| Literature DB >> 21583758 |
Abstract
In the mol-ecular structure of the centrosymmetric mononuclear complex [Ni(2-bpt)(2)(H(2)O)(2)](ClO(4))(2) [2-bpt = 4-amino-3,5-di-2-pyridyl-1,2,4-triazole, (C(12)H(10)N(6))], the central Ni(II) atom is six-coordinated by a pair of chelating 2-bpt ligands and two water mol-ecules. Inter-molecular O-H⋯N inter-actions link the monomeric units into a two-dimensional hydrogen-bonded (4,4) network, which is extended to a three-dimensional supra-molecular aggregate via π⋯π stacking inter-actions [centroid-centroid distances 3.809 (3) and 3.499 (3) Å].Entities:
Year: 2009 PMID: 21583758 PMCID: PMC2977572 DOI: 10.1107/S1600536809012598
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
| [Ni(C12H10N6)2(H2O)2](ClO4)2 | |
| Monoclinic, | Mo |
| Hall symbol: -P 2yn | Cell parameters from 2386 reflections |
| θ = 2.4–24.5° | |
| µ = 0.89 mm−1 | |
| β = 100.560 (3)° | Block, pale green |
| 0.20 × 0.18 × 0.16 mm | |
| Bruker SMART CCD area-detector diffractometer | 2686 independent reflections |
| Radiation source: fine-focus sealed tube | 2171 reflections with |
| graphite | |
| phi and ω scans | θmax = 25.0°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 7639 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2686 reflections | (Δ/σ)max < 0.001 |
| 223 parameters | Δρmax = 1.12 e Å−3 |
| 0 restraints | Δρmin = −0.40 e Å−3 |
| Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
| Refinement. Refinement of |
| Ni1 | 0.5000 | 0.0000 | 0.5000 | 0.0297 (2) | |
| Cl1 | 0.37983 (11) | 0.36054 (8) | 0.32882 (10) | 0.0472 (3) | |
| O1 | 0.5877 (3) | 0.12860 (19) | 0.5625 (3) | 0.0416 (7) | |
| H1A | 0.6502 | 0.1302 | 0.6271 | 0.062* | |
| H1B | 0.5281 | 0.1717 | 0.5556 | 0.062* | |
| O2 | 0.4370 (5) | 0.2802 (3) | 0.3892 (4) | 0.0890 (14) | |
| O3 | 0.4030 (7) | 0.3637 (7) | 0.2091 (6) | 0.184 (4) | |
| O4 | 0.2372 (5) | 0.3650 (5) | 0.3186 (6) | 0.130 (2) | |
| O5 | 0.4382 (8) | 0.4351 (3) | 0.3942 (8) | 0.203 (5) | |
| N1 | 0.5588 (3) | 0.0213 (2) | 0.3259 (3) | 0.0330 (7) | |
| N2 | 0.3327 (3) | 0.0682 (2) | 0.4056 (3) | 0.0328 (7) | |
