Literature DB >> 21583752

Diaqua-bis(5-carb-oxy-2-methyl-1H-imidazole-4-carboxyl-ato-κN,O)cobalt(II) dimethyl-formamide disolvate.

Si-Ping Tang1.   

Abstract

In the title compound, [Co(C(6)H(5)N(2)O(4))(2)(H(2)O)(2)]·2C(3)H(7)NO, the Co(II) ion lies on an inversion center and adopts a slightly distorted CoN(2)O(4) octa-hedral geometry binding two bidentate chelating 5-carb-oxy-2-methyl-1H-imidazole-4-carboxyl-ate (H(2)MIDA(-)) monoanionic ligands and two axial aqua ligands. In the crystal structure, inter-molecular O-H⋯O hydrogen bonds link neighboring mol-ecules, generating a two-dimensional framework containing eight-membered H(4)O(4) rings. In addition, the dimethyl-formamide solvent mol-ecules are hydrogen bonded to the two-dimensional framework via the NH groups of the H(2)MIDA(-) ligands.

Entities:  

Year:  2009        PMID: 21583752      PMCID: PMC2977566          DOI: 10.1107/S1600536809012902

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For background to N-heterocyclic carboxylic acids as ligands in coordination complexes, see: Gao et al. (2004 ▶); Shimizu et al. (2004 ▶); Zhang et al. (2006 ▶). For related structures, see: Liu et al. (2007 ▶); Nie et al. (2007 ▶); Zeng et al. (2008 ▶).

Experimental

Crystal data

[Co(C6H5N2O4)2(H2O)2]·2C3H7NO M = 579.39 Triclinic, a = 7.1979 (11) Å b = 9.2180 (15) Å c = 10.8659 (17) Å α = 65.173 (2)° β = 83.459 (2)° γ = 68.254 (2)° V = 607.02 (17) Å3 Z = 1 Mo Kα radiation μ = 0.78 mm−1 T = 123 K 0.20 × 0.15 × 0.14 mm

Data collection

Bruker SMART APEX area-detector diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.859, T max = 0.899 4588 measured reflections 2335 independent reflections 2176 reflections with I > 2σ(I) R int = 0.026

