—Ni1—N2—C65.9 (3)C4—C5—C6—N46.7 (7)
N1i—Ni1—N2—C6−174.1 (3)N2—N3—C7—N40.6 (4)
O1—Ni1—N2—N3−90.3 (4)N2—N3—C7—C8−175.7 (3)
O1i—Ni1—N2—N389.7 (4)C6—N4—C7—N3−1.7 (4)
N1—Ni1—N2—N3179.7 (4)N5—N4—C7—N3172.1 (3)
N1i—Ni1—N2—N3−0.3 (4)C6—N4—C7—C8174.4 (4)
C6—N2—N3—C70.8 (4)N5—N4—C7—C8−11.8 (6)
Ni1—N2—N3—C7−173.2 (3)C9—N6—C8—C12−1.1 (6)
C5—N1—C1—C20.2 (6)C9—N6—C8—C7−179.2 (4)
Ni1—N1—C1—C2−175.4 (3)N3—C7—C8—N6168.3 (4)
N1—C1—C2—C31.6 (6)N4—C7—C8—N6−7.3 (6)
C1—C2—C3—C4−2.3 (6)N3—C7—C8—C12−9.9 (6)
C2—C3—C4—C51.4 (6)N4—C7—C8—C12174.5 (4)
C1—N1—C5—C4−1.2 (6)C8—N6—C9—C101.9 (7)
Ni1—N1—C5—C4174.9 (3)N6—C9—C10—C11−1.1 (7)
C1—N1—C5—C6−178.6 (3)C9—C10—C11—C12−0.4 (7)
Ni1—N1—C5—C6−2.6 (4)N6—C8—C12—C11−0.3 (7)
C3—C4—C5—N10.4 (6)C7—C8—C12—C11177.7 (4)
C3—C4—C5—C6177.5 (4)C10—C11—C12—C81.1 (7)
N3—N2—C6—N4−1.9 (4)
D—H···AD—HH···AD···AD—H···A
O1—H1A···O3ii0.852.513.245 (8)146
O1—H1A···O4ii0.852.112.918 (7)158
O1—H1B···O20.852.443.085 (5)134
O1—H1B···N6ii0.852.453.100 (5)134
N5—H5A···O5iii0.902.283.078 (7)148
N5—H5B···N60.902.172.886 (5)136
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
O1—H1A⋯O3i0.852.513.245 (8)146
O1—H1A⋯O4i0.852.112.918 (7)158
O1—H1B⋯O20.852.443.085 (5)134
O1—H1B⋯N6i0.852.453.100 (5)134
N5—H5A⋯O5ii0.902.283.078 (7)148
N5—H5B⋯N60.902.172.886 (5)136

Symmetry codes: (i) ; (ii) .

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Authors:  B Moulton; M J Zaworotko
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2.  A short history of SHELX.

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3.  Light- and thermal-induced spin crossover in [Fe(abpt)2(N(CN)2)2]. Synthesis, structure, magnetic properties, and high-spin<-->low spin relaxation studies.

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Journal:  Inorg Chem       Date:  2001-07-30       Impact factor: 5.165

4.  Structure validation in chemical crystallography.

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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
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1.  Bis(4-amino-3,5-di-2-pyridyl-1,2,4-triazole-κN,N)diaqua-zinc(II) dinitrate.

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