| N3 | 0.2087 (3) | 0.0979 (2) | 0.4288 (3) | 0.0365 (7) | |
| N4 | 0.2168 (3) | 0.1192 (2) | 0.2312 (3) | 0.0318 (7) | |
| N5 | 0.1787 (4) | 0.1333 (3) | 0.1001 (3) | 0.0424 (8) | |
| H5A | 0.1399 | 0.0796 | 0.0693 | 0.064* | |
| H5B | 0.1170 | 0.1795 | 0.0974 | 0.064* | |
| N6 | −0.0420 (3) | 0.2165 (3) | 0.2012 (3) | 0.0440 (8) | |
| C1 | 0.6805 (4) | 0.0015 (3) | 0.2978 (4) | 0.0396 (9) | |
| H1 | 0.7459 | −0.0283 | 0.3566 | 0.047* | |
| C2 | 0.7126 (4) | 0.0244 (3) | 0.1820 (4) | 0.0456 (10) | |
| H2 | 0.7975 | 0.0085 | 0.1635 | 0.055* | |
| C3 | 0.6174 (5) | 0.0706 (3) | 0.0954 (4) | 0.0468 (11) | |
| H3 | 0.6380 | 0.0884 | 0.0190 | 0.056* | |
| C4 | 0.4893 (4) | 0.0901 (3) | 0.1251 (4) | 0.0414 (10) | |
| H4 | 0.4221 | 0.1200 | 0.0681 | 0.050* | |
| C5 | 0.4640 (4) | 0.0642 (2) | 0.2404 (3) | 0.0324 (8) | |
| C6 | 0.3373 (4) | 0.0829 (2) | 0.2869 (3) | 0.0305 (8) | |
| C7 | 0.1398 (4) | 0.1292 (3) | 0.3220 (4) | 0.0332 (8) | |
| C8 | 0.0045 (4) | 0.1734 (3) | 0.3089 (4) | 0.0353 (9) | |
| C9 | −0.1653 (5) | 0.2580 (3) | 0.1895 (5) | 0.0524 (11) | |
| H9 | −0.2008 | 0.2869 | 0.1142 | 0.063* | |
| C10 | −0.2413 (5) | 0.2603 (3) | 0.2819 (5) | 0.0542 (12) | |
| H10 | −0.3253 | 0.2908 | 0.2703 | 0.065* | |
| C11 | −0.1904 (5) | 0.2166 (3) | 0.3918 (5) | 0.0563 (12) | |
| H11 | −0.2397 | 0.2174 | 0.4565 | 0.068* | |
| C12 | −0.0655 (4) | 0.1712 (3) | 0.4068 (4) | 0.0472 (11) | |
| H12 | −0.0301 | 0.1402 | 0.4804 | 0.057* |
| Ni1 | 0.0277 (4) | 0.0354 (4) | 0.0254 (4) | 0.0013 (3) | 0.0039 (3) | 0.0021 (3) |
| Cl1 | 0.0438 (6) | 0.0497 (6) | 0.0437 (6) | 0.0050 (5) | −0.0036 (5) | 0.0001 (5) |
| O1 | 0.0389 (16) | 0.0406 (15) | 0.0433 (17) | −0.0022 (12) | 0.0021 (13) | 0.0004 (12) |
| O2 | 0.108 (3) | 0.058 (2) | 0.087 (3) | 0.013 (2) | −0.018 (3) | 0.014 (2) |
| O3 | 0.150 (6) | 0.339 (11) | 0.077 (4) | 0.078 (6) | 0.055 (4) | 0.074 (5) |
| O4 | 0.061 (3) | 0.203 (6) | 0.129 (5) | 0.035 (3) | 0.028 (3) | 0.020 (4) |
| O5 | 0.230 (8) | 0.055 (3) | 0.247 (8) | 0.012 (4) | −0.159 (7) | −0.024 (4) |
| N1 | 0.0329 (17) | 0.0362 (16) | 0.0301 (17) | 0.0002 (13) | 0.0064 (14) | −0.0015 (13) |