Refinement

R[F 2 > 2σ(F 2)] = 0.039 wR(F 2) = 0.106 S = 1.06 2335 reflections 172 parameters 1 restraint H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.65 e Å−3 Δρmin = −0.49 e Å−3 Data collection: SMART (Bruker, 2002 ▶); cell refinement: SAINT (Bruker, 2002 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Crystal structure: contains datablocks I, global. DOI: 10.1107/S1600536809012902/sj2611sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809012902/sj2611Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
[Co(C6H5N2O4)2(H2O)2]·2C3H7NOZ = 1
Mr = 579.39F(000) = 301
Triclinic, P1Dx = 1.585 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.1979 (11) ÅCell parameters from 3423 reflections
b = 9.2180 (15) Åθ = 2.6–27.8°
c = 10.8659 (17) ŵ = 0.78 mm1
α = 65.173 (2)°T = 123 K
β = 83.459 (2)°Block, pink
γ = 68.254 (2)°0.20 × 0.15 × 0.14 mm
V = 607.02 (17) Å3
Bruker SMART APEX area-detector diffractometer2335 independent reflections
Radiation source: fine-focus sealed tube2176 reflections with I > 2σ(I)
graphiteRint = 0.026
φ and ω scansθmax = 26.0°, θmin = 2.6°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −8→7
Tmin = 0.859, Tmax = 0.899k = −11→11
4588 measured reflectionsl = −13→13
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.039Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.106H atoms treated by a mixture of independent and constrained refinement
S = 1.06w = 1/[σ2(Fo2) + (0.0631P)2 + 0.2477P] where P = (Fo2 + 2Fc2)/3
2335 reflections(Δ/σ)max < 0.001
172 parametersΔρmax = 0.65 e Å3
1 restraintΔρmin = −0.49 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
Co10.00001.00000.50000.01688 (15)
O40.1583 (2)0.97632 (18)0.32480 (14)0.0200 (3)
O1W0.2666 (2)0.96647 (18)0.58550 (14)0.0214 (3)
H1W20.37160.90170.56430.032*
H1W10.28571.05850.56850.032*
O30.3261 (2)0.78687 (18)0.23787 (14)0.0220 (3)
O20.4205 (2)0.47831 (19)0.30617 (15)0.0233 (3)
H2A0.391 (4)0.5850 (15)0.288 (3)0.035*
O10.3990 (2)0.24920 (18)0.48355 (16)0.0241 (3)
O50.8297 (3)−0.1528 (2)0.20333 (17)0.0343 (4)
N10.0922 (2)0.7355 (2)0.55599 (16)0.0171 (4)
N20.1798 (2)0.4572 (2)0.62169 (17)0.0181 (4)
H20.19320.35230.67130.022*
N30.6518 (3)0.1293 (2)0.08740 (18)0.0296 (4)
C60.2260 (3)0.8282 (3)0.33158 (19)0.0179 (4)
C50.1936 (3)0.6909 (2)0.4550 (2)0.0174 (4)
C40.2493 (3)0.5176 (2)0.4945 (2)0.0173 (4)
C30.3636 (3)0.4049 (3)0.4250 (2)0.0194 (4)
C20.0862 (3)0.5915 (2)0.6556 (2)0.0181 (4)
C1−0.0105 (3)0.5776 (3)0.7860 (2)0.0247 (5)
H1A0.08820.50480.85970.037*
H1B−0.11210.52970.79610.037*
H1C−0.07030.68920.78660.037*
C70.4556 (5)0.2630 (4)0.0431 (3)0.0559 (8)
H7A0.35390.21360.07540.084*
H7B0.44500.3176−0.05430.084*
H7C0.43840.34610.07880.084*
C80.8227 (5)0.1820 (4)0.0586 (3)0.0480 (7)
H8A0.82130.2500−0.03690.072*
H8B0.94340.08270.08540.072*
H8C0.81750.24840.10810.072*
C90.6694 (4)−0.0318 (3)0.1589 (2)0.0309 (5)
H90.5524−0.05630.17730.037*
U11U22U33U12U13U23
Co10.0189 (2)0.0105 (2)0.0213 (2)−0.00437 (16)0.00295 (15)−0.00778 (16)
O40.0233 (8)0.0124 (7)0.0237 (7)−0.0055 (6)0.0032 (5)−0.0082 (6)
O1W0.0208 (7)0.0153 (7)0.0301 (8)−0.0054 (6)0.0030 (6)−0.0126 (6)
O30.0273 (8)0.0180 (7)0.0221 (7)−0.0078 (6)0.0063 (6)−0.0110 (6)
O20.0279 (8)0.0168 (7)0.0297 (8)−0.0076 (6)0.0065 (6)−0.0151 (7)
O10.0227 (8)0.0146 (8)0.0375 (8)−0.0059 (6)0.0044 (6)−0.0144 (6)
O50.0393 (10)0.0179 (8)0.0395 (9)−0.0122 (7)0.0049 (7)−0.0051 (7)
N10.0172 (9)0.0136 (8)0.0209 (8)−0.0043 (7)0.0028 (6)−0.0087 (7)
N20.0200 (8)0.0098 (8)0.0240 (8)−0.0056 (7)0.0010 (6)−0.0063 (7)
N30.0419 (11)0.0206 (9)0.0236 (9)−0.0106 (8)0.0034 (8)−0.0076 (7)
C60.0152 (9)0.0167 (10)0.0228 (10)−0.0060 (8)0.0005 (7)−0.0086 (8)
C50.0161 (9)0.0155 (10)0.0218 (9)−0.0049 (8)0.0017 (7)−0.0094 (8)
C40.0163 (9)0.0147 (10)0.0227 (9)−0.0057 (8)0.0003 (7)−0.0091 (8)