| N2 | 0.0325 (17) | 0.0390 (17) | 0.0269 (16) | 0.0028 (13) | 0.0051 (13) | 0.0010 (13) |
| N3 | 0.0338 (18) | 0.0441 (18) | 0.0308 (17) | 0.0025 (14) | 0.0038 (14) | 0.0006 (14) |
| N4 | 0.0336 (17) | 0.0352 (16) | 0.0256 (16) | 0.0004 (13) | 0.0029 (13) | 0.0006 (13) |
| N5 | 0.044 (2) | 0.055 (2) | 0.0268 (17) | 0.0075 (16) | 0.0039 (15) | 0.0078 (15) |
| N6 | 0.0336 (18) | 0.056 (2) | 0.042 (2) | 0.0059 (16) | 0.0061 (15) | 0.0106 (17) |
| C1 | 0.033 (2) | 0.036 (2) | 0.048 (2) | 0.0017 (16) | 0.0034 (18) | −0.0033 (18) |
| C2 | 0.036 (2) | 0.055 (3) | 0.049 (3) | −0.0033 (19) | 0.016 (2) | −0.010 (2) |
| C3 | 0.053 (3) | 0.056 (3) | 0.036 (2) | −0.006 (2) | 0.020 (2) | −0.002 (2) |
| C4 | 0.044 (2) | 0.050 (2) | 0.031 (2) | 0.0007 (19) | 0.0095 (18) | 0.0035 (18) |
| C5 | 0.036 (2) | 0.0314 (19) | 0.0306 (19) | −0.0021 (15) | 0.0085 (16) | −0.0006 (15) |
| C6 | 0.033 (2) | 0.0306 (18) | 0.0283 (19) | −0.0012 (15) | 0.0056 (16) | 0.0000 (15) |
| C7 | 0.031 (2) | 0.0362 (19) | 0.031 (2) | −0.0004 (15) | 0.0037 (16) | −0.0015 (16) |
| C8 | 0.0298 (19) | 0.037 (2) | 0.039 (2) | −0.0018 (16) | 0.0063 (16) | −0.0005 (17) |
| C9 | 0.041 (2) | 0.053 (3) | 0.061 (3) | 0.009 (2) | 0.004 (2) | 0.014 (2) |
| C10 | 0.038 (2) | 0.049 (3) | 0.077 (4) | 0.009 (2) | 0.015 (2) | 0.002 (2) |
| C11 | 0.045 (3) | 0.065 (3) | 0.066 (3) | 0.001 (2) | 0.029 (2) | −0.006 (3) |
| C12 | 0.043 (2) | 0.059 (3) | 0.042 (2) | 0.002 (2) | 0.012 (2) | 0.003 (2) |
| Ni1—N2i | 2.037 (3) | N5—H5B | 0.9000 |
| Ni1—N2 | 2.037 (3) | N6—C8 | 1.334 (5) |
| Ni1—O1 | 2.101 (3) | N6—C9 | 1.346 (5) |
| Ni1—O1i | 2.101 (3) | C1—C2 | 1.399 (6) |
| Ni1—N1 | 2.111 (3) | C1—H1 | 0.9300 |
| Ni1—N1i | 2.111 (3) | C2—C3 | 1.378 (7) |
| Cl1—O5 | 1.357 (5) | C2—H2 | 0.9300 |
| Cl1—O3 | 1.369 (6) | C3—C4 | 1.397 (6) |
| Cl1—O2 | 1.396 (4) | C3—H3 | 0.9300 |
| Cl1—O4 | 1.401 (5) | C4—C5 | 1.379 (5) |
| O1—H1A | 0.8499 | C4—H4 | 0.9300 |
| O1—H1B | 0.8500 | C5—C6 | 1.465 (5) |
| N1—C1 | 1.330 (5) | C7—C8 | 1.468 (5) |
| N1—C5 | 1.348 (5) | C8—C12 | 1.378 (6) |
| N2—C6 | 1.323 (5) | C9—C10 | 1.367 (7) |
| N2—N3 | 1.369 (4) | C9—H9 | 0.9300 |
| N3—C7 | 1.318 (5) | C10—C11 | 1.367 (7) |
| N4—C6 | 1.343 (5) | C10—H10 | 0.9300 |
| N4—C7 | 1.366 (5) | C11—C12 | 1.383 (6) |
| N4—N5 | 1.426 (4) | C11—H11 | 0.9300 |
| N5—H5A | 0.9000 | C12—H12 | 0.9300 |
| N2i—Ni1—N2 | 180.00 (16) | C8—N6—C9 | 116.8 (4) |
| N2i—Ni1—O1 | 90.42 (11) | N1—C1—C2 | 121.7 (4) |
| N2—Ni1—O1 | 89.58 (11) | N1—C1—H1 | 119.1 |
| N2i—Ni1—O1i | 89.58 (11) | C2—C1—H1 | 119.1 |
| N2—Ni1—O1i | 90.42 (11) | C3—C2—C1 | 119.5 (4) |
| O1—Ni1—O1i | 180.00 (7) | C3—C2—H2 | 120.2 |
| N2i—Ni1—N1 | 101.04 (12) | C1—C2—H2 | 120.2 |
| N2—Ni1—N1 | 78.96 (12) | C2—C3—C4 | 118.4 (4) |
| O1—Ni1—N1 | 89.94 (11) | C2—C3—H3 | 120.8 |
| O1i—Ni1—N1 | 90.06 (11) | C4—C3—H3 | 120.8 |
| N2i—Ni1—N1i | 78.96 (12) | C5—C4—C3 | 118.9 (4) |
| N2—Ni1—N1i | 101.04 (12) | C5—C4—H4 | 120.5 |
| O1—Ni1—N1i | 90.06 (11) | C3—C4—H4 | 120.5 |
| O1i—Ni1—N1i | 89.94 (11) | N1—C5—C4 | 122.4 (4) |
| N1—Ni1—N1i | 180.000 (1) | N1—C5—C6 | 112.2 (3) |
| O5—Cl1—O3 | 110.3 (6) | C4—C5—C6 | 125.3 (4) |
| O5—Cl1—O2 | 107.8 (3) | N2—C6—N4 | 108.5 (3) |
| O3—Cl1—O2 | 110.8 (4) | N2—C6—C5 | 119.8 (3) |
| O5—Cl1—O4 | 109.5 (5) | N4—C6—C5 | 131.6 (3) |
| O3—Cl1—O4 | 105.5 (4) | N3—C7—N4 | 109.8 (3) |
| O2—Cl1—O4 | 113.1 (4) | N3—C7—C8 | 123.4 (3) |
| Ni1—O1—H1A | 119.3 | N4—C7—C8 | 126.7 (3) |
| Ni1—O1—H1B | 111.7 | N6—C8—C12 | 123.5 (4) |
| H1A—O1—H1B | 116.3 | N6—C8—C7 | 116.6 (3) |
| C1—N1—C5 | 119.0 (4) | C12—C8—C7 | 119.8 (4) |
| C1—N1—Ni1 | 126.2 (3) | N6—C9—C10 | 123.7 (4) |
| C5—N1—Ni1 | 114.7 (2) | N6—C9—H9 | 118.2 |
| C6—N2—N3 | 109.0 (3) | C10—C9—H9 | 118.2 |
| C6—N2—Ni1 | 113.7 (2) | C9—C10—C11 | 118.2 (4) |
| N3—N2—Ni1 | 137.1 (2) | C9—C10—H10 | 120.9 |
| C7—N3—N2 | 106.3 (3) | C11—C10—H10 | 120.9 |
| C6—N4—C7 | 106.4 (3) | C10—C11—C12 | 119.9 (4) |
| C6—N4—N5 | 124.0 (3) | C10—C11—H11 | 120.0 |
| C7—N4—N5 | 129.3 (3) | C12—C11—H11 | 120.0 |
| N4—N5—H5A | 105.7 | C8—C12—C11 | 117.8 (4) |
| N4—N5—H5B | 101.1 | C8—C12—H12 | 121.1 |
| H5A—N5—H5B | 112.2 | C11—C12—H12 | 121.1 |
| N2i—Ni1—N1—C1 | −5.8 (3) | Ni1—N2—C6—N4 | 173.7 (2) |
| N2—Ni1—N1—C1 | 174.2 (3) | N3—N2—C6—C5 | 174.9 (3) |
| O1—Ni1—N1—C1 | 84.6 (3) | Ni1—N2—C6—C5 | −9.6 (4) |