C30.0152 (9)0.0160 (10)0.0303 (10)−0.0045 (8)−0.0002 (8)−0.0130 (9)
C20.0172 (10)0.0128 (10)0.0243 (10)−0.0054 (8)−0.0001 (7)−0.0074 (8)
C10.0299 (11)0.0205 (11)0.0245 (10)−0.0105 (9)0.0045 (8)−0.0096 (9)
C70.0534 (15)0.0351 (15)0.0471 (15)0.0034 (13)0.0177 (13)−0.0078 (12)
C80.0650 (16)0.0353 (14)0.0426 (14)−0.0331 (13)−0.0161 (13)0.0028 (12)
C90.0366 (13)0.0268 (12)0.0336 (12)−0.0164 (11)0.0115 (10)−0.0143 (10)
Co1—O1Wi2.0895 (14)N2—H20.8600
Co1—O1W2.0895 (14)N3—C91.319 (3)
Co1—N1i2.0982 (16)N3—C81.440 (3)
Co1—N12.0982 (16)N3—C71.453 (3)
Co1—O42.1543 (14)C6—C51.476 (3)
Co1—O4i2.1543 (14)C5—C41.374 (3)
O4—C61.240 (2)C4—C31.486 (3)
O1W—H1W20.8500C2—C11.482 (3)
O1W—H1W10.8500C1—H1A0.9600
O3—C61.287 (2)C1—H1B0.9600
O2—C31.282 (3)C1—H1C0.9600
O2—H2A0.863 (10)C7—H7A0.9600
O1—C31.237 (2)C7—H7B0.9600
O5—C91.237 (3)C7—H7C0.9600
N1—C21.327 (3)C8—H8A0.9600
N1—C51.371 (2)C8—H8B0.9600
N2—C21.353 (3)C8—H8C0.9600
N2—C41.368 (3)C9—H90.9300
O1Wi—Co1—O1W180.00 (8)N1—C5—C6117.57 (17)
O1Wi—Co1—N1i90.58 (6)C4—C5—C6132.78 (18)
O1W—Co1—N1i89.42 (6)N2—C4—C5105.63 (17)
O1Wi—Co1—N189.42 (6)N2—C4—C3123.03 (18)
O1W—Co1—N190.58 (6)C5—C4—C3131.33 (19)
N1i—Co1—N1180.0O1—C3—O2124.18 (18)
O1Wi—Co1—O490.84 (5)O1—C3—C4119.29 (19)
O1W—Co1—O489.16 (5)O2—C3—C4116.53 (17)
N1i—Co1—O4101.17 (6)N1—C2—N2110.61 (17)
N1—Co1—O478.83 (6)N1—C2—C1125.33 (18)
O1Wi—Co1—O4i89.16 (5)N2—C2—C1124.06 (18)
O1W—Co1—O4i90.84 (5)C2—C1—H1A109.5
N1i—Co1—O4i78.83 (6)C2—C1—H1B109.5
N1—Co1—O4i101.17 (6)H1A—C1—H1B109.5
O4—Co1—O4i180.0C2—C1—H1C109.5
C6—O4—Co1113.98 (12)H1A—C1—H1C109.5
Co1—O1W—H1W2114.5H1B—C1—H1C109.5
Co1—O1W—H1W1114.9N3—C7—H7A109.5
H1W2—O1W—H1W1106.7N3—C7—H7B109.5
C3—O2—H2A108.9 (18)H7A—C7—H7B109.5
C2—N1—C5106.13 (15)N3—C7—H7C109.5
C2—N1—Co1142.57 (14)H7A—C7—H7C109.5
C5—N1—Co1111.29 (12)H7B—C7—H7C109.5
C2—N2—C4107.99 (16)N3—C8—H8A109.5
C2—N2—H2126.0N3—C8—H8B109.5
C4—N2—H2126.0H8A—C8—H8B109.5
C9—N3—C8121.9 (2)N3—C8—H8C109.5
C9—N3—C7120.7 (2)H8A—C8—H8C109.5
C8—N3—C7117.2 (2)H8B—C8—H8C109.5
O4—C6—O3123.66 (18)O5—C9—N3124.9 (2)
O4—C6—C5118.29 (17)O5—C9—H9117.5
O3—C6—C5118.04 (17)N3—C9—H9117.5
N1—C5—C4109.64 (17)
O1Wi—Co1—O4—C6−87.79 (14)O4—C6—C5—C4−179.21 (19)
O1W—Co1—O4—C692.21 (14)O3—C6—C5—C4−0.4 (3)
N1i—Co1—O4—C6−178.54 (13)C2—N2—C4—C50.0 (2)
N1—Co1—O4—C61.46 (13)C2—N2—C4—C3178.91 (17)
O1Wi—Co1—N1—C2−89.6 (2)N1—C5—C4—N20.0 (2)
O1W—Co1—N1—C290.4 (2)C6—C5—C4—N2178.5 (2)
O4—Co1—N1—C2179.4 (2)N1—C5—C4—C3−178.80 (19)
O4i—Co1—N1—C2−0.6 (2)C6—C5—C4—C3−0.3 (4)
O1Wi—Co1—N1—C589.19 (13)N2—C4—C3—O1−0.1 (3)
O1W—Co1—N1—C5−90.81 (13)C5—C4—C3—O1178.5 (2)
O4—Co1—N1—C5−1.78 (12)N2—C4—C3—O2−179.72 (17)
O4i—Co1—N1—C5178.22 (12)C5—C4—C3—O2−1.1 (3)
Co1—O4—C6—O3−179.57 (15)C5—N1—C2—N20.0 (2)
Co1—O4—C6—C5−0.8 (2)Co1—N1—C2—N2178.85 (15)
C2—N1—C5—C40.0 (2)C5—N1—C2—C1−179.54 (18)
Co1—N1—C5—C4−179.25 (13)Co1—N1—C2—C1−0.7 (4)
C2—N1—C5—C6−178.74 (17)C4—N2—C2—N10.0 (2)
Co1—N1—C5—C62.0 (2)C4—N2—C2—C1179.55 (18)
O4—C6—C5—N1−0.8 (3)C8—N3—C9—O5−2.9 (4)
O3—C6—C5—N1178.00 (16)C7—N3—C9—O5−178.2 (2)
D—H···AD—HH···AD···AD—H···A
N2—H2···O5ii0.861.832.670 (2)166
O2—H2A···O30.86 (1)1.59 (1)2.452 (2)173 (3)
O1W—H1W2···O1iii0.851.912.7579 (19)178
O1W—H1W1···O1iv0.852.032.847 (2)160
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N2—H2⋯O5i0.861.832.670 (2)166
O2—H2A⋯O30.863 (10)1.593 (11)2.452 (2)173 (3)
O1W—H1W2⋯O1ii0.851.912.7579 (19)178
O1W—H1W1⋯O1iii0.852.032.847 (2)160

Symmetry codes: (i) ; (ii) ; (iii) .

  2 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Diaqua-bis(5-carb-oxy-2-methyl-1H-imidazole-4-carboxyl-ato-κN,O)manganese(II).

Authors:  Jian-Zhong Zeng; Xiu-Guang Yi; Jun-Yue Lin; Shao-Ming Ying; Gan-Sheng Huang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2008-02-15
  2 in total

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