| O1i—Ni1—N1—C1 | −95.4 (3) | C7—N4—C6—N2 | 2.2 (4) |
| N2i—Ni1—N1—C5 | 178.4 (2) | N5—N4—C6—N2 | −172.0 (3) |
| N2—Ni1—N1—C5 | −1.6 (2) | C7—N4—C6—C5 | −174.1 (4) |
| O1—Ni1—N1—C5 | −91.2 (3) | N5—N4—C6—C5 | 11.8 (6) |
| O1i—Ni1—N1—C5 | 88.8 (3) | N1—C5—C6—N2 | 8.2 (5) |
| O1—Ni1—N2—C6 | 95.9 (3) | C4—C5—C6—N2 | −169.2 (4) |
| O1i—Ni1—N2—C6 | −84.1 (3) | N1—C5—C6—N4 | −175.9 (4) |
| N1—Ni1—N2—C6 | 5.9 (3) | C4—C5—C6—N4 | 6.7 (7) |
| N1i—Ni1—N2—C6 | −174.1 (3) | N2—N3—C7—N4 | 0.6 (4) |
| O1—Ni1—N2—N3 | −90.3 (4) | N2—N3—C7—C8 | −175.7 (3) |
| O1i—Ni1—N2—N3 | 89.7 (4) | C6—N4—C7—N3 | −1.7 (4) |
| N1—Ni1—N2—N3 | 179.7 (4) | N5—N4—C7—N3 | 172.1 (3) |
| N1i—Ni1—N2—N3 | −0.3 (4) | C6—N4—C7—C8 | 174.4 (4) |
| C6—N2—N3—C7 | 0.8 (4) | N5—N4—C7—C8 | −11.8 (6) |
| Ni1—N2—N3—C7 | −173.2 (3) | C9—N6—C8—C12 | −1.1 (6) |
| C5—N1—C1—C2 | 0.2 (6) | C9—N6—C8—C7 | −179.2 (4) |
| Ni1—N1—C1—C2 | −175.4 (3) | N3—C7—C8—N6 | 168.3 (4) |
| N1—C1—C2—C3 | 1.6 (6) | N4—C7—C8—N6 | −7.3 (6) |
| C1—C2—C3—C4 | −2.3 (6) | N3—C7—C8—C12 | −9.9 (6) |
| C2—C3—C4—C5 | 1.4 (6) | N4—C7—C8—C12 | 174.5 (4) |
| C1—N1—C5—C4 | −1.2 (6) | C8—N6—C9—C10 | 1.9 (7) |
| Ni1—N1—C5—C4 | 174.9 (3) | N6—C9—C10—C11 | −1.1 (7) |
| C1—N1—C5—C6 | −178.6 (3) | C9—C10—C11—C12 | −0.4 (7) |
| Ni1—N1—C5—C6 | −2.6 (4) | N6—C8—C12—C11 | −0.3 (7) |
| C3—C4—C5—N1 | 0.4 (6) | C7—C8—C12—C11 | 177.7 (4) |
| C3—C4—C5—C6 | 177.5 (4) | C10—C11—C12—C8 | 1.1 (7) |
| N3—N2—C6—N4 | −1.9 (4) |
| H··· | ||||
| O1—H1A···O3ii | 0.85 | 2.51 | 3.245 (8) | 146 |
| O1—H1A···O4ii | 0.85 | 2.11 | 2.918 (7) | 158 |
| O1—H1B···O2 | 0.85 | 2.44 | 3.085 (5) | 134 |
| O1—H1B···N6ii | 0.85 | 2.45 | 3.100 (5) | 134 |
| N5—H5A···O5iii | 0.90 | 2.28 | 3.078 (7) | 148 |
| N5—H5B···N6 | 0.90 | 2.17 | 2.886 (5) | 136 |
Hydrogen-bond geometry (Å, °)
| H⋯ | ||||
|---|---|---|---|---|
| O1—H1 | 0.85 | 2.51 | 3.245 (8) | 146 |
| O1—H1 | 0.85 | 2.11 | 2.918 (7) | 158 |
| O1—H1 | 0.85 | 2.44 | 3.085 (5) | 134 |
| O1—H1 | 0.85 | 2.45 | 3.100 (5) | 134 |
| N5—H5 | 0.90 | 2.28 | 3.078 (7) | 148 |
| N5—H5 | 0.90 | 2.17 | 2.886 (5) | 136 |
Symmetry codes: (i) ; (ii) .